BAC Information

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BAC

Clone NameB6Ng01-008J17
Chromosome12 (Build37)
Map Location 53,387,599 - 53,552,571
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039525, 6030408C04Rik, Scfd1, LOC620390, LOC100039578, Coch, Strn3, Ap4s1, Hectd1, EG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627, Nubpl
Downstream geneArhgap5, Akap6, Npas3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008J17.bB6Ng01-008J17.g
ACCDH844809DH844810
length4141,046
definitionDH844809|Mus musculus domesticus DNA, BAC clone: B6Ng01-008J17, 5' end.DH844810|Mus musculus domesticus DNA, BAC clone: B6Ng01-008J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,552,152 - 53,552,571)(53,387,599 - 53,388,648)
sequence
aaaagcctgacaccacagaacagtctagacaggaggcaactcatttgcct
ttgtgtgtgtccttgtagtgtattttcttttgaaaattccacagtagacc
tcttttaacctattccatagaaatgtgaaaaagaaaaaaaaagtttacat
tttctataaagcaacatgatgaaaagttccagtcttgaccaaggtctagg
aaacgtggataaaacatatgcttttcatgtgactttcaagggccctctta
caccttctctctgctatgccaatgtcagcaatccagcaaagaatagcatt
gacaaagtatgctagttggagatggatgggatgattgaagccactttgct
tcatatctccacatatatacatggaccctttgggggcttggtgatggtga
tggtggaggttaca
gaattctgagccagagtgcagggatttcaggttttctgcacaactatgct
ctccagtgctgatggagtcccgtgactgtctccggaaatgctttcgtgat
agtctacagtaaagcacctgcagggaaggaggggaaaggtgactcccttt
ccttctggctctctccattttaagtcttgatagcccaggttcttctaggg
agtattttaggatattctgtacatgacaaaataacgtaagaatgtaataa
aaatagacatagaataattaagatcagatggagcccagagtaaagtcagc
aaacaaattgcatgccattaaggaacttaaatatgctatgaattttctag
cagccaaaggaaagcagcatgataccaattaagaccctgtccatgtgcac
atggttagaacaggctgcttgctcacgagaagccctgccgaggccagaca
catatatactttcactagattcctatgaggaggaaactatattaaacaca
ctcccctcttctttactctgagggaaaggttctccttctagtggcctcaa
caaaagccaaggcatagaaccagagggcagatagaacatgagccctgcag
tgcttctgtctgtgcgcctctccacggacatctttagagctaatagaaat
agggctttgaaaactttggttcaagccaaaaggctggctcagtggtaaag
cacttgttgtataagcctaacaacctgagttcatcctcagaacccatgtg
aaggtgaaaggagaaccgactcacacatctgacctctcatctccacatgt
gcgtcatgcagtgcacacctgtgctcacaagtgcatatgcaataataata
aagaacaagtttaaagtcttaggcacatgggattagcatcagggttctca
tacttctctatcctgctttctttcaccacaaactgtatgatattttgttt
gtttggtatgggaagaactcataactttcttctaattcttcaagaagatc
atgaacacagataatgttctgggatgctttaaattgtttgtctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_53552152_53552571
seq2: B6Ng01-008J17.b_43_462 (reverse)

seq1  TGTAACCTCCACCATCACCATCACCAAGCCCCCAAAGGGTCCATGTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCTCCACCATCACCATCACCAAGCCCCCAAAGGGTCCATGTATAT  50

seq1  ATGTGGAGATATGAAGCAAAGTGGCTTCAATCATCCCATCCATCTCCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAGATATGAAGCAAAGTGGCTTCAATCATCCCATCCATCTCCAAC  100

seq1  TAGCATACTTTGTCAATGCTATTCTTTGCTGGATTGCTGACATTGGCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATACTTTGTCAATGCTATTCTTTGCTGGATTGCTGACATTGGCATA  150

seq1  GCAGAGAGAAGGTGTAAGAGGGCCCTTGAAAGTCACATGAAAAGCATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAGAAGGTGTAAGAGGGCCCTTGAAAGTCACATGAAAAGCATATG  200

seq1  TTTTATCCACGTTTCCTAGACCTTGGTCAAGACTGGAACTTTTCATCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCCACGTTTCCTAGACCTTGGTCAAGACTGGAACTTTTCATCATG  250

seq1  TTGCTTTATAGAAAATGTAAACTTTTTTTTTCTTTTTCACATTTCTATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTATAGAAAATGTAAACTTTTTTTTTCTTTTTCACATTTCTATGG  300

seq1  AATAGGTTAAAAGAGGTCTACTGTGGAATTTTCAAAAGAAAATACACTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTTAAAAGAGGTCTACTGTGGAATTTTCAAAAGAAAATACACTAC  350

seq1  AAGGACACACACAAAGGCAAATGAGTTGCCTCCTGTCTAGACTGTTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACACACACAAAGGCAAATGAGTTGCCTCCTGTCTAGACTGTTCTGT  400

seq1  GGTGTCAGGCTTTTGAATTC  420
      ||||||||||||||||||||
seq2  GGTGTCAGGCTTTTGAATTC  420

seq1: chr12_53387599_53388648
seq2: B6Ng01-008J17.g_66_1111

seq1  GAATTCTGAGCCAGAGTGCAGGGATTTCAGGTTTTCTGCACAACTATGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGCCAGAGTGCAGGGATTTCAGGTTTTCTGCACAACTATGCT  50

seq1  CTCCAGTGCTGATGGAGTCCCGTGACTGTCTCCGGAAATGCTTTCGTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTGCTGATGGAGTCCCGTGACTGTCTCCGGAAATGCTTTCGTGAT  100

seq1  AGTCTACAGTAAAGCACCTGCAGGGAAGGAGGGGAAAGGTGACTCCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTACAGTAAAGCACCTGCAGGGAAGGAGGGGAAAGGTGACTCCCTTT  150

seq1  CCTTCTGGCTCTCTCCATTTTAAGTCTTGATAGCCCAGGTTCTTCTAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGGCTCTCTCCATTTTAAGTCTTGATAGCCCAGGTTCTTCTAGGG  200

seq1  AGTATTTTAGGATATTCTGTACATGACAAAATAACGTAAGAATGTAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTAGGATATTCTGTACATGACAAAATAACGTAAGAATGTAATAA  250

seq1  AAATAGACATAGAATAATTAAGATCAGATGGAGCCCAGAGTAAAGTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGACATAGAATAATTAAGATCAGATGGAGCCCAGAGTAAAGTCAGC  300

seq1  AAACAAATTGCATGCCATTAAGGAACTTAAATATGCTATGAATTTTCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATTGCATGCCATTAAGGAACTTAAATATGCTATGAATTTTCTAG  350

seq1  CAGCCAAAGGAAAGCAGCATGATACCAATTAAGACCCTGTCCATGTGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAAAGGAAAGCAGCATGATACCAATTAAGACCCTGTCCATGTGCAC  400

seq1  ATGGTTAGAACAGGCTGCTTGCTCACGAGAAGCCCTGCCGAGGCCAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTAGAACAGGCTGCTTGCTCACGAGAAGCCCTGCCGAGGCCAGACA  450

seq1  CATATATACTTTCACTAGATTCCTATGAGGAGGAAACTATATTAAACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATACTTTCACTAGATTCCTATGAGGAGGAAACTATATTAAACACA  500

seq1  CTCCCCTCTTCTTTACTCTGAGGGAAAGGTTCTCCTTCTAGTGGCCTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTCTTCTTTACTCTGAGGGAAAGGTTCTCCTTCTAGTGGCCTCAA  550

seq1  CAAAAGCCAAGGCATAGAACCAGAGGGCAGATAGAACATGAGCCCTGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCCAAGGCATAGAACCAGAGGGCAGATAGAACATGAGCCCTGCAG  600

seq1  TGCTTCTGTCTGTGCGCCTCTCCACGGACATCTTTAGAGCTAATAGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTGTCTGTGCGCCTCTCCACGGACATCTTTAGAGCTAATAGAAAT  650

seq1  AGGGCTTTGAAAACTTTGGTTCAAGCCAAAAGGCTGGCTCAGTGGTAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTTGAAAACTTTGGTTCAAGCCAAAAGGCTGGCTCAGTGGTAAAG  700

seq1  CACTTGTTGTATAAGCCTAACAACCTGAGTTCAATCCTCAGAACCCATGT  750
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CACTTGTTGTATAAGCCTAACAACCTGAGTTC-ATCCTCAGAACCCATGT  749

seq1  GAAGGTGAAAGGAGAACCGACTCACACATCTGACCTCTCATCTCCACATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGAAAGGAGAACCGACTCACACATCTGACCTCTCATCTCCACATG  799

seq1  TGCGTCATGCAGTGCACACCTGTGCTCACAAGTGCATATGCAATAATAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTCATGCAGTGCACACCTGTGCTCACAAGTGCATATGCAATAATAAT  849

seq1  AAAGAACAAGTTTTAAAGTCTTAGGCACAT-GGATTAGCATCAGGGTTCT  899
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  AAAGAACAAG-TTTAAAGTCTTAGGCACATGGGATTAGCATCAGGGTTCT  898

seq1  CATACTTCTCTATCCTGCTTTCCTTCCACCACAAACTGTATGATATTTTT  949
      ||||||||||||||||||||| ||| ||||||||||||||||||| ||||
seq2  CATACTTCTCTATCCTGCTTT-CTTTCACCACAAACTGTATGATA-TTTT  946

seq1  GTTTGTTTGGTTATGGGAAGAACCCATAACTTTCCTCTAATTCTTCAAAG  999
      |||||||||| |||||||||||| |||||||||| |||||||||||||  
seq2  GTTTGTTTGG-TATGGGAAGAACTCATAACTTTCTTCTAATTCTTCAAGA  995

seq1  AGACCATG-ACACAGGATAATGTTCTGGGATGCTTTTAAGTGTTTGTCTC  1048
      ||| |||| ||||| ||||||||||||||||||||| || ||||||||||
seq2  AGATCATGAACACA-GATAATGTTCTGGGATGCTTTAAATTGTTTGTCTC  1044

seq1  TG  1050
      ||
seq2  TG  1046