BAC Information

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BAC

Clone NameB6Ng01-011O13
Chromosome5 (Build37)12 (Build37)
Map Location 148,223,059 - 148,223,65496,676,763 - 96,676,925
singlet/doubletsingletsinglet
Overlap geneLOC100039805
Upstream geneWasf3, LOC623198, LOC622924, 4930449I24Rik, LOC100041548, LOC100041554, LOC100041566, LOC100041578, EG667172, Gpr12, Usp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3, Lnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254
Downstream genePan3, Flt1, LOC100039825, Pomp, Slc46a3, C130038G02Rik, LOC100041819, Slc7a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011O13.bB6Ng01-011O13.g
ACCDH847161DH847162
length591226
definitionDH847161|Mus musculus domesticus DNA, BAC clone: B6Ng01-011O13, 5' end.DH847162|Mus musculus domesticus DNA, BAC clone: B6Ng01-011O13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(148,223,059 - 148,223,654)(96,676,763 - 96,676,925)
sequence
tttcaagtattgtctgtagagtgggcttagcaactgttctcagcctgtgg
gttgagacccttgggggttgaatgaccctttcacagggggtcacaaatca
gatattctgcatatcaaatatttgcattacaattcataacagtagcatcg
acaagaataatgttatggttggagaggtcaccacagcataaggaactgta
ttaaagggttgcagcactaggaaggctgagaactgctggcttagaggcta
tgcatgttctcagtcatagcaagtttctcttcttcgattatgatgaagag
ctgggtataatagtctaggttggcagttgttatctctcagaacatctgtc
ctttaaaagtgtcagctggccgggcagtcacttgggaggcagaggcaggc
agatttctgagttcgaggccagcctggtctacagagcgagttccaggaca
gccagggctacagaaaccctgtcttgaaaaacaaacaaacaaacaaacaa
ataagtgtcagctgaagtttctgttattctgatgtgacttagtgcttttc
tctggcttcttttaatacacttgtttgctcttaatagttaa
aaggtcgtttgcagttttgtataaatatcaaggctggtctgagctactta
agaacctcttgccgctgggtggtggtggtgcatccctttaatcccagcac
ttgggaggcagaggcaggcggatttctgagttcgaagccagcctggtcta
caaagtgagttccaggacagccagggctatacagagaaaccttgtctcaa
aaaaaacaaaaaaacaaaacaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_148223059_148223654
seq2: B6Ng01-011O13.b_46_641

seq1  GAATTCTTTCAAGTATTGTCTGTAGAGTGGGCTTAGCAACTGTTCTCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAAGTATTGTCTGTAGAGTGGGCTTAGCAACTGTTCTCAGC  50

seq1  CTGTGGGTTGAGACCCTTGGGGGTTGAATGACCCTTTCACAGGGGGTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGTTGAGACCCTTGGGGGTTGAATGACCCTTTCACAGGGGGTCAC  100

seq1  AAATCAGATATTCTGCATATCAAATATTTGCATTACAATTCATAACAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGATATTCTGCATATCAAATATTTGCATTACAATTCATAACAGTA  150

seq1  GCATCGACAAGAATAATGTTATGGTTGGAGAGGTCACCACAGCATAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCGACAAGAATAATGTTATGGTTGGAGAGGTCACCACAGCATAAGGA  200

seq1  ACTGTATTAAAGGGTTGCAGCACTAGGAAGGCTGAGAACTGCTGGCTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATTAAAGGGTTGCAGCACTAGGAAGGCTGAGAACTGCTGGCTTAG  250

seq1  AGGCTATGCATGTTCTCAGTCATAGCAAGTTTCTCTTCTTCGATTATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATGCATGTTCTCAGTCATAGCAAGTTTCTCTTCTTCGATTATGAT  300

seq1  GAAGAGCTGGGTATAATAGTCTAGGTTGGCAGTTGTTATCTCTCAGAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCTGGGTATAATAGTCTAGGTTGGCAGTTGTTATCTCTCAGAACA  350

seq1  TCTGTCCTTTAAAAGTGTCAGCTGGCCGGGCAGTCACTTGGGAGGCAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCTTTAAAAGTGTCAGCTGGCCGGGCAGTCACTTGGGAGGCAGAG  400

seq1  GCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGCGAGTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGCGAGTTCC  450

seq1  AGGACAGCCAGGGCTACAGAAACCCTGTCTTGAAAAACAAACAAACAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGCCAGGGCTACAGAAACCCTGTCTTGAAAAACAAACAAACAAAC  500

seq1  AAACAAAAAAGTGTCAGCTGAAGTTTCTGTTATTCTGATGTGACTTAGTG  550
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATAAGTGTCAGCTGAAGTTTCTGTTATTCTGATGTGACTTAGTG  550

seq1  CTTTTCTCTGGCCACTTTTAATACACTTGTTTGCTCTTTATAGTTA  596
      ||||||||||||  |||||||||||||||||||||||| |||||||
seq2  CTTTTCTCTGGCTTCTTTTAATACACTTGTTTGCTCTTAATAGTTA  596

seq1: chr12_96676763_96676925
seq2: B6Ng01-011O13.g_138_299 (reverse)

seq1  TTTTTTGTTTTTTTGTTTTTTTTTTTTTTGAGACAAGGTTTCTCTGTGTA  50
      ||||||||||| || ||||| |||||||||||||||||||||||||| ||
seq2  TTTTTTGTTTTGTT-TTTTTGTTTTTTTTGAGACAAGGTTTCTCTGTATA  49

seq1  GCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTC  100
      |||||||||||||||||||||||| |||||||||||||||| ||||||||
seq2  GCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCTTCGAACTC  99

seq1  AGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGAGATTAAAGGCATGCTC  150
      ||||||| ||||||||||||||||||||||||| ||||||||| |||| |
seq2  AGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGGATGCAC  149

seq1  CACCACCACCCAG  163
      |||||||||||||
seq2  CACCACCACCCAG  162