BAC Information

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BAC

Clone NameB6Ng01-009B07
Chromosome12 (Build37)
Map Location 78,861,335 - 78,991,890
singlet/doubletdoublet
Overlap geneLOC666659
Upstream geneChurc1, Gpx2, Rab15, Fntb, Max, LOC100041765, LOC100041772, Fut8, LOC230765
Downstream geneEG626215, Gphn, 4921509E07Rik, Mpp5, Atp6v1d, LOC100041878, Eif2s1, Plek2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009B07.bB6Ng01-009B07.g
ACCDH845122DH845123
length1,1121,173
definitionDH845122|Mus musculus domesticus DNA, BAC clone: B6Ng01-009B07, 5' end.DH845123|Mus musculus domesticus DNA, BAC clone: B6Ng01-009B07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,990,772 - 78,991,890)(78,861,335 - 78,862,500)
sequence
gaattcctgttctgaaaggctgtctgggcatgtcagtgacatgtaatgac
atgtatatcattagtatactcatatggtgtatctcatatattatacaaca
taagcttatcactgctgtgtaaactgctatctgttctccaagtgtttttt
tcttgctgaggctcacagttagttttctttatcctggactcctttgcatt
ccctaggcactgccaaagggctggaatccgcttggtcacatatgaacaga
agcgttatctgtcacttctaggcttgattttgaagtcctgtcctatgtaa
actttgttccattctttccacgtggctgcaaagagaaaacagaactaaag
taacatagagcctcaaggctggaagaaccctggacggctgtgaggaacgt
gagtctcccaccatgcaccacatcaagctaccttgagacataagggagag
atggagcatcggatgttcagccactccggttctggtatccttacgcaatg
attagatggctatagctagtttatttatcttattaaagaagatacttcag
gtctccaggtagcagtaggagataatcttcctggagtaggaagctaatgt
aagtgtggcccaaatgggcaaagattaagcaaaccctaggaggagaagtc
agcgtcctcgtacaacggaggaatgctttgtgagaggacaagggcagttc
actgagaagcagataactctgtactccacaggatatctgctctttatttt
ttaatttcatggagctgtgtgtagaagtatatgatccaacacctttagaa
aaaaataagctagcaatgacaaaatgatccttttctccagcatcagaggg
cagtataaattcttttgattgtcagtcaaaagagaagtctgagtaattgt
actgaaagttatctgagatgattgcctcttgttctgaaggctcagaacct
cgtgtggagctgacttgagtttaaagtgcatttgttaagagttacggctt
agtcaatagttttaaagataaaatctaaacaacggccaaatttagaaatc
agtaatttgggtactttagctcatttgtaagaagaaggactaactcaaat
atgctggggcag
gaattcttaacaaacatcttccacaaagaaggtcatgaggaagaggcccc
tttctcatctgagttttaccatgtgcctggcttattagcgggtgctaaga
attgtttctggcccttgaccagctgagctatctctccagctctcatgatt
attttcaatgttttaatgcatgaatatgagaagcaaagttaatttgcaaa
tccaagatgttcctctggttgaatgatgacagtatgggtggtcaagcata
tcggggagtcaggaatgagggggcacctctcaggaggtcaaatagcctca
ccttggggtcaggagaagtttaggggaagaagaaatacttaaagagagag
ccgagggggaaagagaagcatgtagataatccgcaggatgggaactagtg
aggggctgggaagaggaagtgtgtgctgcaggcaaggggaccagctttgt
aaaatctggaagaaaagttcaagcaaattgtcaaagtaaatagatttcgg
tatagcaggggtagcatgtgactattggtgtgaaaggtcagaggtcagga
caatgtctcagggtaaaatgattcatctgatgtggggatccaggcattat
tggtctccgtgtccctgacagccatactcttgccctggctccatagtcag
acaagtgtgctcctctagctcttgactctgggccaggccacactgtttgt
cttggtcattggcgagtatgtagaagtaaccatgtgccacccgaagccca
gcttaagagattttgagtatttccatttgttccctgcacctctgcatttt
gccatgagaacaacaggcctcagccaacatgctgagcacagtaggaagat
tggaaacaaatggaacagagccaccccagctgtgcagcctgaagcagagc
ccagctgctcccaaaaccattaaggagaacgagatgtttttgtttggatg
cctctgtgatgttgagttctgcagcatctacatgttatggagccatggct
taccttagagccagctcccactaagaaagagattgagcagagactggctg
tgattgacgaagatccagaactccagagtttcaggacccctcaaaagctt
gctagagttaaaattgccttgtggggtgtctaaattgtaacaccctctct
cccctgaaggtggggaacatgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_78990772_78991890
seq2: B6Ng01-009B07.b_49_1160 (reverse)

seq1  CTGCCCCAGCACTAATTTGAGTTAGTACCTTTCTCCTTACAAATGAGCTA  50
      |||||||||||   ||||||||||||  | |||| |||||||||||||| 
seq2  CTGCCCCAGCA--TATTTGAGTTAGT--CCTTCTTCTTACAAATGAGCT-  45

seq1  AAAGTACCCAAAATAACTGGTTTCT-AATTTGGCCGTTGGTTTAGATTTT  99
      ||||||||| |||| |||| ||||| |||||||||||| |||||||||||
seq2  AAAGTACCC-AAATTACTGATTTCTAAATTTGGCCGTT-GTTTAGATTTT  93

seq1  ATCTTTAAAACTATTGACTAAGCCGTAACTCTTAACAAATGGCACTTTAA  149
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATCTTTAAAACTATTGACTAAGCCGTAACTCTTAACAAAT-GCACTTTAA  142

seq1  ACTCAAGTCAGCTCCACACGAGGTTCTGAGCCTTCAGAACAAGAGGCAAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGTCAGCTCCACACGAGGTTCTGAGCCTTCAGAACAAGAGGCAAT  192

seq1  CATCTCAGATAACCTTCAGTACAATTACTCAGACTTCTCTTTTGACTGAC  249
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CATCTCAGATAACTTTCAGTACAATTACTCAGACTTCTCTTTTGACTGAC  242

seq1  AATCAAAAGAATATATACTGCCCTCTGATGCTGGAGAAAAGGATCATTTT  299
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AATCAAAAGAATTTATACTGCCCTCTGATGCTGGAGAAAAGGATCATTTT  292

seq1  GTCATTGCTAGCTTATTTTTTTCTAAAGGTGTTGGATCATATACTTCTAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGCTAGCTTATTTTTTTCTAAAGGTGTTGGATCATATACTTCTAC  342

seq1  ACACAGCTCCATGAAATTAAAAAATAAAGAGCAGATATCCTGTGGAGTAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCTCCATGAAATTAAAAAATAAAGAGCAGATATCCTGTGGAGTAC  392

seq1  AGAGTTATCTGCTTCTCAGTGAACTGCCCTTGTCCTCTCACAAAGCATTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTATCTGCTTCTCAGTGAACTGCCCTTGTCCTCTCACAAAGCATTC  442

seq1  CTCCGTTGTACGAGGACGCTGACTTCTCCTCCTAGGGTTTGCTTAATCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTTGTACGAGGACGCTGACTTCTCCTCCTAGGGTTTGCTTAATCTT  492

seq1  TGCCCATTTGGGCCACACTTACATTAGCTTCCTACTCCAGGAAGATTATC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATTTGGGCCACACTTACATTAGCTTCCTACTCCAGGAAGATTATC  542

seq1  TCCTACTGCTACCTGGAGACCTGAAGTATCTTCTTTAATAAGATAAATAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTGCTACCTGGAGACCTGAAGTATCTTCTTTAATAAGATAAATAA  592

seq1  ACTAGCTATAGCCATCTAATCATTGCGTAAGGATACCAGAACCGGAGTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCTATAGCCATCTAATCATTGCGTAAGGATACCAGAACCGGAGTGG  642

seq1  CTGAACATCCGATGCTCCATCTCTCCCTTATGTCTCAAGGTAGCTTGATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACATCCGATGCTCCATCTCTCCCTTATGTCTCAAGGTAGCTTGATG  692

seq1  TGGTGCATGGTGGGAGACTCACGTTCCTCACAGCCGTCCAGGGTTCTTCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCATGGTGGGAGACTCACGTTCCTCACAGCCGTCCAGGGTTCTTCC  742

seq1  AGCCTTGAGGCTCTATGTTACTTTAGTTCTGTTTTCTCTTTGCAGCCACG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGAGGCTCTATGTTACTTTAGTTCTGTTTTCTCTTTGCAGCCACG  792

seq1  TGGAAAGAATGGAACAAAGTTTACATAGGACAGGACTTCAAAATCAAGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGAATGGAACAAAGTTTACATAGGACAGGACTTCAAAATCAAGCC  842

seq1  TAGAAGTGACAGATAACGCTTCTGTTCATATGTGACCAAGCGGATTCCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTGACAGATAACGCTTCTGTTCATATGTGACCAAGCGGATTCCAG  892

seq1  CCCTTTGGCAGTGCCTAGGGAATGCAAAGGAGTCCAGGATAAAGAAAACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGGCAGTGCCTAGGGAATGCAAAGGAGTCCAGGATAAAGAAAACT  942

seq1  AACTGTGAGCCTCAGCAAGAAAAAAACACTTGGAGAACAGATAGCAGTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGAGCCTCAGCAAGAAAAAAACACTTGGAGAACAGATAGCAGTTT  992

seq1  ACACAGCAGTGATAAGCTTATGTTGTATAATATATGAGATACACCATATG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCAGTGATAAGCTTATGTTGTATAATATATGAGATACACCATATG  1042

seq1  AGTATACTAATGATATACATGTCATTACATGTCACTGACATGCCCAGACA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATACTAATGATATACATGTCATTACATGTCACTGACATGCCCAGACA  1092

seq1  GCCTTTCAGAACAGGAATTC  1119
      ||||||||||||||||||||
seq2  GCCTTTCAGAACAGGAATTC  1112

seq1: chr12_78861335_78862500
seq2: B6Ng01-009B07.g_68_1240

seq1  GAATTCTTAACAAACATCTTCCACAAAGAAGGTCATGAGGAAGAGGCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAACAAACATCTTCCACAAAGAAGGTCATGAGGAAGAGGCCCC  50

seq1  TTTCTCATCTGAGTTTTACCATGTGCCTGGCTTATTAGCGGGTGCTAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATCTGAGTTTTACCATGTGCCTGGCTTATTAGCGGGTGCTAAGA  100

seq1  ATTGTTTCTGGCCCTTGACCAGCTGAGCTATCTCTCCAGCTCTCATGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTCTGGCCCTTGACCAGCTGAGCTATCTCTCCAGCTCTCATGATT  150

seq1  ATTTTCAATGTTTTAATGCATGAATATGAGAAGCAAAGTTAATTTGCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAATGTTTTAATGCATGAATATGAGAAGCAAAGTTAATTTGCAAA  200

seq1  TCCAAGATGTTCCTCTGGTTGAATGATGACAGTATGGGTGGTCAAGCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGATGTTCCTCTGGTTGAATGATGACAGTATGGGTGGTCAAGCATA  250

seq1  TCGGGGAGTCAGGAATGAGGGGGCACCTCTCAGGAGGTCAAATAGCCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGGAGTCAGGAATGAGGGGGCACCTCTCAGGAGGTCAAATAGCCTCA  300

seq1  CCTTGGGGTCAGGAGAAGTTTAGGGGAAGAAGAAATACTTAAAGAGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGGTCAGGAGAAGTTTAGGGGAAGAAGAAATACTTAAAGAGAGAG  350

seq1  CCGAGGGGGAAAGAGAAGCATGTAGATAATCCGCAGGATGGGAACTAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGGGGAAAGAGAAGCATGTAGATAATCCGCAGGATGGGAACTAGTG  400

seq1  AGGGGCTGGGAAGAGGAAGTGTGTGCTGCAGGCAAGGGGACCAGCTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTGGGAAGAGGAAGTGTGTGCTGCAGGCAAGGGGACCAGCTTTGT  450

seq1  AAAATCTGGAAGAAAAGTTCAAGCAAATTGTCAAAGTAAATAGATTTCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTGGAAGAAAAGTTCAAGCAAATTGTCAAAGTAAATAGATTTCGG  500

seq1  TATAGCAGGGGTAGCATGTGACTATTGGTGTGAAAGGTCAGAGGTCAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCAGGGGTAGCATGTGACTATTGGTGTGAAAGGTCAGAGGTCAGGA  550

seq1  CAATGTCTCAGGGTAAAATGATTCATCTGATGTGGGGATCCAGGCATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCTCAGGGTAAAATGATTCATCTGATGTGGGGATCCAGGCATTAT  600

seq1  TGGTCTCCGTGTCCCTGACAGCCATACTCTTGCCCTGGCTCCATAGTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCCGTGTCCCTGACAGCCATACTCTTGCCCTGGCTCCATAGTCAG  650

seq1  ACAAGTGTGCTCCTCTAGCTCTTGACTCTGGGCCAGGCCACACTGTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGTGCTCCTCTAGCTCTTGACTCTGGGCCAGGCCACACTGTTTGT  700

seq1  CTTGGTCATTGGCGAGTATGTAGAAGTAACCATGTGCCACCCGAAGCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCATTGGCGAGTATGTAGAAGTAACCATGTGCCACCCGAAGCCCA  750

seq1  GCTTAAGAGATTTTGAGTATTTCCATTTGTTCCCTGCACCTCTGCA-TTT  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCTTAAGAGATTTTGAGTATTTCCATTTGTTCCCTGCACCTCTGCATTTT  800

seq1  GCCATGAGAACAACAGGCCTCAGCCAACATGCTGAGCACAGTAGGAAGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGAGAACAACAGGCCTCAGCCAACATGCTGAGCACAGTAGGAAGAT  850

seq1  TGGAAACAAATGGAACAGAGCCACCCCAGCTGTGCAGCCTGAAGCAGAGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACAAATGGAACAGAGCCACCCCAGCTGTGCAGCCTGAAGCAGAGC  900

seq1  CCAGCTGCTCCCAAAACCATAAGGGAGAACGAGATGTTTTGGTTTGGATG  949
      |||||||||||||||||||| | ||||||||||||||||| |||||||||
seq2  CCAGCTGCTCCCAAAACCATTAAGGAGAACGAGATGTTTTTGTTTGGATG  950

seq1  CCTCTGTGATGTTGAGTTCTGCAGCATCTACATGTTATTGTAGCCATGGC  999
      ||||||||||||||||||||||||||||||||||||| || |||||||||
seq2  CCTCTGTGATGTTGAGTTCTGCAGCATCTACATGTTA-TGGAGCCATGGC  999

seq1  TAACTGAAGAGACAGC-CACACT-AGAAAGAGAATGAGCAAGAGACT-GC  1046
      | ||   |||| |||| | |||| ||||||||| ||||| ||||||| ||
seq2  TTACCTTAGAGCCAGCTCCCACTAAGAAAGAGATTGAGC-AGAGACTGGC  1048

seq1  TGTGATTGACAGAGATCCAGAACTCAGAAGTATCAGGACACCGAAGAAGC  1096
      ||||||||||  |||||||||||||   ||| ||||||| ||  | ||||
seq2  TGTGATTGACGAAGATCCAGAACTCCAGAGTTTCAGGACCCCTCAAAAGC  1098

seq1  TTGCTAAGAAGTTAAGAATGCC-TGT-GGGTGTCTTAATTG-GATAC---  1140
      ||||||   |||||| | |||| ||| |||||||| |||||  | ||   
seq2  TTGCTA--GAGTTAAAATTGCCTTGTGGGGTGTCTAAATTGTAACACCCT  1146

seq1  CTCTTCACTGAA-ATGGGGAACATGAG  1166
      |||| | |||||  |||||||||||||
seq2  CTCTCCCCTGAAGGTGGGGAACATGAG  1173