BAC Information

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BAC

Clone NameB6Ng01-006B10
Chromosome19 (Build37)12 (Build37)
Map Location 16,111,322 - 16,112,13111,163,573 - 11,164,259
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG635497, Pomc-ps1, LOC667482, Psat1, LOC100041424, Cep78, LOC100042048
Downstream geneGnaq, E030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a, Foxb2, A230083H22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006B10.bB6Ng01-006B10.g
ACCDH843045DH843046
length808821
definitionDH843045|Mus musculus domesticus DNA, BAC clone: B6Ng01-006B10, 5' end.DH843046|Mus musculus domesticus DNA, BAC clone: B6Ng01-006B10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(16,111,322 - 16,112,131)(11,163,573 - 11,164,259)
sequence
gaattcagtagcctacccctgaaggacaagagaaccaactcctgaaagtt
gtcttttgaatattttactatgtgcacacacatacacacaacacatacac
acacacacacacacacacacatacacacacactaaatgtagtataaattt
agtaagaattctaaatataaacattcaaagtcatttttattgcaccgtaa
gttacacgggtagcttgctgaaagttctagggcaaaaaaaacgggaagcc
gaaaattcatcttgcacctcaccagctaaacggagttgaaaggcacttgc
ttttcatgatagatttgccactgtgtgcaaacttatcctatgatctcttc
ttacctcgctagttgtgttatccagtcagggcaggttaagtaggctgttg
gacaagctctgctcagtatggcccctcccccctaatcttcttcagatagg
agcttactgtgtagccaaggctggccttgaactctcaatccttctgcctc
cgtgtctggagtactgagatacagtcctgtgccatcacgctcaacttcaa
ggatacctcttagggctgggggtgttctaggtggcagtgtacatcttgac
agccggagtcatgcctgtccgtttctgagcatgcccacaaaacctctagt
acgttctctgaggatagttcagaagtgctcactgaaactaactgacatca
cttgataactgagtcttctttccattgtatcatcagacagtttggtttgt
gatgggtttatagcagaagagcatacctgggtgtaggagttgggtttgtg
atggttta
gaattcttgtgttgaaggcaggcactaaccaactgctaaatccccaaatg
cctcgcttcaggttgtttttttttttttttttttttttttttgcgataaa
tttaggtctacctagtatttggaacttgtttttgaagggtatgtctagga
cagaagctgcttaacacagccggtggggatttctgcttcctccggagttg
catctacattcattgcctaagtgactgattcttcccttttgtctggagag
attccagttttaaacggaaagtccagcatcccaggaacaccatcattgcg
atgcaaaccgggacatttggccgtcctcttggcgtatttctgtggaagat
aaaattttcatatcctggccttgcgtgagctgaaagaaagcacataactg
aaggcttcaccctggggcaccgatggaaatggtgcattcattttcttgaa
tgtatcctcaaaggaagtcgggagagcacctcctcgttttctgcctttat
gctctttgaaatgcagaaaagacagctggacacagacttgatacctagac
gcacacaaagtcgccatgcagtaaggaaggcagagcagggttaccagcag
gaagtgggtcatctgagcctgaacttccctcactcatacaaggcaaatac
atttatatcttacttaaagttttttctacttgaagttttatacagcttaa
atgctgactcccatgggctcctctatgtatacatgttcatgtgtgtacat
gtgcatgtgtgcacacatcttatgagagggtcagatgtcaatatcaagtg
tcttcctatagtgctctacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_16111322_16112131
seq2: B6Ng01-006B10.b_41_848 (reverse)

seq1  TAAACCCATCACAAACCAAACTCCTACACCCAGGTATGCTCTTCTGCTAT  50
      |||| |||||||||||| ||||||||||||||||||||||||||||||||
seq2  TAAA-CCATCACAAACCCAACTCCTACACCCAGGTATGCTCTTCTGCTAT  49

seq1  AAACCCATCACAAACCAAACTGTCTGATGATACAATGGAAAGAAGACTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCATCACAAACCAAACTGTCTGATGATACAATGGAAAGAAGACTCA  99

seq1  GTTATCAAGTGATGTCAGTTAGTTTCAGTGAGCACTTCTGAACTATCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCAAGTGATGTCAGTTAGTTTCAGTGAGCACTTCTGAACTATCCTC  149

seq1  AGAGAACCTACTAGAGGTTTTGTGGGCATGCTCAGAAACGGACAGGCATG  200
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACGTACTAGAGGTTTTGTGGGCATGCTCAGAAACGGACAGGCATG  199

seq1  ACTCCGGCTGTCAAGATGTACACTGCCACCTAGAACACCCCCAGCCCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCGGCTGTCAAGATGTACACTGCCACCTAGAACACCCCCAGCCCTAA  249

seq1  GAGGTATCCTTGAAGTTGAGCGTGATGGCACAGGACTGTATCTCAGTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATCCTTGAAGTTGAGCGTGATGGCACAGGACTGTATCTCAGTACT  299

seq1  CCAGACACGGAGGCAGAAGGATTGAGAGTTCAAGGCCAGCCTTGGCTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACACGGAGGCAGAAGGATTGAGAGTTCAAGGCCAGCCTTGGCTACA  349

seq1  CAGTAAGCTCCTATCTGAAGAAGATTAGGGGGGAGGGGCCATACTGAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGCTCCTATCTGAAGAAGATTAGGGGGGAGGGGCCATACTGAGCA  399

seq1  GAGCTTGTCCAACAGCCTACCTAACCTGCCCTGACTGGATAACACAACTA  450
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAGCTTGTCCAACAGCCTACTTAACCTGCCCTGACTGGATAACACAACTA  449

seq1  GCGAGGTAAGAAGAGATCATAGGATAAGTTTGCACACAGTGGCAAATCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGGTAAGAAGAGATCATAGGATAAGTTTGCACACAGTGGCAAATCTA  499

seq1  TCATGAAAAGCAAGTGCCTTTCAACTCCGTTTAGCTGGTGAGGTGCAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAAAGCAAGTGCCTTTCAACTCCGTTTAGCTGGTGAGGTGCAAGA  549

seq1  TGAATCTTCGGCTTCCCGTTTTTTCTGCCCTAGAACTTTCAGCAAGCTAC  600
      ||||| |||||||||||||||||| |||||||||||||||||||||||||
seq2  TGAATTTTCGGCTTCCCGTTTTTTTTGCCCTAGAACTTTCAGCAAGCTAC  599

seq1  CCGTGTAACTTACGGTGCAATAAAAATGACTTTGAATGTTTATATTTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTAACTTACGGTGCAATAAAAATGACTTTGAATGTTTATATTTAGA  649

seq1  ATTCTTACTAAATTTATACTACATTTAGTGTGTGTGTATGTGTGTGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTACTAAATTTATACTACATTTAGTGTGTGTGTATGTGTGTGTGTG  699

seq1  TGTGTGTGTGTGTATGTGTTGTGTGTATGTGTGTGCACATAGTAAAATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTATGTGTTGTGTGTATGTGTGTGCACATAGTAAAATAT  749

seq1  TCAAAAGACAACTTTCAGGAGTTGGTTCTCTTCTCCTTCAGGGGTCTGGC  800
      |||||||||||||||||||||||||||||||| ||||||||||||  |||
seq2  TCAAAAGACAACTTTCAGGAGTTGGTTCTCTTGTCCTTCAGGGGT-AGGC  798

seq1  TACTGAATTC  810
      ||||||||||
seq2  TACTGAATTC  808

seq1: chr12_11163573_11164259
seq2: B6Ng01-006B10.g_196_884

seq1  TGAAGGGTATGTCTAGGACAGAAGCTGCAGAACACATCCAATGTGGTTTT  50
      ||||||||||||||||||||||||||||  |||||| ||  || || |||
seq2  TGAAGGGTATGTCTAGGACAGAAGCTGCTTAACACAGCCGGTGGGGATTT  50

seq1  CTGCTTCCTCGGGAGTAGCATCTACAGTCATTGCCTAAGTGACTGATTCT  100
      |||||||||| ||||| ||||||||| |||||||||||||||||||||||
seq2  CTGCTTCCTCCGGAGTTGCATCTACATTCATTGCCTAAGTGACTGATTCT  100

seq1  TCCCTTTTGTCTGGAGAGATTCCAGTTTTAAACGGAAAGTCCAGCATCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTTGTCTGGAGAGATTCCAGTTTTAAACGGAAAGTCCAGCATCCC  150

seq1  AGGAACACCATCAGTGCAGGGCAAACCGGGACAGTTGCCCGTCCTCTTGG  200
      ||||||||||||| |||   ||||||||||||| ||| ||||||||||||
seq2  AGGAACACCATCATTGCGATGCAAACCGGGACATTTGGCCGTCCTCTTGG  200

seq1  CGTATTTCTGTGGAAGATAAAATTTTCATATCCTGGCATTGCATGAGCTG  250
      ||||||||||||||||||||||||||||||||||||| |||| |||||||
seq2  CGTATTTCTGTGGAAGATAAAATTTTCATATCCTGGCCTTGCGTGAGCTG  250

seq1  CAGGAAAGCACATAACTGAAGGCTTCACAGTGGGGCACCAGTGGAAATGG  300
       | |||||||||||||||||||||||||  |||||||||  |||||||||
seq2  AAAGAAAGCACATAACTGAAGGCTTCACCCTGGGGCACCGATGGAAATGG  300

seq1  TGCATTCAGTTTCTTGAATGTATCCTCAAAGGAAGTCGGGAGAGCACCTC  350
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCATTTTCTTGAATGTATCCTCAAAGGAAGTCGGGAGAGCACCTC  350

seq1  CTCGTTTTCTGCCTTTAGGCTCTTTGAAATGCAGAAAAGACAGCTGGACA  400
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTCGTTTTCTGCCTTTATGCTCTTTGAAATGCAGAAAAGACAGCTGGACA  400

seq1  CAGACTTGATACCTAGACGCACACAAAGTCGCCATGCAGTAAGGAAGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTGATACCTAGACGCACACAAAGTCGCCATGCAGTAAGGAAGGCA  450

seq1  GAGCAAGGTTACCAGCAGGAAGTGGGTCATCTGAGCCTGAACTTCCCTCA  500
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGGTTACCAGCAGGAAGTGGGTCATCTGAGCCTGAACTTCCCTCA  500

seq1  CTCATACAAGGGAAATACATTTATATCTTACTTAAA-CTATTTCTACTTG  549
      ||||||||||| ||||||||||||||||||||||||  | ||||||||||
seq2  CTCATACAAGGCAAATACATTTATATCTTACTTAAAGTTTTTTCTACTTG  550

seq1  AAGTTTTATACAGCTT-AAGGCTGACTCCCATGGGCTCCTCTATGTATAC  598
      |||||||||||||||| || ||||||||||||||||||||||||||||||
seq2  AAGTTTTATACAGCTTAAATGCTGACTCCCATGGGCTCCTCTATGTATAC  600

seq1  ATGTTCATGTGTGTACATGTGCATGTGTGCACACATCTTATGTGAGGGTC  648
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATGTTCATGTGTGTACATGTGCATGTGTGCACACATCTTATGAGAGGGTC  650

seq1  AGAGGTCAATATCAGGTGTCTTCCTATAGTGCTCTACCT  687
      ||| |||||||||| ||||||||||||||||||||||||
seq2  AGATGTCAATATCAAGTGTCTTCCTATAGTGCTCTACCT  689