BAC Information

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BAC

Clone NameB6Ng01-007C21
Chromosome12 (Build37)
Map Location 47,527,121 - 47,612,121
singlet/doubletdoublet
Overlap geneLOC664952
Upstream genenone
Downstream geneNova1, LOC100039190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007C21.bB6Ng01-007C21.g
ACCDH843827DH843828
length1,103776
definitionDH843827|Mus musculus domesticus DNA, BAC clone: B6Ng01-007C21, 5' end.DH843828|Mus musculus domesticus DNA, BAC clone: B6Ng01-007C21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,611,015 - 47,612,121)(47,527,121 - 47,527,894)
sequence
gaattctctttggtacagttatcacctgatatttgtttttctaaaagtca
tgcaaaagtgcaatcccttcagtgatgattttaaaagtgaggatttggtt
gataattaagacatgaaagtaaatccctcaggagtaggatttgttccttc
agagaacaacttcactctctatcatgtgtagatacaccacaaagccaact
gtctgtaaggcagagaaaaacctgagctgaatttcagatttcttggcacc
tccaactctgtggaacatcgatttctggtatggtttagagtcataaaatc
agaaagaatacggaattttcattcaaacgatcaccaaataactgagattt
agctttattatgcttaaaaaaaagggagaataattttacagagtcaaaaa
ttggaacatagtcagaagttgtggaatcattttagaattttctgtgtgta
ctatcgctttatctaaagttgtaagataatctttttgatacgcttgcttc
ctggcatattaaggccatcttgtaaagataaggtagatgtctgacaattc
agtcgttaccagaggttcacattctccaggcagtcatggaaaattacagc
atgacccatgttcaacaattgtgggtttctcctgattttgagactagagt
ttcagtaaataactccacaggtcttcagtgactatagttccattgactac
tggcatactgagcaatggaagtcaatcaggtatccaatggacacgatgtt
caagaacagcgtaaaactcctttcctggaacaaatctgtaatgtttttat
atttcatcctataacttcaaattcattgtgttgaattattctaacacatc
aaaaaaatacaattatgtgaaagtaccagttgaattatcctgttagaggt
gccagagaaactctgtcctaaaattggcagaattgtggatacaggtgaaa
cagtttagtgagcatctcactgaatttcatcagagtgttatcatcatatc
atgcagtgaaattcagtttgtggatgctggggctggaaattgttaatgct
cattgacttttcttacacatggccttagtgcgtactaggcagagtttaaa
aga
gaattcagagggcaggctgaagccagtctgaatcagagtgagtgaggaga
gtatggaggggctggaagagagaaaactccctgagagttttagatgtggc
actttaaaatgaaggtttttcccatggtagatccttaatggagagatgat
acttgctcgtttatactgatttatttgatggtggatgcaaatgtgtacac
ttgattgagtgtgaaccagggattaaatatcttttgtggaaaggaatgca
caagaagggaagctcattggctgactgttcaggagttatcaagataccgc
aacagcatggaaaactctcagtgtttagctacaggacccagtgctcattg
gggtataatggttacttatcccatagcagttacaatcaggtcggaatggc
tcctctcctgaaatcctcaattctgagattcctaggttttaagcacattc
acatttatcattcttatgacctgatgtaacaaggtcccatgtgccctaca
ggaaggttatagaaaccactgtaggtaatagattctgtttaaggacccaa
tgactcatctttctttatagccatagtgtatagcacaagtttatgctatg
gtttttgactgatttgggccaaccaaataagacagatgcaacccccatca
cagttctccagatgatatttctgcttgcctattatcaaagttcttctcag
agcaaatatgcttgtgctcattttttcagcaaaaaaaaagagatatattg
aatagatttgatgatagataatctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_47611015_47612121
seq2: B6Ng01-007C21.b_41_1143 (reverse)

seq1  TCTTTTAGACTTCTG-CTAGTACCGCACTTAAGCCATGTGTAAG-AAAGT  48
      ||||||| || |||| |||||| |||||| | |||||||||||| |||||
seq2  TCTTTTAAAC-TCTGCCTAGTA-CGCACTAAGGCCATGTGTAAGAAAAGT  48

seq1  CAATGAGCATTTTACAGATTTCCAGCCCCAGCATCCACAAACTGAATTTC  98
      ||||||||| || ||| |||||||||||||||||||||||||||||||||
seq2  CAATGAGCA-TTAACA-ATTTCCAGCCCCAGCATCCACAAACTGAATTTC  96

seq1  ACTGCATGGATATGATGATAACACTCTTGATGAAATTCAGTGAGATGCTC  148
      ||||||| |||||||||||||||||| |||||||||||||||||||||||
seq2  ACTGCAT-GATATGATGATAACACTC-TGATGAAATTCAGTGAGATGCTC  144

seq1  ACTAAACTGTTTCA-CTGTATCCACAATTCTGCCAATTTTAGGACAGAGT  197
      |||||||||||||| |||||||||||||||||||||||||||||||||| 
seq2  ACTAAACTGTTTCACCTGTATCCACAATTCTGCCAATTTTAGGACAGAG-  193

seq1  TTTCTCTGGCACCTCTAACAGGATAATTCAACTGGTACTTTCACATAATT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGGCACCTCTAACAGGATAATTCAACTGGTACTTTCACATAATT  243

seq1  GTATTTTTTTGATGTGTTAGAATAATTCAACACAATGAATTTGAAGTTAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTTTGATGTGTTAGAATAATTCAACACAATGAATTTGAAGTTAT  293

seq1  AGGATGAAATATAAAAACATTACAGATTTGTTCCAGGAAAGGAGTTTTAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGAAATATAAAAACATTACAGATTTGTTCCAGGAAAGGAGTTTTAC  343

seq1  GCTGTTCTTGAACATCGTGTCCATTGGATACCTGATTGACTTCCATTGCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCTTGAACATCGTGTCCATTGGATACCTGATTGACTTCCATTGCT  393

seq1  CAGTATGCCAGTAGTCAATGGAACTATAGTCACTGAAGACCTGTGGAGTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGCCAGTAGTCAATGGAACTATAGTCACTGAAGACCTGTGGAGTT  443

seq1  ATTTACTGAAACTCTAGTCTCAAAATCAGGAGAAACCCACAATTGTTGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTGAAACTCTAGTCTCAAAATCAGGAGAAACCCACAATTGTTGAA  493

seq1  CATGGGTCATGCTGTAATTTTCCATGACTGCCTGGAGAATGTGAACCTCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGTCATGCTGTAATTTTCCATGACTGCCTGGAGAATGTGAACCTCT  543

seq1  GGTAACGACTGAATTGTCAGACATCTACCTTATCTTTACAAGATGGCCTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACGACTGAATTGTCAGACATCTACCTTATCTTTACAAGATGGCCTT  593

seq1  AATATGCCAGGAAGCAAGCGTATCAAAAAGATTATCTTACAACTTTAGAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCCAGGAAGCAAGCGTATCAAAAAGATTATCTTACAACTTTAGAT  643

seq1  AAAGCGATAGTACACACAGAAAATTCTAAAATGATTCCACAACTTCTGAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCGATAGTACACACAGAAAATTCTAAAATGATTCCACAACTTCTGAC  693

seq1  TATGTTCCAATTTTTGACTCTGTAAAATTATTCTCCCTTTTTTTTAAGCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCCAATTTTTGACTCTGTAAAATTATTCTCCCTTTTTTTTAAGCA  743

seq1  TAATAAAGCTAAATCTCAGTTATTTGGTGATCGTTTGAATGAAAATTCCG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAGCTAAATCTCAGTTATTTGGTGATCGTTTGAATGAAAATTCCG  793

seq1  TATTCTTTCTGATTTTATGACTCTAAACCATACCAGAAATCGATGTTCCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTCTGATTTTATGACTCTAAACCATACCAGAAATCGATGTTCCA  843

seq1  CAGAGTTGGAGGTGCCAAGAAATCTGAAATTCAGCTCAGGTTTTTCTCTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTGGAGGTGCCAAGAAATCTGAAATTCAGCTCAGGTTTTTCTCTG  893

seq1  CCTTACAGACAGTTGGCTTTGTGGTGTATCTACACATGATAGAGAGTGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACAGACAGTTGGCTTTGTGGTGTATCTACACATGATAGAGAGTGAA  943

seq1  GTTGTTCTCTGAAGGAACAAATCCTACTCCTGAGGGATTTACTTTCATGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCTCTGAAGGAACAAATCCTACTCCTGAGGGATTTACTTTCATGT  993

seq1  CTTAATTATCAACCAAATCCTCACTTTTAAAATCATCACTGAAGGGATTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTATCAACCAAATCCTCACTTTTAAAATCATCACTGAAGGGATTG  1043

seq1  CACTTTTGCATGACTTTTAGAAAAACAAATATCAGGTGATAACTGTACCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTGCATGACTTTTAGAAAAACAAATATCAGGTGATAACTGTACCA  1093

seq1  AAGAGAATTC  1107
      ||||||||||
seq2  AAGAGAATTC  1103

seq1: chr12_47527121_47527894
seq2: B6Ng01-007C21.g_65_840

seq1  GAATTCAGAGGGCAGGCTGAAGCCAGTCTGAATCAGAGTGAGTGAGGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGGCAGGCTGAAGCCAGTCTGAATCAGAGTGAGTGAGGAGA  50

seq1  GTATGGAGGGGCTGGAAGAGAGAAAACTCCCTGAGAGTTTTAGATGTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGAGGGGCTGGAAGAGAGAAAACTCCCTGAGAGTTTTAGATGTGGC  100

seq1  ACTTTAAAATGAAGGTTTTTCCCATGGTAGATCCTTAATGGAGAGATGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAAATGAAGGTTTTTCCCATGGTAGATCCTTAATGGAGAGATGAT  150

seq1  ACTTGCTCGTTTATACTGATTTATTTGATGGTGGATGCAAATGTGTACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTCGTTTATACTGATTTATTTGATGGTGGATGCAAATGTGTACAC  200

seq1  TTGATTGAGTGTGAACCAGGGATTAAATATCTTTTGTGGAAAGGAATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGAGTGTGAACCAGGGATTAAATATCTTTTGTGGAAAGGAATGCA  250

seq1  CAAGAAGGGAAGCTCATTGGCTGACTGTTCAGGAGTTATCAAGATACCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGGGAAGCTCATTGGCTGACTGTTCAGGAGTTATCAAGATACCGC  300

seq1  AACAGCATGGAAAACTCTCAGTGTTTAGCTACAGGACCCAGTGCTCATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCATGGAAAACTCTCAGTGTTTAGCTACAGGACCCAGTGCTCATTG  350

seq1  GGGTATAATGGTTACTTATCCCATAGCAGTTACAATCAGGTCGGAATGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATAATGGTTACTTATCCCATAGCAGTTACAATCAGGTCGGAATGGC  400

seq1  TCCTCTCCTGAAATCCTCAATTCTGAGATTCCTAGGTTTTAAGCACATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCCTGAAATCCTCAATTCTGAGATTCCTAGGTTTTAAGCACATTC  450

seq1  ACATTTATCATTCTTATGACCTGATGTAACAAGGTCCCATGTGCCCTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTATCATTCTTATGACCTGATGTAACAAGGTCCCATGTGCCCTACA  500

seq1  GGAAGGTTATAGAAACCACTGTAGGTAATAGATTCTGTTTAAGGACCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTTATAGAAACCACTGTAGGTAATAGATTCTGTTTAAGGACCCAA  550

seq1  TGACTCATCTTTCTTTATAGCCATAGTGTATAGCACAAGTTTATGCTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCATCTTTCTTTATAGCCATAGTGTATAGCACAAGTTTATGCTATG  600

seq1  G-TTTTGACTGATTTGGGCCAACCAAATAAGACAGATGCAACCCCCATCA  649
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGACTGATTTGGGCCAACCAAATAAGACAGATGCAACCCCCATCA  650

seq1  CAGTTCTCCAGATGATATTTCTGCTTGCCTATTATCAAAGTTCTTCTCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTCCAGATGATATTTCTGCTTGCCTATTATCAAAGTTCTTCTCAG  700

seq1  AGCAAATATGCTTGTGCTCA-TTTTTCAGCAAAAAAAAAGAGATATATTG  748
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGCAAATATGCTTGTGCTCATTTTTTCAGCAAAAAAAAAGAGATATATTG  750

seq1  AATAGATTTGATGATAGATAAGCTAT  774
      ||||||||||||||||||||| ||||
seq2  AATAGATTTGATGATAGATAATCTAT  776