BAC Information

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BAC

Clone NameB6Ng01-009N04
Chromosome12 (Build37)1 (Build37)
Map Location 15,635,955 - 15,637,154133,968,552 - 133,969,073
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMap1lc3-ps7, LOC668492, LOC100042426
Downstream geneLOC217409, Trib2, LOC100043268, EG432636, LOC100043273, Lpin1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009N04.bB6Ng01-009N04.g
ACCDH845661DH845662
length1,174731
definitionDH845661|Mus musculus domesticus DNA, BAC clone: B6Ng01-009N04, 5' end.DH845662|Mus musculus domesticus DNA, BAC clone: B6Ng01-009N04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(15,635,955 - 15,637,154)(133,968,552 - 133,969,073)
sequence
gaattcagctctcttcaaatttctttaacattttctttcccatgatgaat
gagtttcccctgggaggagaaatgaacttgtttaaggtcttctttttctc
cagggtttttggttttgaattttaaatgtcatgctgctatttcgttctga
catgagagagtaggaagatttatgctgagccagcaagtcttcagagacca
tgctcctgaggaaggcacccaccttactgctcttgttaggcggagggcag
agaagcatcttaagttcacaggtacactctgactctgcagaccaccaact
gtgtgaactggttgagctatttatgtttcctatcatttttaggccactca
caactagagggataataaacgtattctgcaaggttgtcctgcagtttata
aattccatatttaatgatgctaaatattatgaatgaatacagggaattac
tgaaattggacatgatctagatcacttaggaatgcctttgaggaatgatc
tctttactaatgagggattatgttcaaatcctgccttgccaacaaggtca
gatagcctatttatattcctcatttgctgtctgtggtctgagaccacatt
tatttttaaaggcgagtaaactgggaggacactgaggatctccaggatgc
tttgctgctacatggtactcaacattatctgcacttctgacctggagtgt
cataaatgaggcccctctctcaaaaatacctgctatatgaagtaaaatta
tgtgtgctaaagaaagttgtttgattttttttaaccaaccactgtctaga
ttgtaaattttttttctttttgcaaatagcacagtcccatgaccttccag
aggtagtttcattagacatcccagaaaggattaggctagacaagtaccat
atgactgcatattttagagcctgaagtagataccactacaaagatgtgtt
ctgaacataagacagatagaggacataatgaagctcactgcaaggaaaga
agccagcatgttctttctgagaacttatcagagaagaaatgaaatcaatc
aaacagtctgggggtgcatgtagcagctgcacatgttcgtagatgtctaa
ctcttctggacaagcaggtgtgggaaaacattgatgaggaaaatcgaaat
tcactcagccgataaactagattc
gaattctctgtttagctctgtagaacatatttaattgggttatttgggtt
gttggtgtctaactttttgagttctttgtaaattttggatattagctctc
tgtcagatgtaggattgataacaattcttttccagtctgtaggctgccat
tttgtcttttgatagtgtccttaccttacagaagcttttcagatttatga
ggtcccatctatcatttgttgatcttagagcctgagtcattggtgttctg
ttcagaaaattttctcctgtaccaatttgttcaagggtatttaccacttt
cttttctatgagctttagtgtatctggctgtatgtcgagctccttcgtcc
acttggatttcagttttgtgcagggtgataaatatggttctattttcatt
cttctatttgcagacatccagtagaaaagcacgattcattgaagatgatt
tttttttaccattgtatggttttggcttttttatcaaaaatcaagtagcc
ataagtctgtgtttttatttctgtgtattcagttagattccattgaccaa
catgtctatttctgtatcaatatcatgcagttttaatcactatttcagct
tgaggtcagcttgaggtcagcttgaggtcagggatggtaattcctctaaa
agttcttttattgctcaggattgttttggttaccgtgtgtgtgtctgtgt
gtgtctgtgtgtctctgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_15635955_15637154
seq2: B6Ng01-009N04.b_46_1219 (reverse)

seq1  GAATGCTAGTTTTATTTGGGCTGAAGTTTGAATTCTGGATTTTCCCTCAA  50
      |||| ||||||   | | ||||||    |||||| | |||||| |||| |
seq2  GAAT-CTAGTT---TATCGGCTGA---GTGAATT-TCGATTTT-CCTC-A  40

seq1  TCAAAATGTTTCTCCCCACACCCTGGCTTGTTCCAGGAGAGTAAGACATC  100
      ||  ||||||  | ||||||||   ||||| ||||| ||||| |||||||
seq2  TC--AATGTT--TTCCCACACC--TGCTTG-TCCAGAAGAGTTAGACATC  83

seq1  TTACAGAAACATGTGCAGCTGGCTACATGCA-CCCCAGACTTGTTGTGAT  149
      |   |  ||||||||||||| |||||||||| |||||||| |||| ||| 
seq2  T---ACGAACATGTGCAGCT-GCTACATGCACCCCCAGAC-TGTT-TGA-  126

seq1  TTGATTTCATGTCTTCTCTGATAAGTTCTCAGAAAGAACATGCTGGCTTT  199
      |||||||||| |||||||||||||||||||||||||||||||||||| ||
seq2  TTGATTTCATTTCTTCTCTGATAAGTTCTCAGAAAGAACATGCTGGC-TT  175

seq1  CTTTCCTTGCAGTGAGCTTCATTATGTCCTCTATCTGTCTTATGTTCAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTGCAGTGAGCTTCATTATGTCCTCTATCTGTCTTATGTTCAGA  225

seq1  ACACATCTTTGTTAGTGGTATTCTACTTCAGGCTCTAAAATATGCAGTCA  299
      ||||||||||| |||||||| |||||||||||||||||||||||||||||
seq2  ACACATCTTTG-TAGTGGTA-TCTACTTCAGGCTCTAAAATATGCAGTCA  273

seq1  TATGGTACTTGTCTAGCCTAATCCTTTCTGGGATGTCTAATGAAACTACC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTACTTGTCTAGCCTAATCCTTTCTGGGATGTCTAATGAAACTACC  323

seq1  TCTGGAAGGTCATGGGACTGTGCTATTTGCAAAAAGAAAAAAAATTTACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAGGTCATGGGACTGTGCTATTTGCAAAAAGAAAAAAAATTTACA  373

seq1  ATCTAGACAGTGGTTGGTTAAAAAAAATCAAACAACTTTCTTTAGCACAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGACAGTGGTTGGTTAAAAAAAATCAAACAACTTTCTTTAGCACAC  423

seq1  ATAATTTTACTTCATATAGCAGGTATTTTTGAGAGAGGGGCCTCATTTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTACTTCATATAGCAGGTATTTTTGAGAGAGGGGCCTCATTTAT  473

seq1  GACACTCCAGGTCAGAAGTGCAGATAATGTTGAGTACCATGTAGCAGCAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTCCAGGTCAGAAGTGCAGATAATGTTGAGTACCATGTAGCAGCAA  523

seq1  AGCATCCTGGAGATCCTCAGTGTCCTCCCAGTTTACTCGCCTTTAAAAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCTGGAGATCCTCAGTGTCCTCCCAGTTTACTCGCCTTTAAAAAT  573

seq1  AAATGTGGTCTCAGACCACAGACAGCAAATGAGGAATATAAATAGGCTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGGTCTCAGACCACAGACAGCAAATGAGGAATATAAATAGGCTAT  623

seq1  CTGACCTTGTTGGCAAGGCAGGATTTGAACATAATCCCTCATTAGTAAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTTGTTGGCAAGGCAGGATTTGAACATAATCCCTCATTAGTAAAG  673

seq1  AGATCATTCCTCAAAGGCATTCCTAAGTGATCTAGATCATGTCCAATTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATTCCTCAAAGGCATTCCTAAGTGATCTAGATCATGTCCAATTTC  723

seq1  AGTAATTCCCTGTATTCATTCATAATATTTAGCATCATTAAATATGGAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTCCCTGTATTCATTCATAATATTTAGCATCATTAAATATGGAAT  773

seq1  TTATAAACTGCAGGACAACCTTGCAGAATACGTTTATTATCCCTCTAGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAACTGCAGGACAACCTTGCAGAATACGTTTATTATCCCTCTAGTT  823

seq1  GTGAGTGGCCTAAAAATGATAGGAAACATAAATAGCTCAACCAGTTCACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGGCCTAAAAATGATAGGAAACATAAATAGCTCAACCAGTTCACA  873

seq1  CAGTTGGTGGTCTGCAGAGTCAGAGTGTACCTGTGAACTTAAGATGCTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGTGGTCTGCAGAGTCAGAGTGTACCTGTGAACTTAAGATGCTTC  923

seq1  TCTGCCCTCCGCCTAACAAGAGCAGTAAGGTGGGTGCCTTCCTCAGGAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCTCCGCCTAACAAGAGCAGTAAGGTGGGTGCCTTCCTCAGGAGC  973

seq1  ATGGTCTCTGAAGACTTGCTGGCTCAGCATAAATCTTCCTACTCTCTCAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTCTGAAGACTTGCTGGCTCAGCATAAATCTTCCTACTCTCTCAT  1023

seq1  GTCAGAACGAAATAGCAGCATGACATTTAAAATTCAAAACCAAAAACCCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAACGAAATAGCAGCATGACATTTAAAATTCAAAACCAAAAACCCT  1073

seq1  GGAGAAAAAGAAGACCTTAAACAAGTTCATTTCTCCTCCCAGGGGAAACT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAAAGAAGACCTTAAACAAGTTCATTTCTCCTCCCAGGGGAAACT  1123

seq1  CATTCATCATGGGAAAGAAAATGTTAAAGAAATTTGAAGAGAGCTGAATT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATCATGGGAAAGAAAATGTTAAAGAAATTTGAAGAGAGCTGAATT  1173

seq1  C  1200
      |
seq2  C  1174

seq1: chr1_133968552_133969073
seq2: B6Ng01-009N04.g_753_799 (reverse)

seq1  CACACACACACAGATACACACACTCACATATACATACACATACTCACAGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  CACACATACACATACTCACACACATACATACACGTATATACATATACACA  100
                                                        
seq2  --------------------------------------------------  0

seq1  CACTCACACACATACACACATATTCTCATATACACACACAGACACACATA  150
                                                        
seq2  --------------------------------------------------  0

seq1  CTCACATATACATACACACTCACACACACATATGTACACATTCACACACA  200
                                                        
seq2  --------------------------------------------------  0

seq1  CACACAACATGTTTGCTTGAGCCGTTTGCAGGTGTAAAGTTCATTAGTCA  250
                                                        
seq2  --------------------------------------------------  0

seq1  TTTGTGAGATAGTTATAGCTGCTGTATCTAAGAAAAGACATTAATGCTTT  300
                                                        
seq2  --------------------------------------------------  0

seq1  CTGAGGTCTTGGCTTAGCTCAAGGCTCTCAGTCCCACACTCATAGACACA  350
                                                        
seq2  --------------------------------------------------  0

seq1  CAAATGCACACACACACTCATAGACACACACATATATACACACAGAGACA  400
                                                        
seq2  --------------------------------------------------  0

seq1  CACATACTCATATACACACATACACACATATACACACACAGAATACACTC  450
                                                        
seq2  --------------------------------------------------  0

seq1  ACAGACACACTCATACACACATACATACATACACACACATATACACATAC  500
                             || ||| ||||||||| | ||||  ||
seq2  -----------------------CACACACACACACACAGAGACAC--AC  25

seq1  AGACACACACAGACACACACAC  522
      ||||||||||||||||||||||
seq2  AGACACACACAGACACACACAC  47