BAC Information

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BAC

Clone NameB6Ng01-010I10
Chromosome12 (Build37)
Map Location 71,265,398 - 71,428,145
singlet/doubletdoublet
Overlap geneGm804, Pygl, Trim9
Upstream genePpil5, Rpl36al, Mgat2, 1110034A24Rik, 9330151L19Rik, Pole2, Klhdc1, Klhdc2, Sdccag1, Arf6, LOC100040856, LOC100040862, Gm71, Sos2, LOC100040879, L2hgdh, Atp5s, Cdkl1, Map4k5, Spg3a, EG622339, Sav1, LOC100040999, Nin, ENSMUSG00000056391
Downstream geneTxndc1, LOC100040965, LOC100041061, Frmd6, Actr10, Psma3, 3110056K07Rik, Arid4a, Timm9, LOC100041035, 2700049A03Rik, LOC666162, Dact1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010I10.bB6Ng01-010I10.g
ACCDH846171DH846172
length1,0481,121
definitionDH846171|Mus musculus domesticus DNA, BAC clone: B6Ng01-010I10, 5' end.DH846172|Mus musculus domesticus DNA, BAC clone: B6Ng01-010I10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,265,398 - 71,266,465)(71,427,009 - 71,428,145)
sequence
gaattccactctaacatatttattcatgcctcagtctctgtggtccctgt
ctggcactgtcacagagctggcctcccaaaagcctgttgtcctttgatgt
gttgtcaaagccttccctggcccagactattatcagttgagaactgcagg
acagctctacctgggggaggagcagctctgcctaggggaggagcagggta
gcacaaacccaggatctccctcgaatctgtgggggtagggctcaaaccca
gtgatgggctcagggaacctgcccactggctacctcgcctgtgcctcttt
gtctgtcatgtcctgtcaggtgatgatggctttctcaagtcttgccttct
ctctgtctgtttcagaatcacattccctgagatttctcagtgaagctgag
cagtggtcagccttgtttaacattgttctgatttatgaagttggacagtg
ctccagtagggtttatttaaaggatcagtagaccatactgccatgcctat
gccttggtgtggatctgaaattgtactcaattgattcagattcaccaggc
gcaccatcctcagcctttgccctgcagtctcagctcacagccagcagtgt
cctgagcactgagcaccagtccccaaacaggaagtcccgggagatttgtt
aaagcacccaaatgagcatatttagacatgggaaaatctggtaaagttgt
atataaaatttgaagtgtggcttcgtattgtttctagggaatgggtttat
tgctttaactagatgctctgggaactccatagctcactcacagaacaact
ttggctctaagcaattttttttttttttcttaaagggattcctgccttct
ggctaattctttgcttgtttgtcaaggttgagagtggacgctgcattttg
ggggtttcttgtattcccaccggacatctttttctattcttttgtacttt
gtggctgagtaatggggttagacaactggagttgggtgcaggtctgaatg
ctcttccaacttcttagctgacaagaactcttagggtaagttctgctg
gaattctttccaagaatccctgactcacataagccaatgggtttgctaaa
aattcatcccataacttcaggaagaacaacaaaaatggcaaaaaggacag
gcaggagcaagcccaacagggtgttcctggagtgtaagtccctaaaccct
ttgtgtagactggagtaggttttaaatgcataagagacacagtttcagtg
tgaagacctgtttgctgtatgttttcatatataagtgtacatttcatata
tgaataatatataaattcattaccttgaacccaagatatcaacatattaa
caacaaatttataaatgtttttccataggaagaaagaaatggaggagctc
tcagttggaggcaagggtcattagaatctagacacacattgatgtgtctt
ggagtctcttagataaaattgcctgctgctggctgctggtgtctttgtgc
agacccttcacatctgcagtgtttcaagtttctcagtggggggtttcaac
tcttggggatcaaaggatgacaggtcctttcccattccccttttcttacc
aggccttggaagtcttcgagggctttacagccctgttgggcccttgttag
agggaagagaaaagaaaagtcacaaaggcagtccaatgtggggaggagac
ctcatgctgactgcctttgaacttgattcccattccttctagaataacaa
cccgcaggcagatcagtattgaccccaaaagccctgttctataaaccata
ccctttgtcttttccttacaaggaaaggcaaggaggggattgcaaggctg
tttttgattatttaattcataaaataagacgtgaagaattaaaacaaagg
agtatataagtgttggccttctcactctgagaagggattgtcaggactga
gctgggtgtgatcttggtccggagttcttacctcccagtagagccacaca
gttcagtgctaagcttcggtattgatatcatttgtggtgtttgggtctca
ttgagcggccaatgccgttgcctgtggttgtgccatcagtctagtgttca
ggcccttgccttgccgttgtcagtgtcagagctgaaaacctttaactctg
gcagtgccttggcgggcctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_71265398_71266465
seq2: B6Ng01-010I10.b_46_1093

seq1  GAATTCCACTCTAACATATTTATTCATGCCTCAGTCTCTGTGGTCCCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTCTAACATATTTATTCATGCCTCAGTCTCTGTGGTCCCTGT  50

seq1  CTGGCACTGTCACAGAGCTGGCCTCCCAAAAGCCTGTTGTCCTTTGATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACTGTCACAGAGCTGGCCTCCCAAAAGCCTGTTGTCCTTTGATGT  100

seq1  GTTGTCAAAGCCTTCCCTGGCCCAGACTATTATCAGTTGAGAACTGCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCAAAGCCTTCCCTGGCCCAGACTATTATCAGTTGAGAACTGCAGG  150

seq1  ACAGCTCTACCTGGGGGAGGAGCAGCTCTGCCTAGGGGAGGAGCAGGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCTACCTGGGGGAGGAGCAGCTCTGCCTAGGGGAGGAGCAGGGTA  200

seq1  GCACAAACCCAGGATCTCCCTCGAATCTGTGGGGGTAGGGCTCAAACCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAACCCAGGATCTCCCTCGAATCTGTGGGGGTAGGGCTCAAACCCA  250

seq1  GTGATGGGCTCAGGGAACCTGCCCACTGGCTACCTCGCCTGTGCCTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGGCTCAGGGAACCTGCCCACTGGCTACCTCGCCTGTGCCTCTTT  300

seq1  GTCTGTCATGTCCTGTCAGGTGATGATGGCTTTCTCAAGTCTTGCCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCATGTCCTGTCAGGTGATGATGGCTTTCTCAAGTCTTGCCTTCT  350

seq1  CTCTGTCTGTTTCAGAATCACATTCCCTGAGATTTCTCAGTGAAGCTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTGTTTCAGAATCACATTCCCTGAGATTTCTCAGTGAAGCTGAG  400

seq1  CAGTGGTCAGCCTTGTTTAACATTGTTCTGATTTATGAAGTTGGACAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTCAGCCTTGTTTAACATTGTTCTGATTTATGAAGTTGGACAGTG  450

seq1  CTCCAGTAGGGTTTATTTAAAGGATCAGTAGACCATACTGCCATGCCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTAGGGTTTATTTAAAGGATCAGTAGACCATACTGCCATGCCTAT  500

seq1  GCCTTGGTGTGGATCTGAAATTGTACTCAATTGATTCAGATTCACCAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGTGTGGATCTGAAATTGTACTCAATTGATTCAGATTCACCAGGC  550

seq1  GCACCATCCTCAGCCTTTGCCCTGCAGTCTCAGCTCACAGCCAGCAGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATCCTCAGCCTTTGCCCTGCAGTCTCAGCTCACAGCCAGCAGTGT  600

seq1  CCTGAGCACTGAGCACCAGTCCCCAAACAGGAAGTCCCGGGAGATTTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCACTGAGCACCAGTCCCCAAACAGGAAGTCCCGGGAGATTTGTT  650

seq1  AAAGCACCCAAATGAGCATATTTAGACATGGGAAAATCTGGTAAAGTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACCCAAATGAGCATATTTAGACATGGGAAAATCTGGTAAAGTTGT  700

seq1  ATATAAAATTTGAAGTGTGGCTTCGTATTGTTTCTAGGGAATGGGTTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAATTTGAAGTGTGGCTTCGTATTGTTTCTAGGGAATGGGTTTAT  750

seq1  TGCTTTAACTAGATGCTCTGGGAACTCCATAGCTCACTCACAGAACAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAACTAGATGCTCTGGGAACTCCATAGCTCACTCACAGAACAACT  800

seq1  TTGGCTCTAAGGCAATTTTTTTTTTTTTTCTTAAAGGGATTTCCTGCCTT  850
      |||||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  TTGGCTCTAA-GCAATTTTTTTTTTTTTTCTTAAAGGGA-TTCCTGCCTT  848

seq1  CTGGCTAATTCTTTGCTTTGTTTTGTCAAGGTTGAGAGTGGACGCTGCAT  900
      ||||||||||||||||||   |||||||||||||||||||||||||||||
seq2  CTGGCTAATTCTTTGCTT--GTTTGTCAAGGTTGAGAGTGGACGCTGCAT  896

seq1  TTTGGGGGTATCTTGTATTCCCAACGGCACATCTTTTTCTATTTCTTTTT  950
      ||||||||| ||||||||||||| ||| |||||||||||||||   ||||
seq2  TTTGGGGGTTTCTTGTATTCCCACCGG-ACATCTTTTTCTATT--CTTTT  943

seq1  GTACTTTGTGGCTGAGTTAATGGGGTTTAGACAAACTGGAGTTGAGTGCA  1000
      |||||||||||||||| |||||||| |||||| ||||||||||| |||||
seq2  GTACTTTGTGGCTGAG-TAATGGGG-TTAGAC-AACTGGAGTTGGGTGCA  990

seq1  GGTTCTGAATTGCTCTTCCCAAACTTTCCTTTAGCTGACAGAGAACACTT  1050
      || |||||| |||||||||  |||||    |||||||||| ||||| |||
seq2  GG-TCTGAA-TGCTCTTCC--AACTT---CTTAGCTGACA-AGAACTCTT  1032

seq1  AGGGGTTAAGTTCTGCTG  1068
      ||||  ||||||||||||
seq2  AGGG--TAAGTTCTGCTG  1048

seq1: chr12_71427009_71428145
seq2: B6Ng01-010I10.g_66_1186 (reverse)

seq1  TGAGGCCAGCCAAGGCACATGCCAGGAGTCAAGGTGTTTTCAGCCCTGAA  50
      ||||||| |||||||||| ||||| |||| || | ||||||||| |||| 
seq2  TGAGGCCCGCCAAGGCAC-TGCCA-GAGTTAAAG-GTTTTCAGCTCTGAC  47

seq1  CATGACCAACGGGCAAGGGCAAGGGCCCTGAACACAAAGACTGAAGGCAA  100
        ||| |||| ||||| |||||||| |||||||||  ||||||| ||| |
seq2  ACTGA-CAAC-GGCAA-GGCAAGGG-CCTGAACAC-TAGACTGATGGC-A  91

seq1  CAACCACAAGCAACGGCATTTGGCCGCTACAATGAGACCCAAACA-CACA  149
      |||||||| ||||||||| ||||||||| |||||||||||||||| ||||
seq2  CAACCACAGGCAACGGCA-TTGGCCGCT-CAATGAGACCCAAACACCACA  139

seq1  AATGAATATCAAATACCGAAGCTTAGCACTGAACTGTGTGGCTCTTACTG  199
      |||| ||||| ||||||||||||||||||||||||||||||||| |||||
seq2  AATG-ATATC-AATACCGAAGCTTAGCACTGAACTGTGTGGCTC-TACTG  186

seq1  GGAGGTGAAGAACTCCGGACCAGGTTCACACCCAGCTCAGTCCTGACAAA  249
      |||||| ||||||||||||||| | |||||||||||||||||||||| ||
seq2  GGAGGT-AAGAACTCCGGACCAAGATCACACCCAGCTCAGTCCTGAC-AA  234

seq1  TCCCTTCTCAGAGTGAGAAGGCCAACACTTATATACTCCTTTTGTTTTAA  299
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCCCTTCTCAGAGTGAGAAGGCCAACACTTATATACTCC-TTTGTTTTAA  283

seq1  TTCTTCACGTCTTATTTTATGAATTAAATAATCAAAAACAGCCTTGCAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCACGTCTTATTTTATGAATTAAATAATCAAAAACAGCCTTGCAAT  333

seq1  CCCCTCCTTGCCTTTCCTTGTAAGGAAAAGACAAAGGGTATGGTTTATAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCTTGCCTTTCCTTGTAAGGAAAAGACAAAGGGTATGGTTTATAG  383

seq1  AACAGGGCTTTTGGGGTCAATACTGATCTGCCTGCGGGTTGTTATTCTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGCTTTTGGGGTCAATACTGATCTGCCTGCGGGTTGTTATTCTAG  433

seq1  AAGGAATGGGAATCAAGTTCAAAGGCAGTCAGCATGAGGTCTCCTCCCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATGGGAATCAAGTTCAAAGGCAGTCAGCATGAGGTCTCCTCCCCA  483

seq1  CATTGGACTGCCTTTGTGACTTTTCTTTTCTCTTCCCTCTAACAAGGGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGACTGCCTTTGTGACTTTTCTTTTCTCTTCCCTCTAACAAGGGCC  533

seq1  CAACAGGGCTGTAAAGCCCTCGAAGACTTCCAAGGCCTGGTAAGAAAAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGGCTGTAAAGCCCTCGAAGACTTCCAAGGCCTGGTAAGAAAAGG  583

seq1  GGAATGGGAAAGGACCTGTCATCCTTTGATCCCCAAGAGTTGAAACCCCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGGAAAGGACCTGTCATCCTTTGATCCCCAAGAGTTGAAACCCCC  633

seq1  CACTGAGAAACTTGAAACACTGCAGATGTGAAGGGTCTGCACAAAGACAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGAAACTTGAAACACTGCAGATGTGAAGGGTCTGCACAAAGACAC  683

seq1  CAGCAGCCAGCAGCAGGCAATTTTATCTAAGAGACTCCAAGACACATCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCCAGCAGCAGGCAATTTTATCTAAGAGACTCCAAGACACATCAA  733

seq1  TGTGTGTCTAGATTCTAATGACCCTTGCCTCCAACTGAGAGCTCCTCCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCTAGATTCTAATGACCCTTGCCTCCAACTGAGAGCTCCTCCAT  783

seq1  TTCTTTCTTCCTATGGAAAAACATTTATAAATTTGTTGTTAATATGTTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTCCTATGGAAAAACATTTATAAATTTGTTGTTAATATGTTGA  833

seq1  TATCTTGGGTTCAAGGTAATGAATTTATATATTATTCATATATGAAATGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGGGTTCAAGGTAATGAATTTATATATTATTCATATATGAAATGT  883

seq1  ACACTTATATATGAAAACATACAGCAAACAGGTCTTCACACTGAAACTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTATATATGAAAACATACAGCAAACAGGTCTTCACACTGAAACTGT  933

seq1  GTCTCTTATGCATTTAAAACCTACTCCAGTCTACACAAAGGGTTTAGGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTATGCATTTAAAACCTACTCCAGTCTACACAAAGGGTTTAGGGA  983

seq1  CTTACACTCCAGGAACACCCTGTTGGGCTTGCTCCTGCCTGTCCTTTTTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACTCCAGGAACACCCTGTTGGGCTTGCTCCTGCCTGTCCTTTTTG  1033

seq1  CCATTTTTGTTGTTCTTCCTGAAGTTATGGGATGAATTTTTAGCAAACCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTTGTTGTTCTTCCTGAAGTTATGGGATGAATTTTTAGCAAACCC  1083

seq1  ATTGGCTTATGTGAGTCAGGGATTCTTGGAAAGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTTATGTGAGTCAGGGATTCTTGGAAAGAATTC  1121