BAC Information

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BAC

Clone NameB6Ng01-010D07
Chromosome12 (Build37)
Map Location 12,056,440 - 12,232,000
singlet/doubletdoublet
Overlap genenone
Upstream geneKcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6, Vsnl1, EG209550, LOC217390, LOC628327, LOC627110, LOC100043209
Downstream geneD12Ertd553e, LOC100043215, Mycn, EG668473, LOC628449, Ddx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010D07.bB6Ng01-010D07.g
ACCDH845939DH845940
length1,081258
definitionDH845939|Mus musculus domesticus DNA, BAC clone: B6Ng01-010D07, 5' end.DH845940|Mus musculus domesticus DNA, BAC clone: B6Ng01-010D07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,056,440 - 12,057,528)(12,231,743 - 12,232,000)
sequence
gaattcttacagttttcttagggttttttgctatttccagagcagatacc
agaaaaccttgattcttaatttatgaatgtgctgtgcatttttcctactg
acagatttggtgtcggggagggttggactcacataaacatgttgaaaaac
aggttttgacattcatctctgcaactgattgaggatcttgtgccttttct
caacgtgagttgtgaatgacatgggccttagatttatagtttctctagcc
ccctggtttcaactttcctaattctgacacccattaatacctcacgttga
ggtgacccccaaccacagaattattttttgcctctagttcatagctctaa
ttctgctactgttatatttaagtattcttgttctctgatggtcttaggtg
acccccagggcctcatgacccacaggttgagaattgcagctctacagcct
agtgaaaaggacacagtcagtcaactgcagctggcacttttttttctatc
ccaaggcatgtgcctgtgcactgtgtgcacacacagagtgattaaaccag
agttgcacacacatgatgagacagcagaaggaaaacaaggggaaagtgct
ggagaaacagttttgccaaagctcttatccctggcttttgggaagccagg
aagattaataaccagaatctccttcactggattcatgcccttacctccag
catactgaattcccttagcctcccacatgcctgggaagacatataccatc
aaggttaaaattaacattttctgaatgcataaagagctctttaaaattga
ctttgattttttaaagttatcaataagagaaaagacggcaacggattgag
atagacaattaacaaatatatcagtaaaatcagcaaatgactaggtctac
atgaattataatacaaataattattgcacatgtgtatactggaattgtcc
ctgtcattatcaaaaacaatatatttaaacagcattgagaaggcaaagta
gcagtacaaatagcatatactgaaaaagatagcttgaacgttttgctgat
gaaggaagatgaaagtctttcaaaaaataag
tgtatgtgttccatatctattggttataatacgatgccttgatatgtatt
tactggggtaggagggaataaaacaagctaactaataagagatctctttg
aatatgtcttttgtcacaaagacattgcaaatgaactgctagtatgttta
cagagttgagaagggcatctgtttgaggacatgctcttacaatttgttcc
cctcctttgtgtctgccacctccactacatttataacattggtgagtgtg
tgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_12056440_12057528
seq2: B6Ng01-010D07.b_46_1126

seq1  GAATTCTTACAGTTTTCTTAGGGTTTTTTGCTATTTCCAGAGCAGATACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACAGTTTTCTTAGGGTTTTTTGCTATTTCCAGAGCAGATACC  50

seq1  AGAAAACCTTGATTCTTAATTTATGAATGTGCTGTGCATTTTTCCTACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACCTTGATTCTTAATTTATGAATGTGCTGTGCATTTTTCCTACTG  100

seq1  ACAGATTTGGTGTCGGGGAGGGTTGGACTCACATAAACATGTTGAAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTTGGTGTCGGGGAGGGTTGGACTCACATAAACATGTTGAAAAAC  150

seq1  AGGTTTTGACATTCATCTCTGCAACTGATTGAGGATCTTGTGCCTTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTGACATTCATCTCTGCAACTGATTGAGGATCTTGTGCCTTTTCT  200

seq1  CAACGTGAGTTGTGAATGACATGGGCCTTAGATTTATAGTTTCTCTAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGTGAGTTGTGAATGACATGGGCCTTAGATTTATAGTTTCTCTAGCC  250

seq1  CCCTGGTTTCAACTTTCCTAATTCTGACACCCATTAATACCTCACGTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTTTCAACTTTCCTAATTCTGACACCCATTAATACCTCACGTTGA  300

seq1  GGTGACCCCCAACCACAGAATTATTTTTTGCCTCTAGTTCATAGCTCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCCCCAACCACAGAATTATTTTTTGCCTCTAGTTCATAGCTCTAA  350

seq1  TTCTGCTACTGTTATATTTAAGTATTCTTGTTCTCTGATGGTCTTAGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTACTGTTATATTTAAGTATTCTTGTTCTCTGATGGTCTTAGGTG  400

seq1  ACCCCCAGGGCCTCATGACCCACAGGTTGAGAATTGCAGCTCTACAGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCAGGGCCTCATGACCCACAGGTTGAGAATTGCAGCTCTACAGCCT  450

seq1  AGTGAAAAGGACACAGTCAGTCAACTGCAGCTGGCACTTTTTTTTCTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAAGGACACAGTCAGTCAACTGCAGCTGGCACTTTTTTTTCTATC  500

seq1  CCAAGGCATGTGCCTGTGCACTGTGTGCACACACAGAGTGATTAAACCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCATGTGCCTGTGCACTGTGTGCACACACAGAGTGATTAAACCAG  550

seq1  AGTTGCACACACATGATGAGACAGCAGAAGGAAAACAAGGGGAAAGTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCACACACATGATGAGACAGCAGAAGGAAAACAAGGGGAAAGTGCT  600

seq1  GGAGAAACAGTTTTGCCAAAGCTCTTATCCCTGGCTTTTGGGAAGCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAACAGTTTTGCCAAAGCTCTTATCCCTGGCTTTTGGGAAGCCAGG  650

seq1  AAGATTAATAACCAGAATCTCCTTCACTGGATTCATGCCCTTACCTCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTAATAACCAGAATCTCCTTCACTGGATTCATGCCCTTACCTCCAG  700

seq1  CATACTGAATTCCCTTAGCCTCCCACATGCCTGGGAAGACATATACCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGAATTCCCTTAGCCTCCCACATGCCTGGGAAGACATATACCATC  750

seq1  AAGGTTAAAATTAACATTTTCTGAATGCATAAAGAGCTCTTTAAAATTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTAAAATTAACATTTTCTGAATGCATAAAGAGCTCTTTAAAATTGA  800

seq1  CTTTGATTTTTTAAAGTTATCAATAAGAGAAAAGACGGCAACGGATTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATTTTTTAAAGTTATCAATAAGAGAAAAGACGGCAACGGATTGAG  850

seq1  ATAGACAATTAACAAATATATCAGTAAAATCAGCAAATGACTAGGTCTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAATTAACAAATATATCAGTAAAATCAGCAAATGACTAGGTCTAC  900

seq1  ATGAATTATAATACAAAATAATTATTGCACATGTGTTATACTGGAATTGT  950
      |||||||||||||| |||||||||||||||||||| ||||||||||||||
seq2  ATGAATTATAATAC-AAATAATTATTGCACATGTG-TATACTGGAATTGT  948

seq1  CCCTGTTCATTATCAAAACACATATATTTAAACAGCATTGAGAAGGGCAA  1000
      ||||| ||||||||||||   ||||||||||||||||||||||| |||||
seq2  CCCTG-TCATTATCAAAAACAATATATTTAAACAGCATTGAGAA-GGCAA  996

seq1  AGTAGCAGTACAAATAGCATATACTGAGATAGATAGCTTGGAACGTTTGT  1050
      ||||||||||||||||||||||||||| | ||||||||| |||||||| |
seq2  AGTAGCAGTACAAATAGCATATACTGAAAAAGATAGCTT-GAACGTTT-T  1044

seq1  GCTGATGAAGGAAGATTGAAAAGTCTTTCAAAAAATAAG  1089
      ||||||||||||||||   ||||||||||||||||||||
seq2  GCTGATGAAGGAAGAT--GAAAGTCTTTCAAAAAATAAG  1081

seq1: chr12_12231743_12232000
seq2: B6Ng01-010D07.g_71_328 (reverse)

seq1  CACACACACACACTCACCAATGTTATAAATGTAGTGGAGGTGGCAGACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACTCACCAATGTTATAAATGTAGTGGAGGTGGCAGACAC  50

seq1  AAAGGAGGGGAACAAATTGTAAGAGCATGTCCTCAAACAGATGCCCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGGGGAACAAATTGTAAGAGCATGTCCTCAAACAGATGCCCTTCT  100

seq1  CAACTCTGTAAACATACTAGCAGTTCATTTGCAATGTCTTTGTGACAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTGTAAACATACTAGCAGTTCATTTGCAATGTCTTTGTGACAAAA  150

seq1  GACATATTCAAAGAGATCTCTTATTAGTTAGCTTGTTTTATTCCCTCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATTCAAAGAGATCTCTTATTAGTTAGCTTGTTTTATTCCCTCCTA  200

seq1  CCCCAGTAAATACATATCAAGGCATCGTATTATAACCAATAGATATGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTAAATACATATCAAGGCATCGTATTATAACCAATAGATATGGAA  250

seq1  CACATACA  258
      ||||||||
seq2  CACATACA  258