BAC Information

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BAC

Clone NameB6Ng01-005J18
Chromosome12 (Build37)
Map Location 87,925,266 - 88,113,779
singlet/doubletdoublet
Overlap geneLOC667191, Vash1, Angel1, EG627607
Upstream geneJundm2, LOC100042073, Batf, BC011209, 0610007P14Rik, Ttll5, Tgfb3, 1700019E19Rik, 1700020O03Rik, LOC100042112, Esrrb
Downstream geneLOC100042650, 6430527G18Rik, 2310044G17Rik, Zdhhc22, Tmem63c, Ngb, Pomt2, Gstz1, EG625237, Tmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3, Sptlc2, LOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883, EG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005J18.bB6Ng01-005J18.g
ACCDH842699DH842700
length1831,105
definitionDH842699|Mus musculus domesticus DNA, BAC clone: B6Ng01-005J18, 5' end.DH842700|Mus musculus domesticus DNA, BAC clone: B6Ng01-005J18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,113,597 - 88,113,779)(87,925,266 - 87,926,271)
sequence
gaattctcagtatagcaagggtgtgtgtgtgtgtgtgtgtgtgtgttccc
gaagaagccccttccaaggcctcatgatttgatgttcattacactgtcag
cgtttgcaatttctcactggttacaacccaacctcctcccccaactctaa
agaaaccaatgtcgtgactactttctctccctc
gaattcacctctcccaatgagagtgctgtccaattgactgaataggacaa
acagacagaaagatgagagtaagcttgagatctaatttttgtgaggtggg
gacattcttcttcctgtgactctggacattagaacttagtgtcttagtca
ctgttccattgctgtgaagagacactatgacgaaggtaactctttcaatt
gggggtttgcttatagtttcagaagtttagtccattatcatcatggtggg
gagcacggtagcatgcgaggcactggagcagtagttgagagctacatcct
gataattggcagatagagaaagagagagaccctgggcgtggcatgggctt
ttgaaacctcaaagcctgtccctagtggcacacttcttccaacaagacca
caactcttaatcttttcaatcctttcaaacagtgacactccctgatggct
aagcatttaaatgatgagcctatgggaaccatttaagccatcacaattag
gttctctggcctttggattttaggacttgtaccaataaccccagtgttct
caggccaccagccctggacggagctgcaggatcggcgcccctgtgtcgat
ggtgatgcttatacgggccagtcagagatgagacttttgttgtggtaacc
aggtaaactttaaactacaggtcacaataagctcggtggagcttgggagc
aagaggagaaacctttgggtctttcccacttcctcctgctttttcccact
ttcacagcaacactgggggaaggtggacaaaggaatagagcaatgacaca
gacacacgcgcacacacacactttttagagagcctacccatctttttata
gcagggtaaacaggctcccgataaacgagattgtaagatgcttttgggga
aacagagaaaagaggattttaatcttcagcctccacccggattgtggcct
tatccagcttctggatgcttcaaagaaggaaaactgtttctgaagtttgt
caaggagacagtcggagaccagccacctagctaacaaacttgctcaaatt
cccagggtggctgcccctgcttgtctttttaaggaatttacttcttgcat
tgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_88113597_88113779
seq2: B6Ng01-005J18.b_40_222 (reverse)

seq1  GAGGGAGAGAAAGTAGTCACGACATTGGTTTCTTTAGAGTTGGGGGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGAGAAAGTAGTCACGACATTGGTTTCTTTAGAGTTGGGGGAGGA  50

seq1  GGTTGGGTTGTAACCAGTGAGAAATTGCAAACGCTGACAGTGTAATGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGGTTGTAACCAGTGAGAAATTGCAAACGCTGACAGTGTAATGAAC  100

seq1  ATCAAATCCTGAGGCCTTGGAAGGGGCTTCTTCGGGAACACACACACACA  150
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATCATGAGGCCTTGGAAGGGGCTTCTTCGGGAACACACACACACA  150

seq1  CACACACACACACCCTTGCTATACTGAGAATTC  183
      |||||||||||||||||||||||||||||||||
seq2  CACACACACACACCCTTGCTATACTGAGAATTC  183

seq1: chr12_87925266_87926271
seq2: B6Ng01-005J18.g_165_1173

seq1  TGGGGACATTCTTCTTCCTGTGACTCTGGACATTAGAACTTAGTGTCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACATTCTTCTTCCTGTGACTCTGGACATTAGAACTTAGTGTCTTA  50

seq1  GTCACTGTTCCATTGCTGTGAAGAGACACTATGACGAAGGTAACTCTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGTTCCATTGCTGTGAAGAGACACTATGACGAAGGTAACTCTTTC  100

seq1  AATTGGGGGTTTGCTTATAGTTTCAGAAGTTTAGTCCATTATCATCATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGGGTTTGCTTATAGTTTCAGAAGTTTAGTCCATTATCATCATGG  150

seq1  TGGGGAGCACGGTAGCATGCGAGGCACTGGAGCAGTAGTTGAGAGCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGCACGGTAGCATGCGAGGCACTGGAGCAGTAGTTGAGAGCTACA  200

seq1  TCCTGATAATTGGCAGATAGAGAAAGAGAGAGACCCTGGGCGTGGCATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATAATTGGCAGATAGAGAAAGAGAGAGACCCTGGGCGTGGCATGG  250

seq1  GCTTTTGAAACCTCAAAGCCTGTCCCTAGTGGCACACTTCTTCCAACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGAAACCTCAAAGCCTGTCCCTAGTGGCACACTTCTTCCAACAAG  300

seq1  ACCACAACTCTTAATCTTTTCAATCCTTTCAAACAGTGACACTCCCTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAACTCTTAATCTTTTCAATCCTTTCAAACAGTGACACTCCCTGAT  350

seq1  GGCTAAGCATTTAAATGATGAGCCTATGGGAACCATTTAAGCCATCACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAGCATTTAAATGATGAGCCTATGGGAACCATTTAAGCCATCACAA  400

seq1  TTAGGTTCTCTGGCCTTTGGATTTTAGGACTTGTACCAATAACCCCAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTCTCTGGCCTTTGGATTTTAGGACTTGTACCAATAACCCCAGTG  450

seq1  TTCTCAGGCCACCAGCCCTGGACGGAGCTGCAGGATCGGCGCCCCTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGGCCACCAGCCCTGGACGGAGCTGCAGGATCGGCGCCCCTGTGT  500

seq1  CGATGGTGATGCTTATACGGGCCAGTCAGAGATGAGACTTTTGTTGTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGGTGATGCTTATACGGGCCAGTCAGAGATGAGACTTTTGTTGTGGT  550

seq1  AACCAGGTAAAC-TTAAACTACAGGTCACAATAAGCTCGGTGGAGCTTGG  599
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AACCAGGTAAACTTTAAACTACAGGTCACAATAAGCTCGGTGGAGCTTGG  600

seq1  GAGCAAGAGGAGAAACC-TTGGGTCTTTCCCACTTCCTCCTGC-TTTTCC  647
      ||||||||||||||||| ||||||||||||||||||||||||| ||||||
seq2  GAGCAAGAGGAGAAACCTTTGGGTCTTTCCCACTTCCTCCTGCTTTTTCC  650

seq1  CACTTTCACAGCAACACTGGGGGAAGGTGGACAAAGGAATAGAGCAATGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCACAGCAACACTGGGGGAAGGTGGACAAAGGAATAGAGCAATGA  700

seq1  CACAGACACACGCGCACACACACACTTATTAGAGAGCCTACCCATCTCTA  747
      ||||||||||||||||||||||||||| ||||||||||||||||||| | 
seq2  CACAGACACACGCGCACACACACACTTTTTAGAGAGCCTACCCATCTTTT  750

seq1  TATAGCAGGGTAAACAGGCTCCCGATAAACGAGATTGTAAGATGC-TTTG  796
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TATAGCAGGGTAAACAGGCTCCCGATAAACGAGATTGTAAGATGCTTTTG  800

seq1  GGGAAACAGAG-AAAGAGGATTTTAATCTCCAGCTCCCACCCGGAGTGTG  845
      ||||||||||| ||||||||||||||||| ||||  ||||||||| ||||
seq2  GGGAAACAGAGAAAAGAGGATTTTAATCTTCAGCCTCCACCCGGATTGTG  850

seq1  GCACTCAGCCAGCTTCTGGATGCTTCAGAGAAGGAAGACTGTTCCTGAAG  895
      || || | ||||||||||||||||||| |||||||| |||||| ||||||
seq2  GC-CTTATCCAGCTTCTGGATGCTTCAAAGAAGGAAAACTGTTTCTGAAG  899

seq1  TTTGTCAGAGGAGACAGTCGGAGACCAGCCACCTAGCAACCAAACTTGCT  945
      ||||||| ||||||||||||||||||||||||||||| | ||||||||||
seq2  TTTGTCA-AGGAGACAGTCGGAGACCAGCCACCTAGCTAACAAACTTGCT  948

seq1  CAGAGTTCCCAGGGGTGCTGCCCCTGCTTG-CTTTTTAAGGAATTTATCT  994
      || | |||||||||  |||||||||||||| ||||||||||||||||  |
seq2  CA-AATTCCCAGGGTGGCTGCCCCTGCTTGTCTTTTTAAGGAATTTACTT  997

seq1  CTGCCATTGGGG  1006
      ||  ||||||||
seq2  CTTGCATTGGGG  1009