BAC Information

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BAC

Clone NameB6Ng01-009H02
Chromosome12 (Build37)
Map Location 73,330,552 - 73,455,326
singlet/doubletdoublet
Overlap geneRtn1
Upstream gene2700049A03Rik, LOC666162, Dact1, LOC100041190, Daam1, LOC666213, LOC666220, Gpr135, LOC100041239, 2810055F11Rik, 1200003C05Rik, 4930403N07Rik
Downstream geneLrrc9, 1810048J11Rik, LOC209183, LOC100041323, Dhrs7, LOC100041157, 5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234, Six1, Six4, Mnat1, Trmt5, Slc38a6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009H02.bB6Ng01-009H02.g
ACCDH845380DH845381
length1,1091,119
definitionDH845380|Mus musculus domesticus DNA, BAC clone: B6Ng01-009H02, 5' end.DH845381|Mus musculus domesticus DNA, BAC clone: B6Ng01-009H02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,330,552 - 73,331,683)(73,454,208 - 73,455,326)
sequence
gaattccacttacgaagacagagtctcccacacagtgagacttcaaagca
ttagtccaggagccccgagcccagctgggcatctgctggcagaactcctg
gtaccctttcttcataccacctaaacacagccaagctagctgtcaagaaa
aaaatgccaacactatttctagatgtttcagtaaccctgtggatgatttc
aaagggaaggtgtgggaaactcggcatttcctacacaccgtgaaagggct
cagcatttaatccactctagatgagctttggaggaaagacggaaaagaaa
ggatttcattgtcaaagccacagccaagagcaatgtctggtacctttttc
tgtggatgtatagtacagtccccgcttgctgcttcttggcttgcatggat
gcttaggcaagcctcgccatttccctctgccagaagtgaggctgattctc
atcttcaagctggcagcagtacctttcctgttctctacttcctaggaggg
gagcttggtcctggacaattaggaccagcaagtgaggccccatgggatgt
agacattaaaacaagtcagctagcttcacttctttctatgtcttaagcta
agtcaaggccttactggcaagagtctccccacaaactgtgatgcaggagg
caaaggctgcgggaagggagcatcgtgtccgaggctaggaagatgctaca
agacacagaggaccaaacagtgcaacagcaaaactattccttgaaccgaa
aacaaaaagcataaagaggaattatttctcatcacattcggtcccatttg
ttaaattacttgctcttacaaaggtggtcatattttactcctctcctcac
caaactacagagtggtaaacatcgaatctgatgacagctaacacttgatt
gtttttagctgtatttagtcagatatatctttatttattttgtttatctg
agttatgtatttggtggcctagaattactctagagcctggtggctcaagt
catgggacttctctgctcatctggatgctaggatccttgtgtgagcacat
gctgggctcagaacttttgtttagagaatgtaaatcaagtgtccaactgg
attctgagt
gaattccttttgctttttacttggtaccaacttgttgggggtggatggaa
ggttcttccgttccaactttagctttagtcaagatctctaagctggaatc
taaaggaaactctttcttaatgtccctgcccctctatgtttggctaccaa
attctgccttgtagagtttggcaggctcggcaaagctaaggacactctcc
tagaagccctcagcagtgccctagagagcagatctgtttggatgcagaat
gctggtcctgaaagacctttctctccctctgtgagtacaagaacctaatt
tctgtatttctcacagacaagatagttttcccccttgaatcctgacagtg
gggaaggtgtcttgtcatgtccctcggcactttaagggaccccacacaca
cacacacacacaccccaggagagaagaaatggggctgtatttcacatagg
ccctcccaacccaccactcaggagctcatcactgggccaccaaaaggctt
cttctactcttctgtcccttcatggagaagagtgagaactctctatgtgc
ctgggctccagctctgaaaggatgtgtcagcttgtattcaaacttgttag
ccctccagatgacttatcctttttctgtggtggctgtctcttcctcccat
gctctgtcacagatgaacaggctcatacatcccactctctctttgagggc
tttggctttgaaattcattttccttggttgctttataatccgaactatct
cttggttttgagaacatttatgattttgcagatgacctagatctgtcttt
gactctttaaacatgaaccatgttttcctgatgctttctatgccttaaga
attcttccccgaggggttattatgtatgagtgaactttgccgagtatggc
tgatttcagaaaacatgtttcaattcaggataactacatcattcttagct
tcattttaaaattcattttgaaaagtttcatattcttttttttttcatct
aaaaccatggaaagatttttttctttcttataagaaaacctcctatgaat
tagggccaattgaaatacagtcaaggcatattcacttgatacacgtgaag
gagaaattatacatgtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_73330552_73331683
seq2: B6Ng01-009H02.b_45_1153

seq1  GAATTCCACTTACGAAGACAGAGTCTCCCACACAGTGAGACTTCAAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTACGAAGACAGAGTCTCCCACACAGTGAGACTTCAAAGCA  50

seq1  TTAGTCCAGGAGCCCCGAGCCCAGCTGGGCATCTGCTGGCAGAACTCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCCAGGAGCCCCGAGCCCAGCTGGGCATCTGCTGGCAGAACTCCTG  100

seq1  GTACCCTTTCTTCATACCACCTAAACACAGCCAAGCTAGCTGTCAAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCTTTCTTCATACCACCTAAACACAGCCAAGCTAGCTGTCAAGAAA  150

seq1  AAAATGCCAACACTATTTCTAGATGTTTCAGTAACCCTGTGGATGATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCCAACACTATTTCTAGATGTTTCAGTAACCCTGTGGATGATTTC  200

seq1  AAAGGGAAGGTGTGGGAAACTCGGCATTTCCTACACACCGTGAAAGGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAAGGTGTGGGAAACTCGGCATTTCCTACACACCGTGAAAGGGCT  250

seq1  CAGCATTTAATCCACTCTAGATGAGCTTTGGAGGAAAGACGGAAAAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTTAATCCACTCTAGATGAGCTTTGGAGGAAAGACGGAAAAGAAA  300

seq1  GGATTTCATTGTCAAAGCCACAGCCAAGAGCAATGTCTGGTACCTTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCATTGTCAAAGCCACAGCCAAGAGCAATGTCTGGTACCTTTTTC  350

seq1  TGTGGATGTATAGTACAGTCCCCGCTTGCTGCTTCTTGGCTTGCATGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATGTATAGTACAGTCCCCGCTTGCTGCTTCTTGGCTTGCATGGAT  400

seq1  GCTTAGGCAAGCCTCGCCATTTCCCTCTGCCAGAAGTGAGGCTGATTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGGCAAGCCTCGCCATTTCCCTCTGCCAGAAGTGAGGCTGATTCTC  450

seq1  ATCTTCAAGCTGGCAGCAGTACCTTTCCTGTTCTCTACTTCCTAGGAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAAGCTGGCAGCAGTACCTTTCCTGTTCTCTACTTCCTAGGAGGG  500

seq1  GAGCTTGGTCCTGGACAATTAGGACCAGCAAGTGAGGCCCCATGGGATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGGTCCTGGACAATTAGGACCAGCAAGTGAGGCCCCATGGGATGT  550

seq1  AGACATTAAAACAAGTCAGCTAGCTTCACTTCTTTCTATGTCTTAAGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTAAAACAAGTCAGCTAGCTTCACTTCTTTCTATGTCTTAAGCTA  600

seq1  AGTCAAGGCCTTACTGGCAAGAGTCTCCCCACAAACTGTGATGCAGGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGGCCTTACTGGCAAGAGTCTCCCCACAAACTGTGATGCAGGAGG  650

seq1  CAAAGGCTGCGGGAAGGGAGCATCGTGTCCGAGGCTAGGAAGATGCTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCTGCGGGAAGGGAGCATCGTGTCCGAGGCTAGGAAGATGCTACA  700

seq1  AGACACAGAGGACCAAACAGTGCAACAGCAAAACTATTCCTTGAACCGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAGAGGACCAAACAGTGCAACAGCAAAACTATTCCTTGAACCGAA  750

seq1  AACAAAAAGCATAAAGAGGAATTATTTCTCATCACATTCGGTCCCATTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAGCATAAAGAGGAATTATTTCTCATCACATTCGGTCCCATTTG  800

seq1  TTAAATTACTTGCTCTTACAAAGGTGGTCATATTTTACTCCTCTCCTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTACTTGCTCTTACAAAGGTGGTCATATTTTACTCCTCTCCTCAC  850

seq1  CAAACTACAGAGTGGTAAACATCGAATCTGATGACAGCTAACACTTGATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTACAGAGTGGTAAACATCGAATCTGATGACAGCTAACACTTGATT  900

seq1  GTTTTTAGCTGTTATTTAGTCAGATAATATCTTTATTTATTTTGTTTATC  950
      ||||||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  GTTTTTAGCTG-TATTTAGTCAGAT-ATATCTTTATTTATTTTGTTTATC  948

seq1  TTGAGTTATGTTATTTGGTTGGCCTAGAATTTACTCTAGAGCCCTGGGTG  1000
       ||||||||| ||||||| |||||||||| |||||||||||||   ||||
seq2  -TGAGTTATG-TATTTGG-TGGCCTAGAA-TTACTCTAGAGCC--TGGTG  992

seq1  GCCTCAAAGTCATGGGACTTCTCCTGCCTCCATTCTGGATGCTAGGATTC  1050
      | ||| |||||||||||||||| ||| |||   ||||||||||||||| |
seq2  G-CTC-AAGTCATGGGACTTCT-CTG-CTC--ATCTGGATGCTAGGATCC  1036

seq1  TATGTGTGAGCCACCATGCTGGGCTCAGACTATGTGTTTTAGAGAATTGT  1100
      | |||||||||   |||||||||||||||   | || ||||||||| |||
seq2  T-TGTGTGAGC--ACATGCTGGGCTCAGAACTTTTG-TTTAGAGAA-TGT  1081

seq1  TAATATCAAGTGTTCAACCTTGATTTCTGAGT  1132
        | ||||||||| ||||  ||  ||||||||
seq2  --AAATCAAGTGTCCAAC--TGGATTCTGAGT  1109

seq1: chr12_73454208_73455326
seq2: B6Ng01-009H02.g_69_1187 (reverse)

seq1  AAAAAATGTATAAATTTCTC--TCTACTGTAATCAAGTGAATTATGCCTT  48
      |||| |||||| ||||||||  ||   ||| |||||||||| ||||||||
seq2  AAAACATGTAT-AATTTCTCCTTCACGTGT-ATCAAGTGAA-TATGCCTT  47

seq1  GACTGTATTTACAAATGGCCCTAA-TCATGTGA-GTTTTCTTAATAG-AA  95
      |||||||||| ||| ||||||||| ||||  || |||||||||  || ||
seq2  GACTGTATTT-CAATTGGCCCTAATTCATAGGAGGTTTTCTTATAAGAAA  96

seq1  GAAAAAAATCTTTCCATGGTTTTAGATGGAAAAAAAAAAGAATATGAAAC  145
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAAAAAAATCTTTCCATGGTTTTAGAT-GAAAAAAAAAAGAATATGAAAC  145

seq1  TTTTTCAAAATGAATTTTAAAATGAAGCTAAGAATGATGTAGTTATCCTG  195
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTTCAAAATGAATTTTAAAATGAAGCTAAGAATGATGTAGTTATCCTG  194

seq1  AATTGAAACATGTTTTCTGAAATCAGCCATACTCGGCAAAGTTCACTCAT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAACATGTTTTCTGAAATCAGCCATACTCGGCAAAGTTCACTCAT  244

seq1  ACATAATAACCCCTCGGGGAAGAATTCTTAAGGCATAGAAAGCATCAGGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATAACCCCTCGGGGAAGAATTCTTAAGGCATAGAAAGCATCAGGA  294

seq1  AAACATGGTTCATGTTT-AAGAGTCAAAGACAGATCTAGGTCATCTGCAA  344
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAACATGGTTCATGTTTAAAGAGTCAAAGACAGATCTAGGTCATCTGCAA  344

seq1  AATCATAAATGTTCTCAAAACCAAGAGATAGTTCGGATTATAAAGCAACC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATAAATGTTCTCAAAACCAAGAGATAGTTCGGATTATAAAGCAACC  394

seq1  AAGGAAAATGAATTTCAAAGCCAAAGCCCTCAAAGAGAGAGTGGGATGTA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAATGAATTTCAAAGCCAAAGCCCTCAAAGAGAGAGTGGGATGTA  444

seq1  TGAGCCTGTTCATCTGTGACAGAGCATGGGAGGAAGAGACAGCCACCACA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTGTTCATCTGTGACAGAGCATGGGAGGAAGAGACAGCCACCACA  494

seq1  GAAAAAGGATAAGTCATCTGGAGGGCTAACAAGTTTGAATACAAGCTGAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGGATAAGTCATCTGGAGGGCTAACAAGTTTGAATACAAGCTGAC  544

seq1  ACATCCTTTCAGAGCTGGAGCCCAGGCACATAGAGAGTTCTCACTCTTCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTTTCAGAGCTGGAGCCCAGGCACATAGAGAGTTCTCACTCTTCT  594

seq1  CCATGAAGGGACAGAAGAGTAGAAGAAGCCTTTTGGTGGCCCAGTGATGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAGGGACAGAAGAGTAGAAGAAGCCTTTTGGTGGCCCAGTGATGA  644

seq1  GCTCCTGAGTGGTGGGTTGGGAGGGCCTATGTGAAATACAGCCCCATTTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGAGTGGTGGGTTGGGAGGGCCTATGTGAAATACAGCCCCATTTC  694

seq1  TTCTCTCCTGGGGTGTGTGTGTGTGTGTGTGTGGGGTCCCTTAAAGTGCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCCTGGGGTGTGTGTGTGTGTGTGTGTGGGGTCCCTTAAAGTGCC  744

seq1  GAGGGACATGACAAGACACCTTCCCCACTGTCAGGATTCAAGGGGGAAAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGACATGACAAGACACCTTCCCCACTGTCAGGATTCAAGGGGGAAAA  794

seq1  CTATCTTGTCTGTGAGAAATACAGAAATTAGGTTCTTGTACTCACAGAGG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTGTCTGTGAGAAATACAGAAATTAGGTTCTTGTACTCACAGAGG  844

seq1  GAGAGAAAGGTCTTTCAGGACCAGCATTCTGCATCCAAACAGATCTGCTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAAGGTCTTTCAGGACCAGCATTCTGCATCCAAACAGATCTGCTC  894

seq1  TCTAGGGCACTGCTGAGGGCTTCTAGGAGAGTGTCCTTAGCTTTGCCGAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGGCACTGCTGAGGGCTTCTAGGAGAGTGTCCTTAGCTTTGCCGAG  944

seq1  CCTGCCAAACTCTACAAGGCAGAATTTGGTAGCCAAACATAGAGGGGCAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCAAACTCTACAAGGCAGAATTTGGTAGCCAAACATAGAGGGGCAG  994

seq1  GGACATTAAGAAAGAGTTTCCTTTAGATTCCAGCTTAGAGATCTTGACTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTAAGAAAGAGTTTCCTTTAGATTCCAGCTTAGAGATCTTGACTA  1044

seq1  AAGCTAAAGTTGGAACGGAAGAACCTTCCATCCACCCCCAACAAGTTGGT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAAAGTTGGAACGGAAGAACCTTCCATCCACCCCCAACAAGTTGGT  1094

seq1  ACCAAGTAAAAAGCAAAAGGAATTC  1119
      |||||||||||||||||||||||||
seq2  ACCAAGTAAAAAGCAAAAGGAATTC  1119