BAC Information

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BAC

Clone NameB6Ng01-010O14
Chromosome12 (Build37)
Map Location 57,613,937 - 57,785,650
singlet/doubletdoublet
Overlap geneTitf1, LOC100039993, Nkx2-9
Upstream geneAldoa-ps1, Insm2, Garnl1, Brms1l, LOC100039915, LOC382600, LOC382601, Mbip, EG621837, E030019B13Rik
Downstream genePax9, Slc25a21, AU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010O14.bB6Ng01-010O14.g
ACCDH846444DH846445
length6791,125
definitionDH846444|Mus musculus domesticus DNA, BAC clone: B6Ng01-010O14, 5' end.DH846445|Mus musculus domesticus DNA, BAC clone: B6Ng01-010O14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,784,973 - 57,785,650)(57,613,937 - 57,615,073)
sequence
gaattcaaacctagggtcccatacataatagtcaaaagctctaccactga
gctgcatctccagtctctgatgtatgtatgtctaagcctgacaaaaatac
catacccagtccagaggctatttggtttgccagcttcctctcctcccact
cctggaagctgatgctaacctgaagaaacacaacctctttcttgatgcaa
ggcaacacttggacctatgcacatggaatagaaaatggtaactcaggtgc
atctaccagctctttgtgagcatgtgtgtgtgtgtctctctctctctctg
tgtatgtgtgtgtgagtgtgtctctctctgtgtgcaagtgtgtgtatgtg
tgagtctctctttgtgaatgtgtgtgtgcgcgcgcgcgcgcgcgcgtgtg
tgtgtgtgtgtgtgtgtgtgcaactgtgtgtgtgtgtgttgggccctggg
aaagcctttccaaggcttcctcctatatctctctctccttttgattccct
ttctgtgaggtgctgcctttctctgccaagcacatgctcgctcaccattc
tgaagaagaaagtagaattttgcatgagagtttgattttttttaagttgt
tcttttctggtttaaagtccatgaaaatccccaaaatattttaaggcaca
ccaggaaactaagcataacattatcaaga
gaattcaactgtgtcgtggagtgtaatgagtcaaacattttctccccacc
cttctttctacagaactgtgggaaatgtagactatggagatcagatgttg
cactggtgtgaaaggtgttgcaaagcatcgccttgattggttctaattaa
ctgtgatgctcttgttttcccagttttcgtcggggacccactacacaatg
ccttttatctggctttcaatagatttttacttaataacagctgatcacta
tatatgcagcctttggctattttattttctaagagtttcttgaatatttt
atttctgttttaaaagataaatttgaagacatttctataccttaaaaaaa
gtaataaatgttaacggtccttatgagtgtattttgcatatttgcatttg
gtgactatattctcaagccacgtttcagttccgctttaaagactgcatat
atgggcaaatgaaaagttctaaaagacagtcaggaactgttttttgtttt
ctttacttttcaaagtcagactaactaaacagaacagagccaaaacatag
aacttgcatggattctttgcaatgggaaagattccagaatttaaaatatt
aaatgaaattatttgcactcacctttctgatgacgtaagctgaaacagcc
ctgatagagatgtcatgaattttcatcaacttcacacatgttgtgcattc
aaaaacattttttttatttgccccgggggccccctgcatgtctctgaggc
atagtaatggttctgatgcaatgtcttgtaggtacaaaccccatgaagct
ccaagagtgctaggagatatatgactaaggtaaacagcctttaatcaaga
gaggggggcagaggcattaaataacagaagtttccaaagacatacacgtg
ctaaaatgaggagctgtattagaagcttcgtactttttgccatcgtactg
ctatatttggtatgctactaccctttcgagactgagtcaaacggatcatc
tgtactgacattatagctaatgtccattatcttggatagacgtagaaagt
gactaatacaccctcctgtatttgttcactcgcggatacagatggatcat
gggcagtgagattcagtccacactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_57784973_57785650
seq2: B6Ng01-010O14.b_43_721 (reverse)

seq1  TCTTGATAATGTTATGCTTAGTTTCCTGGTGTGCCTTAAAATATTTTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATAATGTTATGCTTAGTTTCCTGGTGTGCCTTAAAATATTTTGGG  50

seq1  GA-TTTCATGGACTTTAAACCAGAAAAGAACAACTTAAAAAAAATCAAAC  99
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCATGGACTTTAAACCAGAAAAGAACAACTTAAAAAAAATCAAAC  100

seq1  TCTCATGCAAAATTCTACTTTCTTCTTCAGAATGGTGAGCGAGCATGTGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGCAAAATTCTACTTTCTTCTTCAGAATGGTGAGCGAGCATGTGC  150

seq1  TTGGCAGAGAAAGGCAGCACCTCACAGAAAGGGAATCAAAAGGAGAGAGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGAGAAAGGCAGCACCTCACAGAAAGGGAATCAAAAGGAGAGAGA  200

seq1  GATATAGGAGGAAGCCTTGGAAAGGCTTTCCCAGGGCCCAACACACACAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAGGAGGAAGCCTTGGAAAGGCTTTCCCAGGGCCCAACACACACAC  250

seq1  ACACAGTTGCACACACACACACACACACACACACGCGCGCGCGCGCGCGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTTGCACACACACACACACACACACACACGCGCGCGCGCGCGCGC  300

seq1  GCACACACACATTCACAAAGAGAGACTCACACATACACACACTTGCACAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACACATTCACAAAGAGAGACTCACACATACACACACTTGCACAC  350

seq1  AGAGAGAGACACACTCACACACACATACACAGAGAGAGAGAGAGACACAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGACACACTCACACACACATACACAGAGAGAGAGAGAGACACAC  400

seq1  ACACACATGCTCACAAAGAGCTGGTAGATGCACCTGAGTTACCATTTTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATGCTCACAAAGAGCTGGTAGATGCACCTGAGTTACCATTTTCT  450

seq1  ATTCCATGTGCATAGGTCCAAGTGTTGCCTTGCATCAAGAAAGAGGTTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATGTGCATAGGTCCAAGTGTTGCCTTGCATCAAGAAAGAGGTTGT  500

seq1  GTTTCTTCAGGTTAGCATCAGCTTCCAGGAGTGGGAGGAGAGGAAGCTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTCAGGTTAGCATCAGCTTCCAGGAGTGGGAGGAGAGGAAGCTGG  550

seq1  CAAACCAAATAGCCTCTGGACTGGGTATGGTATTTTTGTCAGGCTTAGAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAAATAGCCTCTGGACTGGGTATGGTATTTTTGTCAGGCTTAGAC  600

seq1  ATACATACATCAGAGACTGGAGATGCAGCTCAGTGGTAGAGCTTTTGACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACATCAGAGACTGGAGATGCAGCTCAGTGGTAGAGCTTTTGACT  650

seq1  ATTATGTATGGGACCCTAGGTTTGAATTC  678
      |||||||||||||||||||||||||||||
seq2  ATTATGTATGGGACCCTAGGTTTGAATTC  679

seq1: chr12_57613937_57615073
seq2: B6Ng01-010O14.g_69_1193

seq1  GAATTCAACTGTGTCGTGGAGTGTAATGAGTCAAACATTTTCTCCCCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTGTGTCGTGGAGTGTAATGAGTCAAACATTTTCTCCCCACC  50

seq1  CTTCTTTCTACAGAACTGTGGGAAATGTAGACTATGGAGATCAGATGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCTACAGAACTGTGGGAAATGTAGACTATGGAGATCAGATGTTG  100

seq1  CACTGGTGTGAAAGGTGTTGCAAAGCATCGCCTTGATTGGTTCTAATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTGTGAAAGGTGTTGCAAAGCATCGCCTTGATTGGTTCTAATTAA  150

seq1  CTGTGATGCTCTTGTTTTCCCAGTTTTCGTCGGGGACCCACTACACAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATGCTCTTGTTTTCCCAGTTTTCGTCGGGGACCCACTACACAATG  200

seq1  CCTTTTATCTGGCTTTCAATAGATTTTTACTTAATAACAGCTGATCACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTATCTGGCTTTCAATAGATTTTTACTTAATAACAGCTGATCACTA  250

seq1  TATATGCAGCCTTTGGCTATTTTATTTTCTAAGAGTTTCTTGAATATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCAGCCTTTGGCTATTTTATTTTCTAAGAGTTTCTTGAATATTTT  300

seq1  ATTTCTGTTTTAAAAGATAAATTTGAAGACATTTCTATACCTTAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTTTTAAAAGATAAATTTGAAGACATTTCTATACCTTAAAAAAA  350

seq1  GTAATAAATGTTAACGGTCCTTATGAGTGTATTTTGCATATTTGCATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAAATGTTAACGGTCCTTATGAGTGTATTTTGCATATTTGCATTTG  400

seq1  GTGACTATATTCTCAAGCCACGTTTCAGTTCCGCTTTAAAGACTGCATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTATATTCTCAAGCCACGTTTCAGTTCCGCTTTAAAGACTGCATAT  450

seq1  ATGGGCAAATGAAAAGTTCTAAAAGACAGTCAGGAACTGTTTTTTGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCAAATGAAAAGTTCTAAAAGACAGTCAGGAACTGTTTTTTGTTTT  500

seq1  CTTTACTTTTCAAAGTCAGACTAACTAAACAGAACAGAGCCAAAACATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTTTTCAAAGTCAGACTAACTAAACAGAACAGAGCCAAAACATAG  550

seq1  AACTTGCATGGATTCTTTGCAATGGGAAAGATTCCAGAATTTAAAATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCATGGATTCTTTGCAATGGGAAAGATTCCAGAATTTAAAATATT  600

seq1  AAATGAAATTATTTGCACTCACCTTTCTGATGACGTAAGCTGAAACAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAATTATTTGCACTCACCTTTCTGATGACGTAAGCTGAAACAGCC  650

seq1  CTGATAGAGATGTCATGAATTTTCATCAACTTCACACATGTTGTGCATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGAGATGTCATGAATTTTCATCAACTTCACACATGTTGTGCATTC  700

seq1  AAAAACATTTTTTTTATTTGCCCC-GGGGCCCCCTGCATGTCTCTGAGGC  749
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAAAACATTTTTTTTATTTGCCCCGGGGGCCCCCTGCATGTCTCTGAGGC  750

seq1  ATAGTAATGGTTCTGATGCAATGTCTTGTAGGTACAAACCCCATGAAGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAATGGTTCTGATGCAATGTCTTGTAGGTACAAACCCCATGAAGCT  800

seq1  CCAAGAGTGCTAGGAGATATATGACTAAGGTAAACAGCCTTTAATCAAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGTGCTAGGAGATATATGACTAAGGTAAACAGCCTTTAATCAAGA  850

seq1  GAGGGGGGCAGAGGCATTAAATAACAGGAAGTTTCCAAAGACATACACGT  899
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAGGGGGGCAGAGGCATTAAATAACA-GAAGTTTCCAAAGACATACACGT  899

seq1  GCTAAAATGAGGAGCTGTTATTAGAAGCTTCGTACTTTTTGCCATCGTAA  949
      ||||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  GCTAAAATGAGGAGCTG-TATTAGAAGCTTCGTACTTTTTGCCATCGT-A  947

seq1  CTGCTATAATTTGGTATGCTACTACCCTTTCTGAGACCTGAGTCAAACAG  999
      ||||||| ||||||||||||||||||||||| |||| ||||||||||| |
seq2  CTGCTAT-ATTTGGTATGCTACTACCCTTTC-GAGA-CTGAGTCAAAC-G  993

seq1  AATCATCTTGTACTGGAACATTATAGCTTAAATTGTCCATTTATC-TGAG  1048
       |||||| |||||||  |||||||||||   | |||||| ||||| ||  
seq2  GATCATC-TGTACTG--ACATTATAGCT---AATGTCCA-TTATCTTGGA  1036

seq1  TAGACGTAGAAAGTGACTAAATAC-CACTCCTGTATTTGTTCATCTGCGG  1097
      |||||||||||||||||| ||||| | ||||||||||||||||   ||||
seq2  TAGACGTAGAAAGTGACT-AATACACCCTCCTGTATTTGTTCACTCGCGG  1085

seq1  ATACAGTATGATCATGGGGCAGTGAG--TCAGTCCACCACTC  1137
      ||||||   |||||| ||||||||||  |||||||| |||||
seq2  ATACAGATGGATCAT-GGGCAGTGAGATTCAGTCCA-CACTC  1125