BAC Information

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BAC

Clone NameB6Ng01-006H07
Chromosome12 (Build37)
Map Location 51,016,370 - 51,017,542
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665036, LOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424, LOC665071, LOC665077, LOC100039455
Downstream genePrkcm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006H07.bB6Ng01-006H07.g
ACCDH843309DH843310
length1,1461,210
definitionDH843309|Mus musculus domesticus DNA, BAC clone: B6Ng01-006H07, 5' end.DH843310|Mus musculus domesticus DNA, BAC clone: B6Ng01-006H07, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattgaactctggcagtgtccttggatgaatgaatgaaggctgca
tgcccaatgtttgtcccattagagaaaatgtgtattttatcaatgatcat
ttttatcatgacttcattacctacttcttcaggacctgtttcgtaaacat
tgatattgacattaagtatgaatcaaacataactgtcttattaactagag
agtgctataatcatctccaatctccattgtcacctgatctgcaattgctc
atgtaggcagaattctaaaaaaaaaaaaactcaacttttttctttctaca
ttttctctagtgcacacaccaatattaatgacttaaagagtagaacttgt
gagatgctaccaggaaaatccaaagtcctatgagttcatgctgaacacag
tgacagatactaggatgagtggtcctggcttaggaattaggaacaaataa
tatgggaactatgagcaaatattatataatcaaggaaataaacagcttct
attaaacaagtgcaattaccttatgaattctaaagcttcgtatcactgag
caaaaggcaagaatactgatttcaatttcaaaatcattatcaatagtgta
taacacattgtcaaacaaatgcacggctcttgctgtgcagtctgctcctg
ttggcatttggcagcctgaacacactgtcatggtatctaatgctcatatt
ttttccaaacataacaaaaggagaacaaaactctgcaaattattggaaaa
tattagcaagcactaatatccgtgtattttttgatagatttggacaagag
acaagttcccagttgctttcttccctgatatccaatgggatgtactttgg
tcaaatattgcatttaacagtaacaaaagagcattttgaaaaataattac
ttattttgttgttttattggttatttatttatttacatttcaaatgttaa
ccccttttcggtttctctcagaaatcccttatcccagcctcctctcctga
ttctatgaggtgctccctacacccacacactctactcacaccctgcattc
cctacactggggcatcagctcaaagaacaaggtctctcctccattgagtc
taattgcgatcttctgctacataatgcgcttgacatagtccctcca
gaattccacatgaaaccagagacactgaaacttatagaggagaaagtggg
ggaaagcctcgaatatctgggcacaggggaaaaattcctgaacagaacag
caatggcttgtgctctaagattgagaattgacaaatgggacatcataaaa
ttgcaaagcatctgtaagggaaaagatactgtcaataggaaaaaaaggcc
aacaatagtttgggaaaggatcttcaccaattctaaatcagataggggac
taatatccaatatatatatatatatctcaagaaagtagactccagaaaat
caaataaccccattaaaaatgaggcaaaaagctaaacaaagaattctcaa
ctgaggaatatagaatagctgagaagcacctgaaaaaaacgttcaacatc
cttaatcatcagagaaaggcaaaccaaaacatccctgagattccacctca
caccagtcagaatggctaagatcaaaaattcatgtgacagcagatgctgg
tggggatgtgaagaaagagggacactcctccattgttggttcgattgcaa
gcttgtacaaccactctggaaatcaatctggaagttcctcagaaaattgg
acatagttctactggaggatccagtaatacatctcctgggcatatatcca
gaagatgttccaactggtaataagaacacatgctccactatgttcaaagc
agccttattcataatagccagaaacttgaaagaacccagatgtccttcaa
cagaggaatggatacagaaaaattggtacatttgcacaatggagtactac
tcagcaattcagaacaatgaatttatgaaattcctaggcaaattgatgga
tctggagggcattatcctgagtgagataacccagtcacaaaggaactcac
atgatatgcactcactggtaagtggatataacccagaaacttagaatatc
tagatacaatttgcaaacctcaaaaaatcagagaagcagaccaagtgggg
atattcacttcttctagatggactacccccccctgaagagttacagagac
aagttgaggctgagatgtatagatgaccatcagagactgccccactgggg
atccattccattattcagccacattgccgaaacctatgcaatggcacaga
tttgtgacgactgaaatagcgtcctgggaagctatgcagtgtctggtgca
aacagaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_51016370_51017542
seq2: B6Ng01-006H07.b_47_1192 (reverse)

seq1  TGGAGGGACCTATGGTTCCAGCCGCA-TATGTAGCAGAAGATCGCAATAT  49
      |||||||| |||||  || || |||| ||||||||||||||||||||| |
seq2  TGGAGGGA-CTATG--TCAAG-CGCATTATGTAGCAGAAGATCGCAAT-T  45

seq1  AGGACATCAATGGGAGGAGAGACCCTTGGTCTTTTGAAGGCTCGATGCCC  99
      | ||| ||||| |||||||||| ||||| || |||||  ||| |||||||
seq2  A-GAC-TCAAT-GGAGGAGAGA-CCTTGTTC-TTTGA--GCT-GATGCCC  87

seq1  CAGTGTAGGGGAATGCCAGGGTGTGGAGGTAGGAGTGTGTGGGTGGTAGG  149
      ||||||| ||||||| |||||||||   ||| |||||||||||| ||| |
seq2  CAGTGTA-GGGAATG-CAGGGTGTG--AGTA-GAGTGTGTGGGT-GTA-G  130

seq1  GGAGCAACCTCATAGAATCAGGGAGAGGGAGGCTGGGATAAGGGATTTCT  199
      ||||| |||||||||||||| ||||| |||||||||||||||||||||||
seq2  GGAGC-ACCTCATAGAATCA-GGAGA-GGAGGCTGGGATAAGGGATTTCT  177

seq1  GGAGGAGAAACCGGAAAAGGGGTTAACATTTGAAATGTAAATAAATAAAA  249
      |   |||||||| ||||||||||||||||||||||||||||||||| |||
seq2  G--AGAGAAACC-GAAAAGGGGTTAACATTTGAAATGTAAATAAAT-AAA  223

seq1  TAACCAATAAAAACAACAAAATAAGTAATTATTTTTCAAAATGCTCTTTT  299
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAAT-AAAACAACAAAATAAGTAATTATTTTTCAAAATGCTCTTTT  272

seq1  GTTACTGTTAAATGCAATATTTGACCAAAGTACATCCCATTGGATATCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTGTTAAATGCAATATTTGACCAAAGTACATCCCATTGGATATCAG  322

seq1  GGAAGAAAGCAACTGGGAACTTGTCTCTTGTCCAAATCTATCAAAAAATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAGCAACTGGGAACTTGTCTCTTGTCCAAATCTATCAAAAAATA  372

seq1  CACGGATATTAGTGCTTGCTAATATTTTCCAATAATTTGCAGAGTTTTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGATATTAGTGCTTGCTAATATTTTCCAATAATTTGCAGAGTTTTGT  422

seq1  TCTCCTTTTGTTATGTTTGGAAAAAATATGAGCATTAGATACCATGACAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTTTGTTATGTTTGGAAAAAATATGAGCATTAGATACCATGACAG  472

seq1  TGTGTTCAGGCTGCCAAATGCCAACAGGAGCAGACTGCACAGCAAGAGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCAGGCTGCCAAATGCCAACAGGAGCAGACTGCACAGCAAGAGCC  522

seq1  GTGCATTTGTTTGACAATGTGTTATACACTATTGATAATGATTTTGAAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATTTGTTTGACAATGTGTTATACACTATTGATAATGATTTTGAAAT  572

seq1  TGAAATCAGTATTCTTGCCTTTTGCTCAGTGATACGAAGCTTTAGAATTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCAGTATTCTTGCCTTTTGCTCAGTGATACGAAGCTTTAGAATTC  622

seq1  ATAAGGTAATTGCACTTGTTTAATAGAAGCTGTTTATTTCCTTGATTATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGTAATTGCACTTGTTTAATAGAAGCTGTTTATTTCCTTGATTATA  672

seq1  TAATATTTGCTCATAGTTCCCATATTATTTGTTCCTAATTCCTAAGCCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTGCTCATAGTTCCCATATTATTTGTTCCTAATTCCTAAGCCAG  722

seq1  GACCACTCATCCTAGTATCTGTCACTGTGTTCAGCATGAACTCATAGGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTCATCCTAGTATCTGTCACTGTGTTCAGCATGAACTCATAGGAC  772

seq1  TTTGGATTTTCCTGGTAGCATCTCACAAGTTCTACTCTTTAAGTCATTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATTTTCCTGGTAGCATCTCACAAGTTCTACTCTTTAAGTCATTAA  822

seq1  TATTGGTGTGTGCACTAGAGAAAATGTAGAAAGAAAAAAGTTGAGTTTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTGTGTGCACTAGAGAAAATGTAGAAAGAAAAAAGTTGAGTTTTT  872

seq1  TTTTTTTTAGAATTCTGCCTACATGAGCAATTGCAGATCAGGTGACAATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAGAATTCTGCCTACATGAGCAATTGCAGATCAGGTGACAATG  922

seq1  GAGATTGGAGATGATTATAGCACTCTCTAGTTAATAAGACAGTTATGTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGGAGATGATTATAGCACTCTCTAGTTAATAAGACAGTTATGTTT  972

seq1  GATTCATACTTAATGTCAATATCAATGTTTACGAAACAGGTCCTGAAGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATACTTAATGTCAATATCAATGTTTACGAAACAGGTCCTGAAGAA  1022

seq1  GTAGGTAATGAAGTCATGATAAAAATGATCATTGATAAAATACACATTTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTAATGAAGTCATGATAAAAATGATCATTGATAAAATACACATTTT  1072

seq1  CTCTAATGGGACAAACATTGGGCATGCAGCCTTCATTCATTCATCCAAGG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATGGGACAAACATTGGGCATGCAGCCTTCATTCATTCATCCAAGG  1122

seq1  ACACTGCCAGAGTTCAATGAATTC  1173
      ||||||||||||||||||||||||
seq2  ACACTGCCAGAGTTCAATGAATTC  1146