BAC Information

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BAC

Clone NameB6Ng01-007J01
Chromosome12 (Build37)15 (Build37)
Map Location 121,000,081 - 121,001,18113,331,002 - 13,331,415
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC620665, Sp8, Abcb5, Itgb8, EG627557, LOC100043011, 4732474O15Rik, LOC668632
Downstream geneLOC668633, Gm528, LOC100043017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007J01.bB6Ng01-007J01.g
ACCDH844095DH844096
length1,096816
definitionDH844095|Mus musculus domesticus DNA, BAC clone: B6Ng01-007J01, 5' end.DH844096|Mus musculus domesticus DNA, BAC clone: B6Ng01-007J01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(121,000,081 - 121,001,181)(13,331,002 - 13,331,415)
sequence
gaattccaaatcaagtgtcacgcttaactaatcataaagtgctaatactc
tttatttggctgtttcaaaagtgctataggaatataagatgctgacaaaa
atataagattagatattctgtgttatgtctctggaacatttcctgaatat
ctaaaattattctatagtatattttgataaatggtaatgcttgagtagta
gtagagcataagaatcatctttttacacagttagatatattgtatgtgta
catacagtgaaatgttaaggttttgcatatttcatttaatggcttttgtt
cctatgtatgaaaatatcaaacataatcaagaaaaccacatgtcccacca
cacagcatccaactcaatgattatttttgtctacacaaggaattttcata
agtgtatcacagaatatgggcatagctttccataaaactttcacttagca
aagaatttgtgaattttattatacctatcagttgcttaattttaatgttg
aatatatatctgttttatggatgtgataatctttatatttcttctttcaa
tgagtaattctcacttttaataattacatgaatgattctgatacaggtca
tatacagatatcatcttgagaaacattattgcacaaagtagatacttatt
ctttcatctcttagttaataaaccattccaagcataagacaatagaggaa
tatttagtaactttaaaaaacctacaatataatgtagtgaacctgtatta
ataactagataagataaataattaacaacagctatgcaatgtaaaggcat
ggtatctgacaatccctacaaaaacagctaaaagaatttgaattttaaga
aagttcatttgtctttggttactgggactgtgatgacttgtttattgttc
tttagggactaagaacaaaggggtgagtgcagcagagactttatgaataa
ggcagtaaaacattattactaacaccagtgacaaaataatctgtggaatt
tttgcaattttgcatagacaaatgtcacaaaacttactatctttagaatg
tggtggaaagaacagctcatacactgtagtaagaaagaatgactaa
gaattctttgtttagctctgagtcgcattttttaatggggtaatttgatt
ttctggaatccatcttcttgagttatttatatatattggatattagtacc
ctatctgatttaggataggtaaagatcctttcacaatctgttggtgggct
ttttatcttaatgacggtgtcttttgccttacagaagttttgtaatttta
cgaggtcccatttgtcgattctcgatcttacatcacaagccattgctgtt
ctattcaggaatttttcccctgtgcccatatcttcgaggcttttccctac
tttctcctctataagtttcactgtctctggtttcatgtggagttccttga
tccacttagatttgaccttagtacaaggagataggaatggatcaatttgc
attcttccatttgttgaaaatgctgtcttttttccactggatggttttag
ctcccttgtcaaaggtcaagagaccataggtgtttgggctcatttctggg
tcgttgatttcattgttctacttgtctgtcgctataccagtaccatgcag
tttttaaaaaaaatatatttattaggtattttcctcatttacatttccaa
tgctatcccaaaagtcccccataccctcgccccccccccactcccctacc
cacccactcccattttttggccctggcattcccctgtactgggggcatat
aaagtttgcaagtccaatggatttctgtatatttgaaccattcctgcatc
cctgggatgaaacctacttggaaagatggatgattgtttttatgtgttct
tggattcggttcttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_121000081_121001181
seq2: B6Ng01-007J01.b_48_1143

seq1  GAATTCCAAATCAAGTGTCACGCTTAACTAATCATAAAGTGCTAATACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATCAAGTGTCACGCTTAACTAATCATAAAGTGCTAATACTC  50

seq1  TTTATTTGGCTGTTTCAAAAGTGCTATAGGAATATAAGATGCTGACAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGGCTGTTTCAAAAGTGCTATAGGAATATAAGATGCTGACAAAA  100

seq1  ATATAAGATTAGATATTCTGTGTTATGTCTCTGGAACATTTCCTGAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGATTAGATATTCTGTGTTATGTCTCTGGAACATTTCCTGAATAT  150

seq1  CTAAAATTATTCTATAGTATATTTTGATAAATGGTAATGCTTGAGTAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATTATTCTATAGTATATTTTGATAAATGGTAATGCTTGAGTAGTA  200

seq1  GTAGAGCATAAGAATCATCTTTTTACACAGTTAGATATATTGTATGTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGCATAAGAATCATCTTTTTACACAGTTAGATATATTGTATGTGTA  250

seq1  CATACAGTGAAATGTTAAGGTTTTGCATATTTCATTTAATGGCTTTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGTGAAATGTTAAGGTTTTGCATATTTCATTTAATGGCTTTTGTT  300

seq1  CCTATGTATGAAAATATCAAACATAATCAAGAAAACCACATGTCCCACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGTATGAAAATATCAAACATAATCAAGAAAACCACATGTCCCACCA  350

seq1  CACAGCATCCAACTCAATGATTATTTTTGTCTACACAAGGAATTTTCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCATCCAACTCAATGATTATTTTTGTCTACACAAGGAATTTTCATA  400

seq1  AGTGTATCACAGAATATGGGCATAGCTTTCCATAAAACTTTCACTTAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATCACAGAATATGGGCATAGCTTTCCATAAAACTTTCACTTAGCA  450

seq1  AAGAATTTGTGAATTTTATTATACCTATCAGTTGCTTAATTTTAATGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTGTGAATTTTATTATACCTATCAGTTGCTTAATTTTAATGTTG  500

seq1  AATATATATCTGTTTTATGGATGTGATAATCTTTATATTTCTTCTTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATATCTGTTTTATGGATGTGATAATCTTTATATTTCTTCTTTCAA  550

seq1  TGAGTAATTCTCACTTTTAATAATTACATGAATGATTCTGATACAGGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAATTCTCACTTTTAATAATTACATGAATGATTCTGATACAGGTCA  600

seq1  TATACAGATATCATCTTGAGAAACATTATTGCACAAAGTAGATACTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGATATCATCTTGAGAAACATTATTGCACAAAGTAGATACTTATT  650

seq1  CTTTCATCTCTTAGTTAATAAACCATTCCAAGCATAAGACAATAGAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATCTCTTAGTTAATAAACCATTCCAAGCATAAGACAATAGAGGAA  700

seq1  TATTTAGTAACTTTAAAAAACCTACAATATAATGTAGTGAACCTGTATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGTAACTTTAAAAAACCTACAATATAATGTAGTGAACCTGTATTA  750

seq1  ATAACTAGATAAGATAAATAATTAACAACAGCTATGCAATGTAAAGGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTAGATAAGATAAATAATTAACAACAGCTATGCAATGTAAAGGCAT  800

seq1  GGTATCTGACAATCCCTACAAAAACAGCTAAAAGAATTTGAATTTTAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCTGACAATCCCTACAAAAACAGCTAAAAGAATTTGAATTTTAAGA  850

seq1  AAGTTCATTTGTCTTTGGTTACT-GGACTGTGATGACTTGTTTATTGTTC  899
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAGTTCATTTGTCTTTGGTTACTGGGACTGTGATGACTTGTTTATTGTTC  900

seq1  TTTAGGGACTAAGAAC-AAGGGGTGAGTGCAGCAGAGACTTTATG-ATAA  947
      |||||||||||||||| |||||||||||||||||||||||||||| ||||
seq2  TTTAGGGACTAAGAACAAAGGGGTGAGTGCAGCAGAGACTTTATGAATAA  950

seq1  GGCAGTAAAACATTA-TACTAACACCAGTGACAAAATAATCTGTGGAATT  996
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGCAGTAAAACATTATTACTAACACCAGTGACAAAATAATCTGTGGAATT  1000

seq1  TTTGCAATTTTTGCATTAGACATATGTCACAAAACTAACTATCTTTAGGA  1046
      ||||||| ||||||| |||||| ||||||||||||| |||||||||| ||
seq2  TTTGCAA-TTTTGCA-TAGACAAATGTCACAAAACTTACTATCTTTA-GA  1047

seq1  ATGTGGTGGGAAAGGAAACAGCTTCATACACTGTAAGAAAGAAAAGAATG  1096
      ||||||| ||||||  |||||| ||||||||||| || ||| ||||||||
seq2  ATGTGGT-GGAAAG--AACAGC-TCATACACTGT-AGTAAG-AAAGAATG  1091

seq1  ACTAA  1101
      |||||
seq2  ACTAA  1096

seq1: chr15_13331002_13331415
seq2: B6Ng01-007J01.g_782_882 (reverse)

seq1  TCAAGATCAGGTTAATGATCTAAACAGTCCTATATCGCCTAAAGATATAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  AAACAGTCATTAATAGTCTCCCAACCAAAAAAGCCCAGGACTAGATGGGT  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTAGTGCAGAGTTCTATCAGACCTTCAAAGAATATCTAATCCCAGTTCTT  150
                                                        
seq2  --------------------------------------------------  0

seq1  CACAAACTATTCTACAAAATAGAAACAGAAGGTACTCTACCCAACTCATT  200
                                                        
seq2  --------------------------------------------------  0

seq1  CTATGAAGCCACAATTAGTCTGATACCTAAACCACAAAAAGACCCAACAA  250
                                                        
seq2  --------------------------------------------------  0

seq1  AGATAGAGAACTTCAGACCAATTTCCCTTATGAATATCGATGCAAAAATA  300
                                                        
seq2  --------------------------------------------------  0

seq1  CTCAATAAAGTTTTCGCTTACCGAATCCAAGAACACATCAAAACAATCAT  350
       |||| |            ||||||||||||||||||| |||||||||||
seq2  -TCAAGA------------ACCGAATCCAAGAACACATAAAAACAATCAT  37

seq1  CCATCCTGACCAAGTAGGTTTCATCCCAGGGATGCAGGGATGGTTC-AAT  399
      |||| ||  ||||||||||||||||||||||||||||| ||||||| |||
seq2  CCAT-CTTTCCAAGTAGGTTTCATCCCAGGGATGCAGGAATGGTTCAAAT  86

seq1  ATACGGAAATCCATT  414
      |||| ||||||||||
seq2  ATACAGAAATCCATT  101