BAC Information

Click to search

BAC

Clone NameB6Ng01-006G16
Chromosome12 (Build37)
Map Location 109,911,851 - 110,048,623
singlet/doubletdoublet
Overlap geneEvl, Degs2, LOC668164, Yy1
Upstream geneBcl11b, Setd3, Ccnk, EG668158, 1600002O04Rik, Cyp46a1, Eml1
Downstream geneSlc25a29, AI132487, Wars, Wdr25, BM948371, LOC668194, Dlk1, Gtl2, Rtl1, 6430411K18Rik, B830012L14Rik, LOC100040715, LOC100040724
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006G16.bB6Ng01-006G16.g
ACCDH843282DH843283
length1,1811,070
definitionDH843282|Mus musculus domesticus DNA, BAC clone: B6Ng01-006G16, 5' end.DH843283|Mus musculus domesticus DNA, BAC clone: B6Ng01-006G16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,047,430 - 110,048,623)(109,911,851 - 109,912,911)
sequence
gaattcattctttaaaattgtattatttatgcttaacaacccgtaaggtt
ctgatattctaaattatctttcaaccaaaaaaccctaagatactgaaagg
aaaaagacaagcataaagccaccctcaacagctttttactctacttgcta
ctcagttttattaaactggagggcatgttgaaagacacgctgcttaaact
gacattacctccaactcatcctgtcacatgtggaaggagcaccaccacaa
agactgaactccacaagtcacatctgcagcatcttcccaacagttttagc
agagccctggatgtagcaaagatgagtcttctggcagtaagctaggaagt
acaagtctccccagtacaataaacttagaaccaggatgtaggacctcagc
tgctgagacagtccattatcactcagctatcatctgccagcatcaaggtc
tcattatggagcccagggtggccttgaactggcaatccttctgcctcggc
ctctcaagtgctggaattacaggtagttgttcacttaccacacccagcag
cctacaggatatcacagtccagctttaaggaaatatacaataaagaactg
cctagctaaaattaggagacataaattactcaccaggccctagtctctga
acacagtttttcaaaaacagacaactcagtaaaatacccccacctcccct
ctgtggtcccacctcaaaactcagaacccttgttttcaggggtggtgtca
ggtcaagacaggctttcactgtgtctagctatcctggaaacccctcagaa
gaccaggctggcctcaaactcacagggaacctctgtcccctgacagctgg
aattactggcatgagccaccaccacctgatattattattattattttttg
agacagcactcatgtatcccaggtccagcttcaaacacactatgcagcta
aagttgactatgtgcctctcctgagcactactggatagacacacagcact
tgacttacatgtaagcctagggtttcctgcatacaagacaagcacttctg
aaaccagcaatccgaccctccagctttaaagacagacttcaaataaatca
atacttttttttcttttaacctatgtctatgtagacgagctaaccgagtt
ggcggttaggacaattcttgtctcaagctag
gaattcagttggccagagggtcacacaggtttctctgaggtatttactac
tcagtgtgtccagctcatcagtcctcttccatctgtctctgtctctgttg
gaggcagcccagggctacaggaaggttagctcagccagtgacgtgcttgc
agggcgctgagtagagctccagcactcttttgttttgttttgttttgttt
tccttaaaaagttagatgtggcatcagccacttgaataccagagtttagg
aggcaaaggcaaacagacaaaccctggtgttcattggccagccagccttg
cctacttgctaagttctagatcaattagagaccctttctgaaaagaaaag
gaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaag
gaaaggaaaggaaaggaaagaaagccgggcatggtggcgcacgcctttaa
tcccagtacttaggaggcagaggcaggcggatttctgagttcgaggccag
cctggtctacagagtgagttccaggacagccagggctacacagagaaacc
ctgtctcgaaaaaccaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaagaa
aagagaagaaagtgggtggtgcctatgacagcactcagggtaatcctttt
tcctccacacaaacaaagcccagtgttatgggtatgagaagtaccacagc
agcagcttttaaatgtgggagcgtgggcacagagagctcaaggtgtctgc
tgtgattgctttccagacaagtaatggagcagcagcaccgccaggagtct
ctggagaggagaaatctcggccacaggtagggggagactccctccttcca
gccctgttccgaggctcctgaccccccagtgcatcctcatggcaaaccac
cttacctgctttttcaacaccctgtcctcttcagctgctgcagcacctcc
ctctccctccgctgctcaggcctctgaacatggcttggagcaagtctagt
tctaccagcatgtcctcccttccattcgtctcatcctcttggctcagcac
tacttccttcactgtcctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_110047430_110048623
seq2: B6Ng01-006G16.b_43_1223 (reverse)

seq1  CTAGACTTGAAGACAAGAA-TGTCTTAAACTGCCACCCTCTGTTTAGACT  49
      |||| |||| ||||||||| |||| | ||| ||||  ||| | |||| ||
seq2  CTAG-CTTG-AGACAAGAATTGTCCT-AACCGCCA-ACTC-GGTTAG-CT  44

seq1  GCTTAACATAGACATAAGTTTAAAAAGAAAAAAAAGTAATGAATTTTATT  99
        |  ||||||||||| |||  |||||||||||||||| |||  ||||||
seq2  CGTCTACATAGACATAGGTT--AAAAGAAAAAAAAGTATTGA--TTTATT  90

seq1  TGGAAGTTCTGTCTTTAAAGCTGGAGGGTCGGATTGCTTGGTTTTCAGAA  149
      | |||| |||||||||||||||||||||||||||||||  | ||||||||
seq2  T-GAAG-TCTGTCTTTAAAGCTGGAGGGTCGGATTGCT--GGTTTCAGAA  136

seq1  GTGCTTGTCTTGTATGCAGGAAACCCTAGGCTTACATGTAAGTCAAGTGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGTCTTGTATGCAGGAAACCCTAGGCTTACATGTAAGTCAAGTGC  186

seq1  TGTGTGTCTATCCAGTAGTGCTCAGGAGAGGCACATAGTCAACCTTAGCT  249
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGTGTGTCTATCCAGTAGTGCTCAGGAGAGGCACATAGTCAACTTTAGCT  236

seq1  GCATAGTGTGTTTGAAGCTGGACCTGGGATACATGAGTGCTGTCTCAAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGTGTGTTTGAAGCTGGACCTGGGATACATGAGTGCTGTCTCAAAA  286

seq1  AATAATAATAATAATATCAGGTGGTGGTGGCTCATGCCAGTAATTCCAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATAATAATATCAGGTGGTGGTGGCTCATGCCAGTAATTCCAGC  336

seq1  TGTCAGGGGACAGAGGTTCCCTGTGAGTTTGAGGCCAGCCTGGTCTTCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGGGACAGAGGTTCCCTGTGAGTTTGAGGCCAGCCTGGTCTTCTG  386

seq1  AGGGGTTTCCAGGATAGCTAGACACAGTGAAAGCCTGTCTTGACCTGACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTTCCAGGATAGCTAGACACAGTGAAAGCCTGTCTTGACCTGACA  436

seq1  CCACCCCTGAAAACAAGGGTTCTGAGTTTTGAGGTGGGACCACAGAGGGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCTGAAAACAAGGGTTCTGAGTTTTGAGGTGGGACCACAGAGGGG  486

seq1  AGGTGGGGGTATTTTACTGAGTTGTCTGTTTTTGAAAAACTGTGTTCAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGGGTATTTTACTGAGTTGTCTGTTTTTGAAAAACTGTGTTCAGA  536

seq1  GACTAGGGCCTGGTGAGTAATTTATGTCTCCTAATTTTAGCTAGGCAGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGGGCCTGGTGAGTAATTTATGTCTCCTAATTTTAGCTAGGCAGTT  586

seq1  CTTTATTGTATATTTCCTTAAAGCTGGACTGTGATATCCTGTAGGCTGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTGTATATTTCCTTAAAGCTGGACTGTGATATCCTGTAGGCTGCT  636

seq1  GGGTGTGGTAAGTGAACAACTACCTGTAATTCCAGCACTTGAGAGGCCGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGGTAAGTGAACAACTACCTGTAATTCCAGCACTTGAGAGGCCGA  686

seq1  GGCAGAAGGATTGCCAGTTCAAGGCCACCCTGGGCTCCATAATGAGACCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAGGATTGCCAGTTCAAGGCCACCCTGGGCTCCATAATGAGACCT  736

seq1  TGATGCTGGCAGATGATAGCTGAGTGATAATGGACTGTCTCAGCAGCTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTGGCAGATGATAGCTGAGTGATAATGGACTGTCTCAGCAGCTGA  786

seq1  GGTCCTACATCCTGGTTCTAAGTTTATTGTACTGGGGAGACTTGTACTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTACATCCTGGTTCTAAGTTTATTGTACTGGGGAGACTTGTACTTC  836

seq1  CTAGCTTACTGCCAGAAGACTCATCTTTGCTACATCCAGGGCTCTGCTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTACTGCCAGAAGACTCATCTTTGCTACATCCAGGGCTCTGCTAA  886

seq1  AACTGTTGGGAAGATGCTGCAGATGTGACTTGTGGAGTTCAGTCTTTGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTGGGAAGATGCTGCAGATGTGACTTGTGGAGTTCAGTCTTTGTG  936

seq1  GTGGTGCTCCTTCCACATGTGACAGGATGAGTTGGAGGTAATGTCAGTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCTCCTTCCACATGTGACAGGATGAGTTGGAGGTAATGTCAGTTT  986

seq1  AAGCAGCGTGTCTTTCAACATGCCCTCCAGTTTAATAAAACTGAGTAGCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCGTGTCTTTCAACATGCCCTCCAGTTTAATAAAACTGAGTAGCA  1036

seq1  AGTAGAGTAAAAAGCTGTTGAGGGTGGCTTTATGCTTGTCTTTTTCCTTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGTAAAAAGCTGTTGAGGGTGGCTTTATGCTTGTCTTTTTCCTTT  1086

seq1  CAGTATCTTAGGGTTTTTTGGTTGAAAGATAATTTAGAATATCAGAACCT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATCTTAGGGTTTTTTGGTTGAAAGATAATTTAGAATATCAGAACCT  1136

seq1  TACGGGTTGTTAAGCATAAATAATACAATTTTAAAGAATGAATTC  1194
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGGTTGTTAAGCATAAATAATACAATTTTAAAGAATGAATTC  1181

seq1: chr12_109911851_109912911
seq2: B6Ng01-006G16.g_67_1136

seq1  GAATTCAGTTGGCCAGAGGGTCACACAGGTTTCTCTGAGGTATTTACTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTGGCCAGAGGGTCACACAGGTTTCTCTGAGGTATTTACTAC  50

seq1  TCAGTGTGTCCAGCTCATCAGTCCTCTTCCATCTGTCTCTGTCTCTGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTGTCCAGCTCATCAGTCCTCTTCCATCTGTCTCTGTCTCTGTTG  100

seq1  GAGGCAGCCCAGGGCTACAGGAAGGTTAGCTCAGCCAGTGACGTGCTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGCCCAGGGCTACAGGAAGGTTAGCTCAGCCAGTGACGTGCTTGC  150

seq1  AGGGCGCTGAGTAGAGCTCCAGCACTCTTTTGTTTTGTTTTGTTTTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCGCTGAGTAGAGCTCCAGCACTCTTTTGTTTTGTTTTGTTTTGTTT  200

seq1  TCCTTAAAAAGTTAGATGTGGCATCAGCCACTTGAATACCAGAGTTTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAAAAGTTAGATGTGGCATCAGCCACTTGAATACCAGAGTTTAGG  250

seq1  AGGCAAAGGCAAACAGACAAACCCTGGTGTTCATTGGCCAGCCAGCCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAGGCAAACAGACAAACCCTGGTGTTCATTGGCCAGCCAGCCTTG  300

seq1  CCTACTTGCTAAGTTCTAGATCAATTAGAGACCCTTTCTGAAAAGAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTGCTAAGTTCTAGATCAATTAGAGACCCTTTCTGAAAAGAAAAG  350

seq1  GAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAG  400

seq1  GAAAGGAAAGGAAAGGAAAGAAAGCCGGGCATGGTGGCGCACGCCTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAAAGGAAAGGAAAGAAAGCCGGGCATGGTGGCGCACGCCTTTAA  450

seq1  TCCCAGTACTTAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTACTTAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAG  500

seq1  CCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACC  550

seq1  CTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAA  600

seq1  AAGAGAAGAAAGTGGGTGGTGCCTATGACAGCACTCAGGGTAATCCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGAAAGTGGGTGGTGCCTATGACAGCACTCAGGGTAATCCTTTT  650

seq1  TCCTCCACACAAACAAAGCCCAGTGTTATGGGTATGAGAAGTACCACAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCACACAAACAAAGCCCAGTGTTATGGGTATGAGAAGTACCACAGC  700

seq1  AGCAGCTTTTAAATGTGGGAGCGTGGGCACAGAGAGCTCAAGGTGTCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTTTTAAATGTGGGAGCGTGGGCACAGAGAGCTCAAGGTGTCTGC  750

seq1  TGTGATTGCTTTCCAGACAAGTAATGGAGCAGCAGCACCGCCAGGAGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTGCTTTCCAGACAAGTAATGGAGCAGCAGCACCGCCAGGAGTCT  800

seq1  CTGGAGAGGAG-AATCTCGGCCACAGGTA-GGGGAGACTCCCTCC-TCCA  847
      ||||||||||| ||||||||||||||||| ||||||||||||||| ||||
seq2  CTGGAGAGGAGAAATCTCGGCCACAGGTAGGGGGAGACTCCCTCCTTCCA  850

seq1  GCCCTG-TCCGAGGC-CCTGACCCCCCAGTGCATCCTCATGGCAAACCAC  895
      |||||| |||||||| ||||||||||||||||||||||||||||||||||
seq2  GCCCTGTTCCGAGGCTCCTGACCCCCCAGTGCATCCTCATGGCAAACCAC  900

seq1  CTTACCTGCTTTTCCAACACCCTGTCCTC-TCAGCTGCTGCAGCACCTCC  944
      ||||||||||||| ||||||||||||||| ||||||||||||||||||||
seq2  CTTACCTGCTTTTTCAACACCCTGTCCTCTTCAGCTGCTGCAGCACCTCC  950

seq1  CTC-CCCTCCGCTGCCCAGGCCTCTGAACATGGCTT-GAGCAAGTCTAGT  992
      ||| ||||||||||| |||||||||||||||||||| |||||||||||||
seq2  CTCTCCCTCCGCTGCTCAGGCCTCTGAACATGGCTTGGAGCAAGTCTAGT  1000

seq1  TCTACCAGCATGT-CTCCCTCCCATACGTCCCATCCTCTTGGCTCAGCAC  1041
      ||||||||||||| |||||| |||| |||| |||||||||||||||||||
seq2  TCTACCAGCATGTCCTCCCTTCCATTCGTCTCATCCTCTTGGCTCAGCAC  1050

seq1  TACTTCCTTCACTGTCCTGA  1061
      ||||||||||||||||||||
seq2  TACTTCCTTCACTGTCCTGA  1070