BAC Information

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BAC

Clone NameB6Ng01-006L05
Chromosome12 (Build37)4 (Build37)
Map Location 62,385,777 - 62,386,451133,803,703 - 133,804,206
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC665665, Ppia-ps12_475.1, LOC100040300
Downstream geneLOC665677, Nanog-ps2, Lrfn5, LOC665699, LOC665707, LOC100040403, LOC665713, LOC622746
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006L05.bB6Ng01-006L05.g
ACCDH843488DH843489
length911504
definitionDH843488|Mus musculus domesticus DNA, BAC clone: B6Ng01-006L05, 5' end.DH843489|Mus musculus domesticus DNA, BAC clone: B6Ng01-006L05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(62,385,777 - 62,386,451)(133,803,703 - 133,804,206)
sequence
gaattcaacacctgcactcgggaggcatcaggaatcttttatgtccttca
ttaaactattggacataattttcctgatgggataatattgtagtttattt
gattcacatcagggtaggactatgtcctttgacactattcctggtgagat
aaaagtaaaggtgtactcactatgaaaatgaactgacaacagtccaacgt
aaagaaagccctgaagtccagttgttgagtgaatgggtttcttggtgttg
ctttcatgaatatctgtgaggtgttacttatagaagcagaaataactgaa
aaaaaagagctgtatcactaatagtcaagcatatcataggtaacagctat
caaaaattggaaacatggaatactcttcacaaccagcagtcagtttagga
gactagagagtgcccttcccaaggagcccagtttgtatgagctcagcttg
tctgaaagaggctcttggtagtccttactgcttttatacttggggaagaa
ggaatatggttagtttcaggtatttttttgaagctattgagttgtttaca
ttttgaatttaagaaacttccctaaagtatggaattctttaccccagtat
agattaccctactgctttagattctttttaacttcctgagtatcaggaag
atttcctccaagatgaattgcttcagataaaactgctacacaaaagagta
ttgaaggcatttttccccctcacagtagtctactttgtgtctttaaagac
ttgtccatctcaactaccacttgatttttttactgtgttacaactaatgt
taatgctctttcaggagaagtgttttatcgtttagttcttgtggacatta
atgtggtggcttgaatgagaatggttttgcatggctcctatattgaatat
ataattccagt
gaattctgtacctgcgtgctttcatgtgggcatttccgggggctacgttt
ggttggtagagaaatttggagggctgtgcctaggtctctgtttagccagc
ttcctgcaggagaggacacaggaatgaattgcttagcctcgtgagtgctc
ttgcccgggtgcctagactgcacacccgtgtgtatacagggggagaggtc
taaccacaaagacgcttgtgtgtctgtagtaacacacatagtgtgccatt
gtgcaaggtttccagttcgttcagctgtgtttgggagtgggcagatgtag
gtgctcaagggtatctgcagagatttaccatgcaaccctgcgtatgtgag
cagaagcatgatgaagagatgtgtgtgcccgcaggcattcctctgggctc
caatggagatgcagggtgtgtgggagatgcacttctatggtacataggct
gcctagtgctggttagcaatggggctcctctcatgcttggggttgggtgt
gtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_62385777_62386451
seq2: B6Ng01-006L05.b_279_952 (reverse)

seq1  ACTGGAATTATATATTCAAATATAGGAGCC-TGCAAAACCATTCTCATTC  49
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  ACTGGAATTATATATTC-AATATAGGAGCCATGCAAAACCATTCTCATTC  49

seq1  AAGCCACCACATTAATGTCCACAAGAACTAAACGATAAAACACTTCTCCT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACCACATTAATGTCCACAAGAACTAAACGATAAAACACTTCTCCT  99

seq1  GAAAAGAGCATTAACATTAGTTGTAACACAGTAAAAAAATCAAGTGGTAG  149
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-AAAGAGCATTAACATTAGTTGTAACACAGTAAAAAAATCAAGTGGTAG  148

seq1  TTGAGATGGACAAGTCTTTAAAGACACAAAGTAGACTACTGTGAGGGGGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATGGACAAGTCTTTAAAGACACAAAGTAGACTACTGTGAGGGGGA  198

seq1  AAAATGCCTTCAATACTCTTTTGTGTAGCAGTTTTATCTGAAGCAATTCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCCTTCAATACTCTTTTGTGTAGCAGTTTTATCTGAAGCAATTCA  248

seq1  TCTTGGAGGAAATCTTCCTGATACTCAGGAAGTTAAAAAGAATCTAAAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAGGAAATCTTCCTGATACTCAGGAAGTTAAAAAGAATCTAAAGC  298

seq1  AGTAGGGTAATCTATACTGGGGTAAAGAATTCCATACTTTAGGGAAGTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGGTAATCTATACTGGGGTAAAGAATTCCATACTTTAGGGAAGTTT  348

seq1  CTTAAATTCAAAATGTAAACAACTCAATAGCTTCAAAAAAATACCTGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATTCAAAATGTAAACAACTCAATAGCTTCAAAAAAATACCTGAAA  398

seq1  CTAACCATATTCCTTCTTCCCCAAGTATAAAAGCAGTAAGGACTACCAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCATATTCCTTCTTCCCCAAGTATAAAAGCAGTAAGGACTACCAAG  448

seq1  AGCCTCTTTCAGACAAGCTGAGCTCATACAAACTGGGCTCCTTGGGAAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTTTCAGACAAGCTGAGCTCATACAAACTGGGCTCCTTGGGAAGG  498

seq1  GCACTCTCTAGTCTCCTAAACTGACTGCTGGTTGTGAAGAGTATTCCATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCTCTAGTCTCCTAAACTGACTGCTGGTTGTGAAGAGTATTCCATG  548

seq1  TTTCCAATTTTTGATAGCTGTTACCTATGATATGCTTGACTATTAGTGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATTTTTGATAGCTGTTACCTATGATATGCTTGACTATTAGTGAT  598

seq1  ACAGCTCTTTTTTTTCAGTTATTTCTGCTTCTATAAGTAACACCTCACAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCTTTTTTTTCAGTTATTTCTGCTTCTATAAGTAACACCTCACAG  648

seq1  ATATTCATGAAAGCAACACCAAGAAA  675
      ||||||||||||||||||||||||||
seq2  ATATTCATGAAAGCAACACCAAGAAA  674

seq1: chr4_133803703_133804206
seq2: B6Ng01-006L05.g_66_569

seq1  GAATTCTGTACCTGCGTGCTTTCATGTGGGCATTTCCGGGGGCTACGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTACCTGCGTGCTTTCATGTGGGCATTTCCGGGGGCTACGTTT  50

seq1  GGTTGGTAGAGAAATTTGGAGGGCTGTGCCTAGGTCTCTGTTTAGCCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTAGAGAAATTTGGAGGGCTGTGCCTAGGTCTCTGTTTAGCCAGC  100

seq1  TTCCTGCAGGAGAGGACACAGGAATGAATTGCTTAGCCTCGTGAGTGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCAGGAGAGGACACAGGAATGAATTGCTTAGCCTCGTGAGTGCTC  150

seq1  TTGCCCGGGTGCCTAGACTGCACACCCGTGTGTATACAGGGGGAGAGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCGGGTGCCTAGACTGCACACCCGTGTGTATACAGGGGGAGAGGTC  200

seq1  TAGCCACAAAGACGCTTGTGTGTCTGTAGTAGCACACATAGTGTGCCATT  250
      || |||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TAACCACAAAGACGCTTGTGTGTCTGTAGTAACACACATAGTGTGCCATT  250

seq1  GTGCAAGGTTTCCAGTTCGTTCAGCTGTGTTTGGGAGTGGGCAGATGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAGGTTTCCAGTTCGTTCAGCTGTGTTTGGGAGTGGGCAGATGTAG  300

seq1  GTGCTCAAGGGTATCTGCAGAGATTTACCATGCAGCCCTGCGTATGTGAG  350
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTGCTCAAGGGTATCTGCAGAGATTTACCATGCAACCCTGCGTATGTGAG  350

seq1  CAGAAGCATGATGAAGAGATGTGTGTGCCCGCAGGCATTCCTCTGGGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCATGATGAAGAGATGTGTGTGCCCGCAGGCATTCCTCTGGGCTC  400

seq1  CAATGGAGATGCAGGGTGTGTGGGAGATGCACTTCTATGGTACATAGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAGATGCAGGGTGTGTGGGAGATGCACTTCTATGGTACATAGGCT  450

seq1  GCCTAGTGCTGGTTAGCAATGGGGCTCCTCTCATGCTTGGGGTTGGGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCCTAGTGCTGGTTAGCAATGGGGCTCCTCTCATGCTTGGGGTTGGGTGT  500

seq1  GTCT  504
      ||||
seq2  GTCT  504