BAC Information

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BAC

Clone NameB6Ng01-007B16
Chromosome12 (Build37)
Map Location 63,355,751 - 63,356,811
singlet/doubletsinglet
Overlap geneLOC622746
Upstream geneLOC100040300, LOC665677, Nanog-ps2, Lrfn5, LOC665699, LOC665707, LOC100040403, LOC665713
Downstream geneLOC100040438, 1700047L15Rik, Tspyl-ps, EG665741, EG382606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007B16.bB6Ng01-007B16.g
ACCDH843776DH843777
length1,2031,050
definitionDH843776|Mus musculus domesticus DNA, BAC clone: B6Ng01-007B16, 5' end.DH843777|Mus musculus domesticus DNA, BAC clone: B6Ng01-007B16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaattaattaattcctatcccctgtactattgtcaaatctaagt
gaatcatggaactccacataaaaccagagacagtgaaacttgcagaggag
aaagtgggggaaagcctcaaagatatgggcacagggaaaaattcctgaat
agaacagcaatggcttgtgctgtaagatcaaaaattgagaaatgggacct
cataaaattgcaaagcttctgtaaggcaaaagacactgtcaataagacaa
aaaggccatcaagatattgggaaaggatctttacctatcctaaatcacat
aagggactaatatccaatatatataaagaactcatgaaggttgattccag
aaaaacaaataacccctttaaaaaatgggactcggagctaaacaaagaat
tctcacctgaggaatgacaaatggctaagaagcacctgaaaaaatgttca
gcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagtttcca
cctcacaccagtcagaatggctaagataaaaaattcaggtgacagcagat
gctggcgaggatgtggagaaagaggaacactcctccattgacggtactga
ttgcaagcttgtacaactactttgtaaatcaatctggcggttcctcagaa
aattggatatagtactaccggaggatccagcaatacctctcctgcgcata
tacccagaagatgttccaactggtaagaaggacacatgctccactatgtt
catagcagccttatttataatagccagaagctgggaagaacccagatgtc
cctcaagagtggaatggatacagaaaatgtggtacatctacacattggag
tactactcagctattaaaatgaatgaatttatgaaattcctgggcaaatg
gatggacctggagggcatcatcctgggtgaggtaacccaatcacaaaaaa
ctcacatgatatgtactcactgataagtagatattagcccagaaacttat
tataccgacgtacaagaatacaattttcaaaacacatgaactcagagatg
agaacaaagtgtggaccttggccctcctggaattggaacaaaaaccatga
gatacagaacagtggactgagataaagatgacatctggactgccattctg
gatctcatagcctcaagctgaactgcatactcagatttgcgtagggaccg
ata
gaattcatcccataatcagccaccaaacccagacactattgcacagtgct
agaaagattttgctgaagggaccctgttatagctgtctcatatgaggcta
tgccagtgcctggcaaatgacagaagtggacgttcacagtcatctataag
atggaacatagggcccccaatggagaagctagagaaagtacccaagaacc
gaaagggtttgaaaccctataggtggaacaacaagtatctctagcagcat
atgtagcagaagatggcctagttggccatcactgggaagagaggcccctt
ggtattgcaaactttatatgccccaatacaggggaatgccagggccaaaa
agcgggagtggctgggtaggggagcaaggcagagggagggtataggtgac
tttcgggataatatttgaaatgtatataaagaaaatatctaataaaaaat
aaataaatgaaaaaaaaagaaaatgaaaatctatctggtcaccatgaatt
atatggttaaacccatctgttctctcattctaaaactataccttttttca
gaaatttatttctgatattcaagtcttcaaaactttacttcacatcttcc
agaagacaagtctttctgagagtttaagtctttcatatttgatctttaat
tagtcgttacttttgttcttttgtttcaaaaacaatatttagaacctaca
cctgatttgacttgacttatttcagtactatgtacaattactattctttt
cattcacatatgaaacttctcaccctctgacatatattttctgaatatag
ttttctgctgtgaagtcctcactgagactcctatcagcctgagttgtcac
ataatggaaccctatcaaccttcaactatttatatcttagttagagtgac
aatttgaataagttactataagatgagatgcgtttattagttacaagaca
cgttacccaccaatgctatacttcttctcaatgtaaatacatttgtgtac
aaaagaatttggagaaaacattatttccataaattatgataatttcgaaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_63355751_63356811
seq2: B6Ng01-007B16.g_62_1111

seq1  GAATTCATCCCATAATCAGCCACCAAACCCAGACACTATTGCACAGTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCCATAATCAGCCACCAAACCCAGACACTATTGCACAGTGCT  50

seq1  AGAAAGATTTTGCTGAAGGGACCCTGTTATAGCTGTCTCATATGAGGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATTTTGCTGAAGGGACCCTGTTATAGCTGTCTCATATGAGGCTA  100

seq1  TGCCAGTGCCTGGCAAATGACAGAAGTGGACGTTCACAGTCATCTATAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTGCCTGGCAAATGACAGAAGTGGACGTTCACAGTCATCTATAAG  150

seq1  ATGGAACATAGGGCCCCCAATGGAGAAGCTAGAGAAAGTACCCAAGAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACATAGGGCCCCCAATGGAGAAGCTAGAGAAAGTACCCAAGAACC  200

seq1  GAAAGGGTTTGAAACCCTATAGGTGGAACAACAAGTATCTCTAGCAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGTTTGAAACCCTATAGGTGGAACAACAAGTATCTCTAGCAGCAT  250

seq1  ATGTAGCAGAAGATGGCCTAGTTGGCCATCACTGGGAAGAGAGGCCCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCAGAAGATGGCCTAGTTGGCCATCACTGGGAAGAGAGGCCCCTT  300

seq1  GGTATTGCAAACTTTATATGCCCCAATACAGGGGAATGCCAGGGCCAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTGCAAACTTTATATGCCCCAATACAGGGGAATGCCAGGGCCAAAA  350

seq1  AGCGGGAGTGGCTGGGTAGGGGAGCAAGGCAGAGGGAGGGTATAGGTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGGAGTGGCTGGGTAGGGGAGCAAGGCAGAGGGAGGGTATAGGTGAC  400

seq1  TTTCGGGATAATATTTGAAATGTATATAAAGAAAATATCTAATAAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGGGATAATATTTGAAATGTATATAAAGAAAATATCTAATAAAAAAT  450

seq1  AAATAAATGAAAAAAAAAGAAAATGAAAATCTATCTGGTCACCATGAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATGAAAAAAAAAGAAAATGAAAATCTATCTGGTCACCATGAATT  500

seq1  ATATGGTTAAACCCATCTGTTCTCTCATTCTAAAACTATACCTTTTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTTAAACCCATCTGTTCTCTCATTCTAAAACTATACCTTTTTTCA  550

seq1  GAAATTTATTTCTGATATTCAAGTCTTCAAAACTTTACTTCACATCTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTATTTCTGATATTCAAGTCTTCAAAACTTTACTTCACATCTTCC  600

seq1  AGAAGACAAGTCTTTCTGAGAGTTTAAGTCTTTCATATTTGATCTTTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACAAGTCTTTCTGAGAGTTTAAGTCTTTCATATTTGATCTTTAAT  650

seq1  TAGTCGTTACTTTTGTTCTTTTGTTTCAAAAACAATATTTAGAACCTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCGTTACTTTTGTTCTTTTGTTTCAAAAACAATATTTAGAACCTACA  700

seq1  CCTGATTTGACTTGACTTATTTCAGTACTATGTACAATTACTATTCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTTGACTTGACTTATTTCAGTACTATGTACAATTACTATTCTTTT  750

seq1  CATTCACATATGAAACTTCTCACCCTCTGACATATATTTTCTGAATATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACATATGAAACTTCTCACCCTCTGACATATATTTTCTGAATATAG  800

seq1  TTTTCTGCTGTGAAGTCCTCACTGAGACTCCTATCAGCCTGAGTTGTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGCTGTGAAGTCCTCACTGAGACTCCTATCAGCCTGAGTTGTCAC  850

seq1  ATAATGGAACCCTATTCAAACCTTCAACTATTTATATCTTAGTTAGAAGT  900
      |||||||||||||||   |||||||||||||||||||||||||||| |||
seq2  ATAATGGAACCCTAT--CAACCTTCAACTATTTATATCTTAGTTAG-AGT  897

seq1  GACAATTTGAATAAGGTTACTATAAGATGAAATGCGTTTAATAGTTACAA  950
      |||||||||||||| ||||||||||||||| ||||||||| |||||||||
seq2  GACAATTTGAATAA-GTTACTATAAGATGAGATGCGTTTATTAGTTACAA  946

seq1  GACACGTTACCACACCAATGCTTATACTTCTTCTCAATGTAAATACATTT  1000
      ||||||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  GACACGTTACC-CACCAATGC-TATACTTCTTCTCAATGTAAATACATTT  994

seq1  GTGTACAAAAGAATTTGGGAAAAAACATTATTTCCAATAAAATTATGAAT  1050
      |||||||||||||||| ||| |||||||||||||||   |||||||| ||
seq2  GTGTACAAAAGAATTT-GGAGAAAACATTATTTCCA--TAAATTATG-AT  1040

seq1  AATTTCAGAAA  1061
      |||||| ||||
seq2  AATTTC-GAAA  1050