BAC Information

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BAC

Clone NameB6Ng01-007D09
Chromosome12 (Build37)
Map Location 12,180,514 - 12,181,621
singlet/doubletsinglet
Overlap genenone
Upstream geneMsgn1, 5830483C08Rik, Smc6, Vsnl1, EG209550, LOC217390, LOC628327, LOC627110, LOC100043209
Downstream geneD12Ertd553e, LOC100043215, Mycn, EG668473, LOC628449
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007D09.bB6Ng01-007D09.g
ACCDH843851DH843852
length1,0941,203
definitionDH843851|Mus musculus domesticus DNA, BAC clone: B6Ng01-007D09, 5' end.DH843852|Mus musculus domesticus DNA, BAC clone: B6Ng01-007D09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctgtagatcaggttagcttcaaactcacagcgatccacctgcc
tctgccttccaagtgctggccttaaaggtgtgcagcaccacagccaggct
gacatactgttctcgtgcagctgttcttgggcatgggttgtctatttaca
aaaggcaccagaccagaggttcttcctcccttaatcctcagtgaggatgg
tctttgtttcattggcagccttcttcaaacacacgtggctcacatgggaa
ggacgaagctggacattctggtctcattctgtacttgccccatcttcctt
caatgttctccattcacttacaatgattcactaattgtatcattgtaata
cttgatgttatatttattaacttattcttttctccatcgtatctagttta
cgtcgccctactgctcttggaaagagggcctgcgctggagtgtggccaac
ctaccaggcgccacatcattaaagaaaatcgagtctccctctttcctcag
ctaccaatatctcctctgccaggggtgggattccatgcagatatcctgtc
ctccatactgagattccatttagactgagcttaggcaggtctcttgcatg
ctgtcacaattgctgtgagtttgagatgtctactgtaccctgctgtgtct
gggaaacacattcttcgatgtcatcctccatccttcttaccggcttctat
gaataactctatgatcttggaatacgcctttaactaacctttgtttggta
cccacggcatgtcaaatttgaactaggtatgttatgcatatattagcaaa
atttcaaaatgagagttattattgtaagtgaattcatagggaagtgtaga
gagagtttaactaaagcccttaggggtccataccttactgttattctttg
tttcttaaatattcctaaaggaaatttatgggttaaaggcctggtcctca
gctgagtgctcatatacgccacaaaactttagatgtgtagtcattagctc
actgaagcttcccctcaaggatcatagactgatgtctttttcttctcgtc
ttttttttatctaacttccatcctgagagagacgtcttcctcta
gaattccacataaaaccagagacactgaaacttttagaaagtgggggaaa
gcctctaagatatgggcacagtggaaaaattcctgaatagaacagcaatg
gcttgtgctttaagattgagaactgacaaatgggacctcataaaacttca
aagtttctgtaaggcaaaagacaccatcaataagacaaaagggccatcaa
cagattgggaaaggatctttatctatcctaaatcagataggggactaata
tccaatatttataaagaactcaagaaggtggactccagaaaatcaaataa
ccccattaaaaaatggggctgagctaaacaaagaattctcacctgaggaa
taccaaatggctgagaagcacgtgaaaaaatgttcagcatccttaatcat
cagggaaatgcaaatcaaaacaaccctgagattccatctcaaaccagtca
gaatggctaaggtcaaaaattcaggtgacagcagatgctggcgaggatgt
ggagaaagaggaacactcctccattgttgatgggattgcaagcttgtaca
accactctggaaatcagtctggcggttcctcagaaaattggacatagtac
cacttgaggatcccgcaatacctctcctgggcatatatccagaaaaagtt
ccaactggtaagaaagacacatgctccactatgtacctagcagctttatt
cataatagccagaagctggaaagaacccagatgtaccataacagaaaaat
agatacaaaaatgtggtacatttacacaatggagtactactcagctatta
aaaggatgatttatgaattcctaggcaaatggttgggacctggagggcat
catcctgagtgaggtaacccaatcacaaaaaattcaatgatatgtactta
ctgatagtggatatagcccagaaacttagaatacccagattatagataca
atctgtaaaacacatgaactcagaagaacaaagacaaagtgttgacactt
tgctccttctttgatggacaaaacacccatggagaatttacagaaactag
ttggagctggaacaaagagtgacaatctaaagtagactcattgtaatgta
ctatcagggatcatacgattcagctccaagcgtaacttggatagatgaga
tgctgaaagaacctgtatttacgtctcgtggaaaactatgacagggctca
ttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_12180514_12181621
seq2: B6Ng01-007D09.b_43_1136 (reverse)

seq1  TAGAGG-AGACTGCTTCTCTCAGGGATGGGAAGTTTAAGATAAAAAAAAG  49
      |||||| |||| |  ||||||| |||| |||||||  |||||||||||||
seq2  TAGAGGAAGAC-GTCTCTCTCA-GGAT-GGAAGTT--AGATAAAAAAAAG  45

seq1  GAACGAGAAAGGAAAAGACATCAGTCTTATGATTCCCTTTGAGGGGAAGC  99
        ||||| ||| |||||||||||||| ||||||   | ||||||||||||
seq2  --ACGAG-AAGAAAAAGACATCAGTC-TATGAT---CCTTGAGGGGAAGC  88

seq1  TTCCAGTGAGCTAATGACTACACATCTAAAGTTTTTGTGGCCGTATATGA  149
      || |||||||||||||||||||||||||||| |||||||| |||||||||
seq2  TT-CAGTGAGCTAATGACTACACATCTAAAG-TTTTGTGG-CGTATATGA  135

seq1  GCACTCAGCTGAGGACCAGGCCTTTAACCCATAAATTTTCCTTTAGGAAT  199
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCACTCAGCTGAGGACCAGGCCTTTAACCCATAAA-TTTCCTTTAGGAAT  184

seq1  ATTTAAGAAACAAAGAATAACAGTAAGGTATGGACCCCTTAGGGCTTTAG  249
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATTTAAGAAACAAAGAATAACAGTAAGGTATGGACCCCTAAGGGCTTTAG  234

seq1  TTAAACTCTCTCTACACTT-CCTATGAATTCACTTACAATAATAACTCTC  298
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTAAACTCTCTCTACACTTCCCTATGAATTCACTTACAATAATAACTCTC  284

seq1  ATTTTGAAATTTTGCTAATATATGCATAACATACCTAGTTCAAATTTGAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAAATTTTGCTAATATATGCATAACATACCTAGTTCAAATTTGAC  334

seq1  ATGCCGTGGGTACCAAACAAAGGTTAGTTAAAGGCGTATTCCAAGATCAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCGTGGGTACCAAACAAAGGTTAGTTAAAGGCGTATTCCAAGATCAT  384

seq1  AGAGTTATTCATAGAAGCCGGTAAGAAGGATGGAGGATGACATCGAAGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTATTCATAGAAGCCGGTAAGAAGGATGGAGGATGACATCGAAGAA  434

seq1  TGTGTTTCCCAGACACAGCAGGGTACAGTAGACATCTCAAACTCACAGCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTCCCAGACACAGCAGGGTACAGTAGACATCTCAAACTCACAGCA  484

seq1  ATTGTGACAGCATGCAAGAGACCTGCCTAAGCTCAGTCTAAATGGAATCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGACAGCATGCAAGAGACCTGCCTAAGCTCAGTCTAAATGGAATCT  534

seq1  CAGTATGGAGGACAGGATATCTGCATGGAATCCCACCCCTGGCAGAGGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGGAGGACAGGATATCTGCATGGAATCCCACCCCTGGCAGAGGAG  584

seq1  ATATTGGTAGCTGAGGAAAGAGGGAGACTCGATTTTCTTTAATGATGTGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGTAGCTGAGGAAAGAGGGAGACTCGATTTTCTTTAATGATGTGG  634

seq1  CGCCTGGTAGGTTGGCCACACTCCAGCGCAGGCCCTCTTTCCAAGAGCAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGGTAGGTTGGCCACACTCCAGCGCAGGCCCTCTTTCCAAGAGCAG  684

seq1  TAGGGCGACGTAAACTAGATACGATGGAGAAAAGAATAAGTTAATAAATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCGACGTAAACTAGATACGATGGAGAAAAGAATAAGTTAATAAATA  734

seq1  TAACATCAAGTATTACAATGATACAATTAGTGAATCATTGTAAGTGAATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCAAGTATTACAATGATACAATTAGTGAATCATTGTAAGTGAATG  784

seq1  GAGAACATTGAAGGAAGATGGGGCAAGTACAGAATGAGACCAGAATGTCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACATTGAAGGAAGATGGGGCAAGTACAGAATGAGACCAGAATGTCC  834

seq1  AGCTTCGTCCTTCCCATGTGAGCCACGTGTGTTTGAAGAAGGCTGCCAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCGTCCTTCCCATGTGAGCCACGTGTGTTTGAAGAAGGCTGCCAAT  884

seq1  GAAACAAAGACCATCCTCACTGAGGATTAAGGGAGGAAGAACCTCTGGTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAAGACCATCCTCACTGAGGATTAAGGGAGGAAGAACCTCTGGTC  934

seq1  TGGTGCCTTTTGTAAATAGACAACCCATGCCCAAGAACAGCTGCACGAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCTTTTGTAAATAGACAACCCATGCCCAAGAACAGCTGCACGAGA  984

seq1  ACAGTATGTCAGCCTGGCTGTGGTGCTGCACACCTTTAAGGCCAGCACTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATGTCAGCCTGGCTGTGGTGCTGCACACCTTTAAGGCCAGCACTT  1034

seq1  GGAAGGCAGAGGCAGGTGGATCGCTGTGAGTTTGAAGCTAACCTGATCTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCAGAGGCAGGTGGATCGCTGTGAGTTTGAAGCTAACCTGATCTA  1084

seq1  CAGAGAATTC  1108
      ||||||||||
seq2  CAGAGAATTC  1094