BAC Information

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BAC

Clone NameB6Ng01-009H14
Chromosome12 (Build37)4 (Build37)
Map Location 32,631,616 - 32,631,83964,151,717 - 64,152,841
singlet/doubletsingletsinglet
Overlap geneHbp1
Upstream geneSh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
Downstream genePrkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009H14.bB6Ng01-009H14.g
ACCDH845403DH845404
length6871,112
definitionDH845403|Mus musculus domesticus DNA, BAC clone: B6Ng01-009H14, 5' end.DH845404|Mus musculus domesticus DNA, BAC clone: B6Ng01-009H14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,631,616 - 32,631,839)(64,151,717 - 64,152,841)
sequence
gaattcatgaaattcctaggcaaatggatggacctggagggcatcatcct
gagtgaggtaacccaatcacaaaagaactcgcacaatataagtggatatt
agcccagttacttaggatacccaagatataagatacaatttgctaaatgc
atgaaactcaagaggaatgaaaaccaaagtgtggacactttgccccttct
taaaattgggaacaaaacacccacggaaggagttacatagacaaagtttg
gagctgagactaaaggatgcaccatctagagactgccagatccagggatc
catcccataatcagcttccaaacgctgacaccattgcatatactaacaag
attttgctgaaaggacccagatatggatgtctcttgtgagactatgccgg
ggcctggcacacagaagtggatgctcacagtcagttattggatggatcac
aggaccccgaatgaaggagttagagaaagtacccaaggatctgaagggat
ctgcaatcctataggtggaaccacaatatgaactaaccagtaccccccca
ccccacggagctcgtgtctctagctgcatatgaatcagaagatggtctag
tcagccatcagtggaaagagaggcccattggttgtgcaaactttatatgc
ctcagtacaggggaatgccagggccaagaagtgggag
gaattcagccctagcgctacgttaaagcaagaacatgctgtcaggtagtt
tttcactattgccttcatctgccaaaatgctcttactggaacctgctact
aatcttcattctcaccactcatgctggcccctcttgccacttcgtctcat
gcctcccttctaagtttgaaaagacttttcttttttttaattattagata
ttttcttcacttacttttctttttctttttttaattagatattttcttta
tatacatttcaaatgctatcccaaaagttccctataccctccctccaccc
tgctcccctacccacccactcccatttcttggccttggcattcccctgta
ttggggcatataaagtttgcaataccaaggggcctctcttcccagtgata
accgactaggccatcttctgctacatatgcagctagagataggagctctg
ggggtcctgagacgttcatattgttgttccacctatagggttgcagaccc
tttcagctccttggttgctttctctagcttctccattggggaccctgtgt
tccatcttggagctaagatgaaaggatggactatccagagactaccccac
ctggggatccatcccataatcagccaccaaacccagacactattgcatat
gtcagcaagattttgctgaaaggaccctgatatagctgtctcctatgagg
ctatgccagtgcctggcaaatacagaagtggatgctcacttacttttcaa
atgctatttactttcctagtttcctccctgaatgtcccctattccctccc
cactccccttgctccctaaccccccactccacaatagcttctcaaaccta
tcatatatcagataggcaaaatattctggccaagttgataacagaatgct
atgtgtcattgtctaggagtcttgaatgtccttctttctctagaacttta
tgtcgacaggcaaatttttttttttctgcagtattaagatgtcttccctc
tgaactccagcccatatgccccagtgctgtgcatcatttcttagatttct
tctgactgtcttttgagtctgtaataaaagaaattatctcaaaagaagct
atcaacagattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32631616_32631839
seq2: B6Ng01-009H14.b_452_730 (reverse)

seq1  CTCCCACTTCTTGGCCCTGGC-----------------------AAG---  24
      |||||||||||||||||||||                       |||   
seq2  CTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAAGTTT  50

seq1  -----ACCCATGGGCCTCTCTTTCCACTGA----------------CTTC  53
           ||| |||||||||||||||||||||                ||||
seq2  GCACAACCAATGGGCCTCTCTTTCCACTGATGGCTGACTAGACCATCTTC  100

seq1  TGATACATACGCAGCTAGAGACACGAGCTCC---------GGGGGTACTG  94
      |||| |||| |||||||||||||||||||||         ||||||||||
seq2  TGATTCATATGCAGCTAGAGACACGAGCTCCGTGGGGTGGGGGGGTACTG  150

seq1  GTCAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTC  144
      || |||||||| ||| |||||||||||||| ||||||| ||||| || ||
seq2  GTTAGTTCATATTGTGGTTCCACCTATAGGATTGCAGATCCCTTCAGATC  200

seq1  CTTGGGTACTTTCTCTAACTCCTCCATTGGGGACCCTGTGATCCTATCCA  194
      ||||||||||||||||||||||| |||| |||  |||||||||| |||||
seq2  CTTGGGTACTTTCTCTAACTCCTTCATTCGGGGTCCTGTGATCC-ATCCA  249

seq1  ATAGCTGACTGTGAGCATCCACTTCTGTGT  224
      ||| ||||||||||||||||||||||||||
seq2  ATAACTGACTGTGAGCATCCACTTCTGTGT  279

seq1: chr4_64151717_64152841
seq2: B6Ng01-009H14.g_70_1181

seq1  GAATTCAGCCCTAGCGCTACGTTAAAGCAAGAACATGCTGTCAGGTAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCCTAGCGCTACGTTAAAGCAAGAACATGCTGTCAGGTAGTT  50

seq1  TTTCACTATTGCCTTCATCTGCCAAAATGCTCTTACTGGAACCTGCTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTATTGCCTTCATCTGCCAAAATGCTCTTACTGGAACCTGCTACT  100

seq1  AATCTTCATTCTCACCACTCATGCTGGCCCCTCTTGCCACTTCGTCTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCATTCTCACCACTCATGCTGGCCCCTCTTGCCACTTCGTCTCAT  150

seq1  GCCTCCCTTCTAAGTTTGAAAAGACTTTTCTTTTTTTTAATTATTAGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCTTCTAAGTTTGAAAAGACTTTTCTTTTTTTTAATTATTAGATA  200

seq1  TTTTCTTCACTTACTTTTCTTTTTCTTTTTTTAATTAGATATTTTCTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCACTTACTTTTCTTTTTCTTTTTTTAATTAGATATTTTCTTTA  250

seq1  TATACATTTCAAATGCTATCCCAAAAGTTCCCTATACCCTCCCTCCACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATTTCAAATGCTATCCCAAAAGTTCCCTATACCCTCCCTCCACCC  300

seq1  TGCTCCCCTACCCACCCACTCCCATTTCTTGGCCTTGGCATTCCCCTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCCTACCCACCCACTCCCATTTCTTGGCCTTGGCATTCCCCTGTA  350

seq1  TTGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCTTCCCAGTGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCTTCCCAGTGATA  400

seq1  ACCGACTAGGCCATCTTCTGCTACATATGCAGCTAGAGATAGGAGCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGACTAGGCCATCTTCTGCTACATATGCAGCTAGAGATAGGAGCTCTG  450

seq1  GGGGTCCTGAGACGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCCTGAGACGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACCC  500

seq1  TTTCAGCTCCTTGGTTGCTTTCTCTAGCTTCTCCATTGGGGACCCTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCTCCTTGGTTGCTTTCTCTAGCTTCTCCATTGGGGACCCTGTGT  550

seq1  TCCATCTTGGAGCTAAGATGAAAGGATGGACTATCCAGAGACTACCCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTGGAGCTAAGATGAAAGGATGGACTATCCAGAGACTACCCCAC  600

seq1  CTGGGGATCCATCCCATAATCAGCCACCAAACCCAGACACTATTGCATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGATCCATCCCATAATCAGCCACCAAACCCAGACACTATTGCATAT  650

seq1  GTCAGCAAGATTTTGCTGAAAGGACCCTGATATAGCTGTCTCCTATGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCAAGATTTTGCTGAAAGGACCCTGATATAGCTGTCTCCTATGAGG  700

seq1  CTATGCCAGTGCCTGGCAAATACAGAAGTGGATGCTCACTTACTTTTCAA  750
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTATGCCAGTGCCTGGCAAATACAGAAGTGGATGCTCACTTACTTTTC-A  749

seq1  AATGCTATTTACTTTCCTAGTTTCCTCCCTGAATGTCCCCTATTCCCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTATTTACTTTCCTAGTTTCCTCCCTGAATGTCCCCTATTCCCTCC  799

seq1  CCACTCCCCTTGCTCCCTAACCCACCCACTCCCACAATAGCTTCTCAAAC  850
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  CCACTCCCCTTGCTCCCTAACCC-CCCACT-CCACAATAGCTTCTCAAAC  847

seq1  CTATCATATATCAGATAGGCAAAATAATTCTGGCCAAGTTGATAGCAGAA  900
      ||||||||||||||||||||||||| |||||||||||||||||| |||||
seq2  CTATCATATATCAGATAGGCAAAAT-ATTCTGGCCAAGTTGATAACAGAA  896

seq1  TGCTATGTGTCATTGTCTAGGAGTCTTGAATGTCCTTCCTTTCCTTGGAA  950
      ||||||||||||||||||||||||||||||||||||| |||||  | |||
seq2  TGCTATGTGTCATTGTCTAGGAGTCTTGAATGTCCTT-CTTTCTCTAGAA  945

seq1  CTTTATGTCAGACAGGCAGA-TTTTTTTTTTCTGCAAGTATTTAGAGTGT  999
      ||||||||| |||||||| | |||||||||||||| |||||| ||| |||
seq2  CTTTATGTC-GACAGGCAAATTTTTTTTTTTCTGC-AGTATTAAGA-TGT  992

seq1  CTTCCCTCTGTACTACAAGCCCATATGCCCAAGTGCTGTGGCATCAGTTT  1049
      |||||||||| ||| | ||||||||||||| |||||||| |||||| |||
seq2  CTTCCCTCTGAACT-CCAGCCCATATGCCCCAGTGCTGT-GCATCA-TTT  1039

seq1  CTTAGATTTCTTCTGACTGTCTTTGATGTCTGTAATACAAAAGAAATTTA  1099
      ||||||||||||||||||||||||   |||||||||  ||||||||||  
seq2  CTTAGATTTCTTCTGACTGTCTTTTGAGTCTGTAAT--AAAAGAAATTAT  1087

seq1  CCCAGAAGATGCTAATCAACAGATTT  1125
      | || |||| ||| ||||||||||||
seq2  CTCAAAAGAAGCT-ATCAACAGATTT  1112