BAC Information

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BAC

Clone NameB6Ng01-009G11
Chromosome12 (Build37)
Map Location 97,989,358 - 98,120,592
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667688, Flrt2, 1700019M22Rik, LOC100039664
Downstream geneEG628277, LOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009G11.bB6Ng01-009G11.g
ACCDH845354DH845355
length1,1591,035
definitionDH845354|Mus musculus domesticus DNA, BAC clone: B6Ng01-009G11, 5' end.DH845355|Mus musculus domesticus DNA, BAC clone: B6Ng01-009G11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,989,358 - 97,990,529)(98,119,556 - 98,120,592)
sequence
gaattcaaaagattgtaagccagctgctttaacataccttataagagaag
tttgaagaaaacctcaaagttagggatggctttgctggatcattttatgt
catctgacacaagttatctgaaagtaggtaatatcaataatatctgaaag
taggtaatatcaataaagaaaatattccagcatgatccagctgttgggca
ttttcattgttagtgataatgtgtgagggcctagcccaatgtgcatggtg
ccatctctgggctagtaatcctaggttctatgggaaagcaggctgagcaa
gacatgaggagtgaggcagtaggcagcactcctatatggcctctcgatca
gggcctgcatacaggttcctgccctgtgtgaattgatgtcctgatgtcct
tccatggtgagcagtgatttggaagcacacaccaaataaacccattcaac
ccaagatgcttctggtcacgttgtttcctcacagcaatagtaaccctaac
taggacagtccatccttctcacattccataattaaagtatttgtcattct
atgaagttttaattaaaaatatcagtgttcagtagactaaactcaggaat
aaatttttctcctttgcagctttgaatatccctggattgtgataacacta
attagcatgaggcttatgtcctagattacagatcacacattaatataaaa
ggttaatttctttgagatatgaaattgagtttcaaggtgttggagatcga
atagagaagacatctaaggaactgttggaagagaaatgcaatgttcacag
gaaaaatgctgagttttgccaccgttgcacccctacagtactttaatatt
aaatgctttaatattaaatgtgaaggcattgaaggagcagttcattttta
aaaatccctgccaaggtccagcctcagtgtgaggagggtcctgagaaagc
gggatgggatcagataatgactcggagtcagtagtagatgcaaactgcta
gttcagtagtctgtttgttcatgatgattctcaggatttttattcctcgg
cttaatccttctcacttattcttcagctaatacagagagagctggaccct
gtctttttctttgctaatctacatcattcaggcttgaactttttccatat
ctattcaaa
gaattcctcctccttttataatatttattattattattaattattattat
tattattttcttgagctttaggcagcacagcctattagtgacttattgga
agaaaatcctgtctcaaaagggaaacattctaaaatcagaattttcatgc
actccgtctttcaatacacaatagccaccaagttctccctttacgactgg
gtaattccacatcccagaactcagtctcacagacgctctccattattgta
tgctatgattctcagaatgggctgatcaataggattgagctggcattttt
ttttttttatttttacccaagaaaacagccacttttcaaggcttacaaca
ttttagcatttttgtgtatttcaaataaactgtcagatttaaaaggtagg
gcatgggaagacaatggcttcctgatatggataaaatgtcaggaaaatag
ttcatccttttaatttatggctgattctgtccttctctgtgactttcact
ttgtttattctagtgttttcaggagaaagctgttgcaagatgcactgaac
aaaactttttatatttttaagaaccatgagaagagtgaggaaaaatttaa
atatcttacatggtaaaatggtaatagaggatgcattccataaagtaacc
aggcctacgaagttgccttcctgagctataacatgctattctattgactg
gaacagtggttcaccacatatttattactagtatactttgccagataatg
catttatattttgcacagtgcctgaacatgcaagcagtctatgagaaaaa
gagaaatatccactattatgagcataatatacaatttaattaaaccacac
atttcagttcattcattcaaacaatatttcttcatttcaaaattattttc
ccaatttatcatagcacaaaactgaatcaaatggtgacagcattaaggat
agagtttttagggagggggctgtagagttccagtgagcctccagtttagt
gatggccagtgctccattgataagtgaggggtctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_97989358_97990529
seq2: B6Ng01-009G11.b_47_1205

seq1  GAATTCAAAAGATTGTAAGCCAGCTGCTTTATCATACCTTATAAGAGAAG  50
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAATTCAAAAGATTGTAAGCCAGCTGCTTTAACATACCTTATAAGAGAAG  50

seq1  TTTGAAGAAAACCTCAAAGTTAGGGATGGCTTTGCTGGATCATTTTATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGAAAACCTCAAAGTTAGGGATGGCTTTGCTGGATCATTTTATGT  100

seq1  CATCTGACACAAGTTATCTGAAAGTAGGTAATATCAATAATATCTGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGACACAAGTTATCTGAAAGTAGGTAATATCAATAATATCTGAAAG  150

seq1  TAGGTAATATCAATAAAGAAAATATTCCAGCATGATCCAGCTGTTGGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAATATCAATAAAGAAAATATTCCAGCATGATCCAGCTGTTGGGCA  200

seq1  TTTTCATTGTTAGTGATAATGTGTGAGGGCCTAGCCCAATGTGCATGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTGTTAGTGATAATGTGTGAGGGCCTAGCCCAATGTGCATGGTG  250

seq1  CCATCTCTGGGCTAGTAATCCTAGGTTCTATGGGAAAGCAGGCTGAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTGGGCTAGTAATCCTAGGTTCTATGGGAAAGCAGGCTGAGCAA  300

seq1  GACATGAGGAGTGAGGCAGTAGGCAGCACTCCTATATGGCCTCTCGATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAGGAGTGAGGCAGTAGGCAGCACTCCTATATGGCCTCTCGATCA  350

seq1  GGGCCTGCATACAGGTTCCTGCCCTGTGTGAATTGATGTCCTGATGTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGCATACAGGTTCCTGCCCTGTGTGAATTGATGTCCTGATGTCCT  400

seq1  TCCATGGTGAGCAGTGATTTGGAAGCACACACCAAATAAACCCATTCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGTGAGCAGTGATTTGGAAGCACACACCAAATAAACCCATTCAAC  450

seq1  CCAAGATGCTTCTGGTCACGTTGTTTCCTCACAGCAATAGTAACCCTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATGCTTCTGGTCACGTTGTTTCCTCACAGCAATAGTAACCCTAAC  500

seq1  TAGGACAGTCCATCCTTCTCACATTCCATAATTAAAGTATTTGTCATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACAGTCCATCCTTCTCACATTCCATAATTAAAGTATTTGTCATTCT  550

seq1  ATGAAGTTTTAATTAAAAATATCAGTGTTCAGTAGACTAAACTCAGGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTTTTAATTAAAAATATCAGTGTTCAGTAGACTAAACTCAGGAAT  600

seq1  AAATTTTTCTCCTTTGCAGCTTTGAATATCCCTGGATTGTGATAACACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTCTCCTTTGCAGCTTTGAATATCCCTGGATTGTGATAACACTA  650

seq1  ATTAGCATGAGGCTTATGTCCTAGATTACAGATCACACATTAATATAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCATGAGGCTTATGTCCTAGATTACAGATCACACATTAATATAAAA  700

seq1  GGTTAATTTCTTTGAGATATGAAATTGAGTTTCAAGGTGTTGGAGATCGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAATTTCTTTGAGATATGAAATTGAGTTTCAAGGTGTTGGAGATCGA  750

seq1  ATAGAGAAGACATCTAAGGAACTGTTGGAAGAGAAATGCAATGTTCACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAAGACATCTAAGGAACTGTTGGAAGAGAAATGCAATGTTCACAG  800

seq1  GAAAAATGCTGAGTTTTGCCACCGTTGCACCCCTACAGTACTTTAATATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGCTGAGTTTTGCCACCGTTGCACCCCTACAGTACTTTAATATT  850

seq1  AAATGCTTTAATATTAAATGTGAAGGCATTGAAGGAGCAGTTCATTTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTTTAATATTAAATGTGAAGGCATTGAAGGAGCAGTTCATTTTTA  900

seq1  AAAATCCCTGCCAAGGTCCAGCCTCAGTGTGAGGAGGGTCCTGAGAAAGG  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAAATCCCTGCCAAGGTCCAGCCTCAGTGTGAGGAGGGTCCTGAGAAA-G  949

seq1  CGGGAATGGGAACAGAATAATGACTCGGAGTCAGTAGTAGATGCAAACTG  1000
      |||| |||||| ||| ||||||||||||||||||||||||||||||||||
seq2  CGGG-ATGGGATCAG-ATAATGACTCGGAGTCAGTAGTAGATGCAAACTG  997

seq1  CTAGTTCAGGTAGTCTGTCTGTTCCATGATGATTCTCAGTATTTTTTATT  1050
      |||||||| ||||||||| |||| ||||||||||||||| | ||||||||
seq2  CTAGTTCA-GTAGTCTGTTTGTT-CATGATGATTCTCAGGA-TTTTTATT  1044

seq1  CCTCGGCTTAATCCTTCTTCACCTTAATTCTTCAGCTTAATAACAAGAGA  1100
      ||||||||||||||||| ||||  | |||||||||| |||||   |||||
seq2  CCTCGGCTTAATCCTTC-TCAC--TTATTCTTCAGC-TAATA--CAGAGA  1088

seq1  GAGCCTGAACCCTGTC-TTTTCTTTGCTAAATCTACATCATCAAGGCTTT  1149
      ||| ||| |||||||| ||||||||||| ||||||||||||  |||| ||
seq2  GAG-CTGGACCCTGTCTTTTTCTTTGCT-AATCTACATCATTCAGGC-TT  1135

seq1  GAACATTTTTCATAACTA-TCAAA  1172
      |||| |||| |||| ||| |||||
seq2  GAACTTTTTCCATATCTATTCAAA  1159

seq1: chr12_98119556_98120592
seq2: B6Ng01-009G11.g_68_1102 (reverse)

seq1  GAGA-CCCTCACTTTAATC-ATGGAGACCTTGCCATCACTAAACTTGGAG  48
      |||| |||||||||  ||| ||||||  || ||||||||||||| |||||
seq2  GAGACCCCTCACTT--ATCAATGGAGCACTGGCCATCACTAAAC-TGGAG  47

seq1  ACTCACTTGAACTTCTAACAGTCCCCTCCCTAAAAACTCTTATCCTTTAA  98
       |||||| |||| ||| |||| ||||||||||||||||| ||||| ||||
seq2  GCTCACTGGAAC-TCT-ACAGCCCCCTCCCTAAAAACTC-TATCC-TTAA  93

seq1  TGCTGTCACCATTTGATTCAGTTTTGTGGCTATGATAAATTGGG-AAATA  147
      ||||||||||||||||||||||||||| |||||||||||||||| |||||
seq2  TGCTGTCACCATTTGATTCAGTTTTGT-GCTATGATAAATTGGGAAAATA  142

seq1  ATTTTG-AATGAAGAAATATTGTTTGAATGAATGAACTG-AATGTGTGGT  195
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  ATTTTGAAATGAAGAAATATTGTTTGAATGAATGAACTGAAATGTGTGGT  192

seq1  TTAATTAAATTGTATATTATGCTCATAATAGT-GATATTTCTCTTTTTCT  244
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTAATTAAATTGTATATTATGCTCATAATAGTGGATATTTCTCTTTTTCT  242

seq1  CATAGACTGCTTGCATGTTCAGGCACTGTGCAAAATATAAATGCATTATC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACTGCTTGCATGTTCAGGCACTGTGCAAAATATAAATGCATTATC  292

seq1  TGGCAAAGTATACTAGTAATAAATATGTGGTGAACCACTGTTCCAGTCAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAGTATACTAGTAATAAATATGTGGTGAACCACTGTTCCAGTCAA  342

seq1  TAGAATAGCATGTTATAGCTCAGGAAGGCAACTTCGTAGGCCTGGTTACT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATAGCATGTTATAGCTCAGGAAGGCAACTTCGTAGGCCTGGTTACT  392

seq1  TTATGGAATGCATCCTCTATTACCATTTTACCATGTAAGATATTTAAATT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGAATGCATCCTCTATTACCATTTTACCATGTAAGATATTTAAATT  442

seq1  TTTCCTCACTCTTCTCATGGTTCTTAAAAATATAAAAAGTTTTGTTCAGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCACTCTTCTCATGGTTCTTAAAAATATAAAAAGTTTTGTTCAGT  492

seq1  GCATCTTGCAACAGCTTTCTCCTGAAAACACTAGAATAAACAAAGTGAAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTGCAACAGCTTTCTCCTGAAAACACTAGAATAAACAAAGTGAAA  542

seq1  GTCACAGAGAAGGACAGAATCAGCCATAAATTAAAAGGATGAACTATTTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGAGAAGGACAGAATCAGCCATAAATTAAAAGGATGAACTATTTT  592

seq1  CCTGACATTTTATCCATATCAGGAAGCCATTGTCTTCCCATGCCCTACCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACATTTTATCCATATCAGGAAGCCATTGTCTTCCCATGCCCTACCT  642

seq1  TTTAAATCTGACAGTTTATTTGAAATACACAAAAATGCTAAAATGTTGTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATCTGACAGTTTATTTGAAATACACAAAAATGCTAAAATGTTGTA  692

seq1  AGCCTTGAAAAGTGGCTGTTTTCTTGGGTAAAAATAAAAAAAAAAAAATG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGAAAAGTGGCTGTTTTCTTGGGTAAAAATAAAAAAAAAAAAATG  742

seq1  CCAGCTCAATCCTATTGATCAGCCCATTCTGAGAATCATAGCATACAATA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCAATCCTATTGATCAGCCCATTCTGAGAATCATAGCATACAATA  792

seq1  ATGGAGAGCGTCTGTGAGACTGAGTTCTGGGATGTGGAATTACCCAGTCG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAGCGTCTGTGAGACTGAGTTCTGGGATGTGGAATTACCCAGTCG  842

seq1  TAAAGGGAGAACTTGGTGGCTATTGTGTATTGAAAGACGGAGTGCATGAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGAGAACTTGGTGGCTATTGTGTATTGAAAGACGGAGTGCATGAA  892

seq1  AATTCTGATTTTAGAATGTTTCCCTTTTGAGACAGGATTTTCTTCCAATA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGATTTTAGAATGTTTCCCTTTTGAGACAGGATTTTCTTCCAATA  942

seq1  AGTCACTAATAGGCTGTGCTGCCTAAAGCTCAAGAAAATAATAATAATAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTAATAGGCTGTGCTGCCTAAAGCTCAAGAAAATAATAATAATAA  992

seq1  TAATTAATAATAATAATAAATATTATAAAAGGAGGAGGAATTC  1037
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATAATAATAATAAATATTATAAAAGGAGGAGGAATTC  1035