BAC Information

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BAC

Clone NameB6Ng01-010P16
Chromosome12 (Build37)
Map Location 66,109,866 - 66,256,184
singlet/doubletdoublet
Overlap geneA430041B07Rik, Prpf39, Fkbp3, Fancm, C79407
Upstream geneEG623046, LOC623123, LOC217645, LOC217647, Gm527, Klhl28
Downstream geneWdr20b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010P16.bB6Ng01-010P16.g
ACCDH846492DH846493
length1,0961,102
definitionDH846492|Mus musculus domesticus DNA, BAC clone: B6Ng01-010P16, 5' end.DH846493|Mus musculus domesticus DNA, BAC clone: B6Ng01-010P16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,109,866 - 66,110,976)(66,255,084 - 66,256,184)
sequence
gaattcaagtcacccatttggaaggtcagtgcctttacccacactaaaga
tttagaaatacggctttagaaggtggagatttttaaaaagaaagaaacat
ttttttctgaatggaaaaatgattgatattgggggagagtcctatttacc
aagtgtaagtgatactgaacaaacacatagtgaattctccaaatttacac
atgccagtttataattcttagtaagattttaagtcattgagtgacacaag
actaaaatgagcagaaaagtggcagaactttattgtgggcaaaagtcaca
aaaattttgggaaaatttacgtgtttaaagcaattagagggttggaaaga
tggctcagcggttaagagcactgaccgctcttctgaaggtcctgagttca
aatcccagcaaccacatggtggctcacaaccatctgtaatgagatctgac
gccctcttctgcggtgtctgaagacagtgacagtgtacttacatataata
aataaaaatcaaagaggtacacatgtcaagtataggagtaatgtttaacc
acataatagcaacagaaaataaagtatttatgcttacaatattttataaa
tttctgatgaatattacttgaacaagtctaggaaggttaataacaatcag
caagagaaggctagctaatatttatagcatggtacatatagtggtgctgg
actctctctgagtctccagctcaaagacacagagaccttttattaatatg
aataccttaggcctttgtttaggcttcttcccaaccagctctaaacttaa
attaacctgtttattttaatctgtgttctgccatatggctcctgaactct
cctcagtttcttatgtccaactttctccaagtgtggctggagactctccc
aaatctgactgtttcccagagttcctatttttcctgggtgttccacctag
tctcctgccctgctataggctgtcagctctttattaaacccatcacctta
gattagtcactttatcagagagatatcttaagaaaatgatgtagatgctg
ctcatacagagtgcacagatagtttccagcataacagaagtttatt
gaattctgtactggttagtcctcagatgttttgtaattagattaataatg
ctgttattgttgtgatagctaagagtacagaatgaatacttcctttttga
agtggagagtgacatcaagattgcatctcactatgaagccctcgttggca
tggaacttagtatgtagaacaagctggtctcaaacctagagcactcctcc
tgcttttatatacaaggtgttgagattacacataactggctcacacccag
tccttcattataagtttgtatgcttctatgtgtatatacagttcctagta
aagtataaatactttgaccttattaaacttattcttttccccccctagag
atatgactgatgtttattggcatagcaatgtaattatagagcggattaaa
cacaatgaacttaggaccttatcaggcaacatttatatcttaaaaggatt
gatagactcggtctccatgaaagaagcaggtaagtgggcatcattattag
ttaaatctttctatagcctctcctctttcctaaataaatcccaggatcat
aaattgacccgaccccttgtagtgtcccacacaatcacgacttttattac
tcatttcagtatatgcctagtactgactcttcattacagttcagctttgc
ttgtcttatttcacaaacaaaccagctctctgtcacaaggcttttcattt
cctatttttaatatttggattccattttcccatatgactcattccctcag
gttcctatgccctggctttctatgtcagtagaatttccctgactacctcc
ttttgaaattgctgtcttctccttttctcctatgaatatgtttaactact
ttttctgtgatatcaatctagcaaagaattttactttctgcatttgcttc
ttctcttatataatagaaattcagtgtgtaatgatggggattttatttcc
ctaactaatgggtcctcagtacttctagcagtacttagcatatagtgaat
cagaagtaccacattttgccagccatgttgcctcacgcctttattcccag
cactcaggaggcgaagccagccagaattctggttcaaggccagccttgtc
ta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_66109866_66110976
seq2: B6Ng01-010P16.b_46_1141

seq1  GAATTCAAGTCACCCATTTGGAAGGTCAGTGCCTTTACCCACACTAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTCACCCATTTGGAAGGTCAGTGCCTTTACCCACACTAAAGA  50

seq1  TTTAGAAATACGGCTTTAGAAGGTGGAGATTTTTAAAAAGAAAGAAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAATACGGCTTTAGAAGGTGGAGATTTTTAAAAAGAAAGAAACAT  100

seq1  TTTTTTCTGAATGGAAAAATGATTGATATTGGGGGAGAGTCCTATTTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTGAATGGAAAAATGATTGATATTGGGGGAGAGTCCTATTTACC  150

seq1  AAGTGTAAGTGATACTGAACAAACACATAGTGAATTCTCCAAATTTACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTAAGTGATACTGAACAAACACATAGTGAATTCTCCAAATTTACAC  200

seq1  ATGCCAGTTTATAATTCTTAGTAAGATTTTAAGTCATTGAGTGACACAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGTTTATAATTCTTAGTAAGATTTTAAGTCATTGAGTGACACAAG  250

seq1  ACTAAAATGAGCAGAAAAGTGGCAGAACTTTATTGTGGGCAAAAGTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAATGAGCAGAAAAGTGGCAGAACTTTATTGTGGGCAAAAGTCACA  300

seq1  AAAATTTTGGGAAAATTTACGTGTTTAAAGCAATTAGAGGGTTGGAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTGGGAAAATTTACGTGTTTAAAGCAATTAGAGGGTTGGAAAGA  350

seq1  TGGCTCAGCGGTTAAGAGCACTGACCGCTCTTCTGAAGGTCCTGAGTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGCGGTTAAGAGCACTGACCGCTCTTCTGAAGGTCCTGAGTTCA  400

seq1  AATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGAC  450

seq1  GCCCTCTTCTGCGGTGTCTGAAGACAGTGACAGTGTACTTACATATAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTTCTGCGGTGTCTGAAGACAGTGACAGTGTACTTACATATAATA  500

seq1  AATAAAAATCAAAGAGGTACACATGTCAAGTATAGGAGTAATGTTTAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAATCAAAGAGGTACACATGTCAAGTATAGGAGTAATGTTTAACC  550

seq1  ACATAATAGCAACAGAAAATAAAGTATTTATGCTTACAATATTTTATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATAGCAACAGAAAATAAAGTATTTATGCTTACAATATTTTATAAA  600

seq1  TTTCTGATGAATATTACTTGAACAAGTCTAGGAAGGTTAATAACAATCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGATGAATATTACTTGAACAAGTCTAGGAAGGTTAATAACAATCAG  650

seq1  CAAGAGAAGGCTAGCTAATATTTATAGCATGGTACATATAGTGGTGCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAAGGCTAGCTAATATTTATAGCATGGTACATATAGTGGTGCTGG  700

seq1  ACTCTCTCTGAGTCTCCAGCTCAAAGACACAGAGACCTTTTATTAATATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTCTGAGTCTCCAGCTCAAAGACACAGAGACCTTTTATTAATATG  750

seq1  AATACCTTAGGCCTTTGTTTAGGCTTCTTCCCAACCAGCTCTAAACTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTTAGGCCTTTGTTTAGGCTTCTTCCCAACCAGCTCTAAACTTAA  800

seq1  ATTAACCTGTTTATTTTAATCTGTGTTCTGCCATATGGCTCCTGAACTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACCTGTTTATTTTAATCTGTGTTCTGCCATATGGCTCCTGAACTCT  850

seq1  CCTCAGTTTCTTATGTCCAACTTTCTCCAAGTGTGGCTGGAGACTCTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTTTCTTATGTCCAACTTTCTCCAAGTGTGGCTGGAGACTCTCCC  900

seq1  AAATCTGACTGTTTCCCAGAGTTCCTATTTTTTCCTGGGTGTTCCACCTA  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAATCTGACTGTTTCCCAGAGTTCCTA-TTTTTCCTGGGTGTTCCACCTA  949

seq1  GTCTCCTGCCCTGCTATAGGCTGTCAGCTCTTTATTAAACCCATCACCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTGCCCTGCTATAGGCTGTCAGCTCTTTATTAAACCCATCACCTT  999

seq1  AGATTAGTCACTTTAATCAGAAGGAGAATATCTTTACAAAATATGATGTA  1050
      |||||||||||||| ||||||  ||| ||||||| | |||  ||||||||
seq2  AGATTAGTCACTTT-ATCAGA--GAG-ATATCTTAAGAAA--ATGATGTA  1043

seq1  GATGCTGCTTCATACAGAGTGCACAAGAATAGTTTTCCAGCATAAACAGA  1100
      |||||||| ||||||||||||||||   |||| |||||||||| ||||||
seq2  GATGCTGC-TCATACAGAGTGCACA--GATAG-TTTCCAGCAT-AACAGA  1088

seq1  AAAGTTTTATT  1111
      |    ||||||
seq2  A---GTTTATT  1096

seq1: chr12_66255084_66256184
seq2: B6Ng01-010P16.g_66_1167 (reverse)

seq1  TAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCTGA  50
      ||||| |||||||||| |||| ||||| |||| ||| ||  |||||||||
seq2  TAGACAAGGCTGGCCTTGAAC-CAGAATTCTGGCTGGCTTCGCCTCCTGA  49

seq1  GTGCTGGGATTAAAGGCGTGCGCCACCATGCCTGGCAAAATGT-GTACTT  99
      ||||||||| |||||||||| | || |||| |||||||||||| ||||||
seq2  GTGCTGGGAATAAAGGCGTGAGGCAACATGGCTGGCAAAATGTGGTACTT  99

seq1  CTGATTCACTATATGCTAAGTACTGCTAG-AGTACTGAGGACCCATTAGT  148
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTGATTCACTATATGCTAAGTACTGCTAGAAGTACTGAGGACCCATTAGT  149

seq1  TAGGGAAATAAAATCCCCATCATTACACACTGAATTTCTATTATATAAGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAATAAAATCCCCATCATTACACACTGAATTTCTATTATATAAGA  199

seq1  GAAGAAGCAAATGCAGAAAGTAAAATTCTTTGCTAGATTGATATCACAGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGCAAATGCAGAAAGTAAAATTCTTTGCTAGATTGATATCACAGA  249

seq1  AAAAGTAGTTAAACATATTCATAGGAGAAAAGGAGAAGACAGCAATTTCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAGTTAAACATATTCATAGGAGAAAAGGAGAAGACAGCAATTTCA  299

seq1  AAAGGAGGTAGTCAGGGAAATTCTACTGACATAGAAAGCCAGGGCATAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGGTAGTCAGGGAAATTCTACTGACATAGAAAGCCAGGGCATAGG  349

seq1  AACCTGAGGGAATGAGTCATATGGGAAAATGGAATCCAAATATTAAAAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAGGGAATGAGTCATATGGGAAAATGGAATCCAAATATTAAAAAT  399

seq1  AGGAAATGAAAAGCCTTGTGACAGAGAGCTGGTTTGTTTGTGAAATAAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGAAAAGCCTTGTGACAGAGAGCTGGTTTGTTTGTGAAATAAGA  449

seq1  CAAGCAAAGCTGAACTGTAATGAAGAGTCAGTACTAGGCATATACTGAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAAGCTGAACTGTAATGAAGAGTCAGTACTAGGCATATACTGAAA  499

seq1  TGAGTAATAAAAGTCGTGATTGTGTGGGACACTACAAGGGGTCGGGTCAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAATAAAAGTCGTGATTGTGTGGGACACTACAAGGGGTCGGGTCAA  549

seq1  TTTATGATCCTGGGATTTATTTAGGAAAGAGGAGAGGCTATAGAAAGATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGATCCTGGGATTTATTTAGGAAAGAGGAGAGGCTATAGAAAGATT  599

seq1  TAACTAATAATGATGCCCACTTACCTGCTTCTTTCATGGAGACCGAGTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAATAATGATGCCCACTTACCTGCTTCTTTCATGGAGACCGAGTCT  649

seq1  ATCAATCCTTTTAAGATATAAATGTTGCCTGATAAGGTCCTAAGTTCATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCCTTTTAAGATATAAATGTTGCCTGATAAGGTCCTAAGTTCATT  699

seq1  GTGTTTAATCCGCTCTATAATTACATTGCTATGCCAATAAACATCAGTCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTAATCCGCTCTATAATTACATTGCTATGCCAATAAACATCAGTCA  749

seq1  TATCTCTAGGGGGGGAAAAGAATAAGTTTAATAAGGTCAAAGTATTTATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTAGGGGGGGAAAAGAATAAGTTTAATAAGGTCAAAGTATTTATA  799

seq1  CTTTACTAGGAACTGTATATACACATAGAAGCATACAAACTTATAATGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTAGGAACTGTATATACACATAGAAGCATACAAACTTATAATGAA  849

seq1  GGACTGGGTGTGAGCCAGTTATGTGTAATCTCAACACCTTGTATATAAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGGGTGTGAGCCAGTTATGTGTAATCTCAACACCTTGTATATAAAA  899

seq1  GCAGGAGGAGTGCTCTAGGTTTGAGACCAGCTTGTTCTACATACTAAGTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGGAGTGCTCTAGGTTTGAGACCAGCTTGTTCTACATACTAAGTT  949

seq1  CCATGCCAACGAGGGCTTCATAGTGAGATGCAATCTTGATGTCACTCTCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCAACGAGGGCTTCATAGTGAGATGCAATCTTGATGTCACTCTCC  999

seq1  ACTTCAAAAAGGAAGTATTCATTCTGTACTCTTAGCTATCACAACAATAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAAAAGGAAGTATTCATTCTGTACTCTTAGCTATCACAACAATAA  1049

seq1  CAGCATTATTAATCTAATTACAAAACATCTGAGGACTAACCAGTACAGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTATTAATCTAATTACAAAACATCTGAGGACTAACCAGTACAGAA  1099

seq1  TTC  1101
      |||
seq2  TTC  1102