BAC Information

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BAC

Clone NameB6Ng01-009B03
Chromosome12 (Build37)
Map Location 64,490,163 - 64,637,414
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040438, 1700047L15Rik, Tspyl-ps, EG665741, EG382606
Downstream geneLOC435302, EG623046
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009B03.bB6Ng01-009B03.g
ACCDH845116DH845117
length1,1051,144
definitionDH845116|Mus musculus domesticus DNA, BAC clone: B6Ng01-009B03, 5' end.DH845117|Mus musculus domesticus DNA, BAC clone: B6Ng01-009B03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,636,295 - 64,637,414)(64,490,163 - 64,491,321)
sequence
gaattcttaaggtaaatattcatttgtctatgagagtcaatcttcatgac
ttcttgaaaagtaaaatttcattgtctgattttccacacatacatgctca
cacacataatgctacataaacatatatagcaccaagagtaaataatggag
aactttgggatagcaattcaaactcctattgatggaagttatgtcagaaa
gcagtactcagagtgttcacataaaacaggaactggagaggaagacaaga
tcagaagtttgagggaactggagaaacaatcgttgaaaccaatataaata
tttccaaaggggtcctgataaagcccttcaaatgcttataactctcattt
gctttttagctcatgtattcaggaaaatattgacttatcacattttctca
atagtttgggggtacttctgctttgctgcaattatctaagttcttctggc
aataagttttgaattcattcctgtatttattcctgagagagatgatccca
aatatcaacaactaagatgtggaaatagagtgcacatggaagtattaaga
attaattcaagagccaggcgtgatgccacacgcctttaatcccagcactc
aggaagcagaggcaggcagatttctgagtttgaggccagcctggtctaca
acgtgagtaccaggacagccagggctacacagagaaaccctgtctcgaaa
aacaaaaacaagaattaattctaaaatcacaatgattatttcatttaaac
tgattatttttaatatgatatataatcaataggagatataatatataagg
attgatagtatatagttataatagaatataatatagcaaatgaatagaag
atataataatagagatcaattcaaaagatttgatataaacaaaatccatg
tctgttatattcatgttaataaactgaatgtgaaagaaaagtatatttaa
atttgtcttatagcttatacatttattattgaaataatttactatcatca
gctactttcctttgaggtaaagtattatggacaatcaattggctaagtac
ggtggagggcactttttcattctcatttttcattagaggaattataggct
tctga
gaattccattgcagttccacaattatttaaaagcctgagtactttttgca
tgaatttatgggctatgtgtggtttcatccttgtaaaatgcttccttctc
cattaattttgttaactattgtgtatgctcaatttaagtggttggtgtat
taaaacattacaagtgagtatataataatgtatgtattttaaagtgctac
tgtttcttgagcattgaatattttaaattataatattcataaatatttta
tctgaataaaaatacataagcttttttttttcctgtgaggaatacttaca
attaaatttaatctaatattcaacatttgactagcctttatattttgatg
tgtgaaatattttagttgatgtactgtcttaaagtgtgtaaataattcat
ttaacttaataacctatattgcatagatttcaaaaatgtatatttgtttg
actgtttttaaatgatatatttttgcctattttgaacaagaaatgttttt
ctcatatatctgatttattattgaaagatttaataaatcaaagtataaaa
attttagatagagtttgttttgataataatgaatacttttcctcctaagt
atgcttcacacgttaatgacccatgtaaaaataaatgtgttcattgttga
agttggagaaaggttgctcttacagatgatgggagttcaattaccagtct
gaacatagtgactcatatgaccacaatcatctgtgatcccagtcccagga
catcttattccctcttctgaagtaggagatgcacaaacatgcatgcatgc
atgcacaaatatccataaacataaaaaaaggggaaatttatatatacatg
gtatttaaagttcaattttacatgggatatcaatattttatctttgagtc
ctattataatttgacaaatggtaaaactaaaacatttatttagcttttct
attataaaaataaaatttaagtttgtactggacattcacaatttaacagt
taaaatcatgttgccaactaaatagataatgatttttattattattggca
ttatttactggtccgaattggacatgtttagttgaccaaattaatggtgt
aatatggtgtatatttgatttcctagaaaacacaactatattta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_64636295_64637414
seq2: B6Ng01-009B03.b_47_1151 (reverse)

seq1  TCAGAAGGCTATAATTTACTATAATTGGAAAAACTGAGAATGAAAAAGTG  50
      ||||||| |||||| || || ||||  |||||| ||||||||||||||||
seq2  TCAGAAGCCTATAA-TTCCTCTAAT--GAAAAA-TGAGAATGAAAAAGTG  46

seq1  CCCTCACCCGTACTTTAGCCAATTGATTTGTCCATAAATACTTTTACCTT  100
      |||||  |||||| |||||||||||| |||||||| ||||| ||||||| 
seq2  CCCTCCACCGTAC-TTAGCCAATTGA-TTGTCCAT-AATAC-TTTACCTC  92

seq1  CAAAGCAAGTAGCTGCTG-TAGTAAATTTATTTTTCAATTATAAATGTAT  149
       || | ||||||||| || ||||||||   | ||||||| ||||||||||
seq2  AAAGGAAAGTAGCTGATGATAGTAAAT---TATTTCAATAATAAATGTAT  139

seq1  AAGTTATAAAGACAAATTTAAATATACTTTTCTTTCACATTCAGTTTTAT  199
      ||| ||| |||||||||||||||||||||||||||||||||||| |||||
seq2  AAGCTAT-AAGACAAATTTAAATATACTTTTCTTTCACATTCAG-TTTAT  187

seq1  TAAACATGAATATAACAGACATGGATTTTTGTTTATATCAAATCTTTTGA  249
      | ||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  T-AACATGAATATAACAGACATGGA-TTTTGTTTATATCAAATCTTTTGA  235

seq1  ATTTGATCTCTATTATTATATCTTCTATTCATTTGCTATATTATATTCTA  299
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TTGATCTCTATTATTATATCTTCTATTCATTTGCTATATTATATTCTA  284

seq1  TTATAACTATATACTATCAATCCTTATATATTATATCTCCTATTGATTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACTATATACTATCAATCCTTATATATTATATCTCCTATTGATTAT  334

seq1  ATATCATATTAAAAATAATCAGTTTAAATGAAATAATCATTGTGATTTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATATTAAAAATAATCAGTTTAAATGAAATAATCATTGTGATTTTA  384

seq1  GAATTAATTCTTGTTTTTGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAATTCTTGTTTTTGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCC  434

seq1  TGGCTGTCCTGGTACTCACGTTGTAGACCAGGCTGGCCTCAAACTCAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTCCTGGTACTCACGTTGTAGACCAGGCTGGCCTCAAACTCAGAA  484

seq1  ATCTGCCTGCCTCTGCTTCCTGAGTGCTGGGATTAAAGGCGTGTGGCATC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCTGCCTCTGCTTCCTGAGTGCTGGGATTAAAGGCGTGTGGCATC  534

seq1  ACGCCTGGCTCTTGAATTAATTCTTAATACTTCCATGTGCACTCTATTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTGGCTCTTGAATTAATTCTTAATACTTCCATGTGCACTCTATTTC  584

seq1  CACATCTTAGTTGTTGATATTTGGGATCATCTCTCTCAGGAATAAATACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTTAGTTGTTGATATTTGGGATCATCTCTCTCAGGAATAAATACA  634

seq1  GGAATGAATTCAAAACTTATTGCCAGAAGAACTTAGATAATTGCAGCAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAATTCAAAACTTATTGCCAGAAGAACTTAGATAATTGCAGCAAA  684

seq1  GCAGAAGTACCCCCAAACTATTGAGAAAATGTGATAAGTCAATATTTTCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGTACCCCCAAACTATTGAGAAAATGTGATAAGTCAATATTTTCC  734

seq1  TGAATACATGAGCTAAAAAGCAAATGAGAGTTATAAGCATTTGAAGGGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACATGAGCTAAAAAGCAAATGAGAGTTATAAGCATTTGAAGGGCT  784

seq1  TTATCAGGACCCCTTTGGAAATATTTATATTGGTTTCAACGATTGTTTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGGACCCCTTTGGAAATATTTATATTGGTTTCAACGATTGTTTCT  834

seq1  CCAGTTCCCTCAAACTTCTGATCTTGTCTTCCTCTCCAGTTCCTGTTTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCCCTCAAACTTCTGATCTTGTCTTCCTCTCCAGTTCCTGTTTTA  884

seq1  TGTGAACACTCTGAGTACTGCTTTCTGACATAACTTCCATCAATAGGAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACACTCTGAGTACTGCTTTCTGACATAACTTCCATCAATAGGAGT  934

seq1  TTGAATTGCTATCCCAAAGTTCTCCATTATTTACTCTTGGTGCTATATAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTGCTATCCCAAAGTTCTCCATTATTTACTCTTGGTGCTATATAT  984

seq1  GTTTATGTAGCATTATGTGTGTGAGCATGTATGTGTGGAAAATCAGACAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGTAGCATTATGTGTGTGAGCATGTATGTGTGGAAAATCAGACAA  1034

seq1  TGAAATTTTACTTTTCAAGAAGTCATGAAGATTGACTCTCATAGACAAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTTTACTTTTCAAGAAGTCATGAAGATTGACTCTCATAGACAAAT  1084

seq1  GAATATTTACCTTAAGAATTC  1120
      |||||||||||||||||||||
seq2  GAATATTTACCTTAAGAATTC  1105

seq1: chr12_64490163_64491321
seq2: B6Ng01-009B03.g_66_1209

seq1  GAATTCCATTGCAGTTCCACAATTATTTAAAAGCCTGAGTACTTTTTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGCAGTTCCACAATTATTTAAAAGCCTGAGTACTTTTTGCA  50

seq1  TGAATTTATGGGCTATGTGTGGTTTCATCCTTGTAAAATGCTTCCTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTATGGGCTATGTGTGGTTTCATCCTTGTAAAATGCTTCCTTCTC  100

seq1  CATTAATTTTGTTAACTATTGTGTATGCTCAATTTAAGTGGTTGGTGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATTTTGTTAACTATTGTGTATGCTCAATTTAAGTGGTTGGTGTAT  150

seq1  TAAAACATTACAAGTGAGTATATAATAATGTATGTATTTTAAAGTGCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACATTACAAGTGAGTATATAATAATGTATGTATTTTAAAGTGCTAC  200

seq1  TGTTTCTTGAGCATTGAATATTTTAAATTATAATATTCATAAATATTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTGAGCATTGAATATTTTAAATTATAATATTCATAAATATTTTA  250

seq1  TCTGAATAAAAATACATAAGCTTTTTTTTTTCCTGTGAGGAATACTTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATAAAAATACATAAGCTTTTTTTTTTCCTGTGAGGAATACTTACA  300

seq1  ATTAAATTTAATCTAATATTCAACATTTGACTAGCCTTTATATTTTGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTTAATCTAATATTCAACATTTGACTAGCCTTTATATTTTGATG  350

seq1  TGTGAAATATTTTAGTTGATGTACTGTCTTAAAGTGTGTAAATAATTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAATATTTTAGTTGATGTACTGTCTTAAAGTGTGTAAATAATTCAT  400

seq1  TTAACTTAATAACCTATATTGCATAGATTTCAAAAATGTATATTTGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTAATAACCTATATTGCATAGATTTCAAAAATGTATATTTGTTTG  450

seq1  ACTGTTTTTAAATGATATATTTTTGCCTATTTTGAACAAGAAATGTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTTTAAATGATATATTTTTGCCTATTTTGAACAAGAAATGTTTTT  500

seq1  CTCATATATCTGATTTATTATTGAAAGATTTAATAAATCAAAGTATAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATATCTGATTTATTATTGAAAGATTTAATAAATCAAAGTATAAAA  550

seq1  ATTTTAGATAGAGTTTGTTTTGATAATAATGAATACTTTTCCTCCTAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGATAGAGTTTGTTTTGATAATAATGAATACTTTTCCTCCTAAGT  600

seq1  ATGCTTCACACGTTAATGACCCATGTAAAAATAAATGTGTTCATTGTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCACACGTTAATGACCCATGTAAAAATAAATGTGTTCATTGTTGA  650

seq1  AGTTGGAGAAAGGTTGCTCTTACAGATGATGGGAGTTCAATTACCAGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGAGAAAGGTTGCTCTTACAGATGATGGGAGTTCAATTACCAGTCT  700

seq1  GAACATAGTGACTCATATGACCACAATCATCTGTGATCCCAGTCCCAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATAGTGACTCATATGACCACAATCATCTGTGATCCCAGTCCCAGGA  750

seq1  CATCTTATTCCCTCTTCTGAAGTAGGAGATGCACAAACATGCATGCATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTATTCCCTCTTCTGAAGTAGGAGATGCACAAACATGCATGCATGC  800

seq1  ATGCACAAATATCCATAAACATAAAAAAAGGGGAAATTTATATATACATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACAAATATCCATAAACATAAAAAAAGGGGAAATTTATATATACATG  850

seq1  GTATTTAAAGTTCAATTTTACATGGGATATCAATATTTTATCTTTGAGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAAAGTTCAATTTTACATGGGATATCAATATTTTATCTTTGAGTC  900

seq1  CTATTATAATTTGACAAATTGGTAAAACTAAAACATTTAATTTAGCCTTT  950
      |||||||||||||||||| ||||||||||||||||||| ||||||| |||
seq2  CTATTATAATTTGACAAA-TGGTAAAACTAAAACATTT-ATTTAGCTTTT  948

seq1  CTAATTATAAAAATAAAATTTAAGTTTGTTACTGGACATTCACAAATTTA  1000
      || ||||||||||||||||||||||||| |||||||||||||| ||||||
seq2  CT-ATTATAAAAATAAAATTTAAGTTTG-TACTGGACATTCAC-AATTTA  995

seq1  ACAGTTTAAAATCATGTTGGCAAACTAAATAGTTATATGAATTTTATTAT  1050
      |||| ||||||||||||| || |||||||||| || |||| |||||||||
seq2  ACAG-TTAAAATCATGTT-GCCAACTAAATAGATA-ATGATTTTTATTAT  1042

seq1  AATTTGCATTATTTACTGTTCGAATTTGTACTGTTTTAGTTGACCAGAAA  1100
       ||| ||||||||||||| ||  | ||| ||   |||||||||||  |||
seq2  TATTGGCATTATTTACTGGTCCGAATTGGACATGTTTAGTTGACC--AAA  1090

seq1  TTTATGTGTG-ATTATGTGTTTATATTTTGATTTCTATAATGAAAACACA  1149
      || ||| ||| | |||| || |||| |||||||||  ||  |||||||||
seq2  TTAATG-GTGTAATATG-GTGTATA-TTTGATTTC-CTA--GAAAACACA  1134

seq1  AATATATTTA  1159
      | ||||||||
seq2  ACTATATTTA  1144