BAC Information

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BAC

Clone NameB6Ng01-005M18
Chromosome12 (Build37)
Map Location 103,503,809 - 103,652,110
singlet/doubletdoublet
Overlap geneSlc24a4, Rin3, Lgmn
Upstream gene4932415G16Rik, Mtac2d1, Fbln5, Trip11, Atxn3, LOC100040305, LOC100040297, Cpsf2
Downstream geneGolga5, Chga, Itpk1, Moap1, D230037D09Rik, 5730410I19Rik, Btbd7, EG634678, Cox8c, 9030205A07Rik, LOC667269, Prima1, EG544888, Asb2, Otub2, Ddx24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005M18.bB6Ng01-005M18.g
ACCDH842836DH842837
length547345
definitionDH842836|Mus musculus domesticus DNA, BAC clone: B6Ng01-005M18, 5' end.DH842837|Mus musculus domesticus DNA, BAC clone: B6Ng01-005M18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,651,558 - 103,652,110)(103,503,809 - 103,504,153)
sequence
agagctttgtttgtgtgctctgaaaaaggaaaacaaattgtttaggactt
caaggactcttgttaacctgtaggtgtgagtgtgagtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtatgtgtatgcgtatgcgtaactatgtgcatg
cacaccgaggtatatggataataaaggtggggaatctttaaaaattgaag
ttaaaaaaaaaacgaatgttttaaaaggggaatgaatgaaccccagcgag
tcttcttataagatagaacgtgcccccatatgggcctcctccccggtggt
agttaaaaagttgatggattctttccttctaggcagacgcttgccacgcc
taccagatcatccaccggaacgggattcctgtctagctgatcatagtgat
gatgtatgacgacattgccaactctgaagagtaagtggggtgcgctttga
acttggctgtgaatccgaatttaaaaatactgcctctttaatgctttctg
tgctgcctagggctgtggcccaatttgggaacagttttttcccgtgg
tccatactcgctgatctgacaatagtggacatgacagtcctcagaacaat
gagtaattacaacaaggtcctccctgctctcatgcgcagtcctatgctgt
gcatttcataactatggtattttatttaattctcaccagccctcatgagg
aaggtactattagtcccattttgcagaaaaactcaaggctaagacattaa
gcagaattggggtttgaggccagcttgttctgtctttacagagctctctg
cttggtggaggcagctgtggtccagcccagggaagctttgattcagggat
aagagctagggcagtggggcagtgggggtgagagtaggggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_103651558_103652110
seq2: B6Ng01-005M18.b_45_597 (reverse)

seq1  CCACGGGCTACTCCTGTTCCCAAATTGGGCCGCTGCCCTAGGCAGCACAG  50
      |||||||  |   |||||||||||||||||| | ||||||||||||||||
seq2  CCACGGGAAAAAACTGTTCCCAAATTGGGCCACAGCCCTAGGCAGCACAG  50

seq1  AAAGCCTTAACGTGGCAGTATTTTTAAATTCGGATTCACAGCCAAGTTCA  100
      ||||| |||| | |||||||||||||||||||||||||||||||||||||
seq2  AAAGCATTAAAGAGGCAGTATTTTTAAATTCGGATTCACAGCCAAGTTCA  100

seq1  AAGCGCACCCCACTTACTCTTCAGAGTTGGCAATGTCGTCATACATCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGCACCCCACTTACTCTTCAGAGTTGGCAATGTCGTCATACATCATC  150

seq1  ACTATGATCTGCTCGTCAGGAATCCCGTTCCGGTGGATGATCTGGTAGGC  200
      ||||||||| ||| | ||||||||||||||||||||||||||||||||||
seq2  ACTATGATCAGCTAGACAGGAATCCCGTTCCGGTGGATGATCTGGTAGGC  200

seq1  GTGGCATGCGTCTGCCTAGAAGGAATGACTCCATCAGCTTTTTAGCTACC  250
      |||||| |||||||||||||||||| || ||||||| ||||||| |||||
seq2  GTGGCAAGCGTCTGCCTAGAAGGAAAGAATCCATCAACTTTTTAACTACC  250

seq1  ACCGGGGAGGAGGCCCATCTGGGGGCACGTTCTATCTTATAAGAAGACTC  300
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACCGGGGAGGAGGCCCATATGGGGGCACGTTCTATCTTATAAGAAGACTC  300

seq1  GCTGGGGTTCATTCATTCCCCTTTTAAAACATTCGTTTTTTTTTTAACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGTTCATTCATTCCCCTTTTAAAACATTCGTTTTTTTTTTAACTT  350

seq1  CAATTTTTAAAGATTCCCCACCTTTATTATCCATATACCTCGGTGTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTAAAGATTCCCCACCTTTATTATCCATATACCTCGGTGTGCAT  400

seq1  GCACATAGTTACGCATACGCATACACATACACACACACACACACACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATAGTTACGCATACGCATACACATACACACACACACACACACACAC  450

seq1  ACACACACACACTCACACTCACACCTACAGGTTAACAAGAGTCCTTGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACTCACACTCACACCTACAGGTTAACAAGAGTCCTTGAAG  500

seq1  TCCTAAACAATTTGTTTTCCTTTTTCAGAGCACACAAACAAAGCTCTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAACAATTTGTTTTCCTTTTTCAGAGCACACAAACAAAGCTCTGAA  550

seq1  TTC  553
      |||
seq2  TTC  553

seq1: chr12_103503809_103504153
seq2: B6Ng01-005M18.g_75_419

seq1  TCCACACTCGCTGATCTGACAATAGTGGACATGACAGTCCTCAGAACAAT  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATACTCGCTGATCTGACAATAGTGGACATGACAGTCCTCAGAACAAT  50

seq1  GAGTAATTACAACAAGGTCCTCCCTGCTCTCATGCGCAGTCCTATGCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAATTACAACAAGGTCCTCCCTGCTCTCATGCGCAGTCCTATGCTGT  100

seq1  GCATTTCATAACTATGGTATTTTATTTAATTCTCACCAGCCCTCATGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCATAACTATGGTATTTTATTTAATTCTCACCAGCCCTCATGAGG  150

seq1  AAGGTACTATTAGTCCCATTTTGCAGAAAAACTCAAGGCTAAGACATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTACTATTAGTCCCATTTTGCAGAAAAACTCAAGGCTAAGACATTAA  200

seq1  GCAGAATTGGGGTTTGAGGCCAGCTTGTTCTGTCTTTACAGAGCTCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATTGGGGTTTGAGGCCAGCTTGTTCTGTCTTTACAGAGCTCTCTG  250

seq1  CTTGGTGGAGGCAGCTGTGGTCCAGCCCAGGGAAGCTTTGATTCAGGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGGAGGCAGCTGTGGTCCAGCCCAGGGAAGCTTTGATTCAGGGAT  300

seq1  AAGAGCTAGGGCAGTGGGGCAGTGGGGGTGAGAGTAGGGGTGGGG  345
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTAGGGCAGTGGGGCAGTGGGGGTGAGAGTAGGGGTGGGG  345