BAC Information

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BAC

Clone NameB6Ng01-013B01
Chromosome12 (Build37)
Map Location 41,423,995 - 41,567,453
singlet/doubletdoublet
Overlap geneDock4
Upstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277
Downstream geneLOC638487, LOC100043157, LOC100043162, Lrrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013B01.bB6Ng01-013B01.g
ACCDH847981DH847982
length997968
definitionDH847981|Mus musculus domesticus DNA, BAC clone: B6Ng01-013B01, 5' end.DH847982|Mus musculus domesticus DNA, BAC clone: B6Ng01-013B01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,566,459 - 41,567,453)(41,423,995 - 41,424,963)
sequence
gaattccttagtctcctgacacctcctaagtgcttaggttatgtgtctgt
gctgccacgcttggctctcaaatcctttctaaacctccaagtccagatgc
ctttcatcactcaactgcttgatctcataaaatgctcctgggggaaagtg
ctaggagtcgttgggagacaccttctgtctttggcctgaacagggaagac
caaggccctgcaggcagcctagagcaggcctatagggatgttcagtaacc
cttccctttcacctcacctcccaacattcccagtgcagacagaaagcttg
tccacatcagtacaaagggagataagcttcccatttcttctctaatgcct
gtccataggccttccctcagtccgctgggtggggaatttgagatatcacc
atcatggcaagagtgacttctgcttctctggggttttcaggtctgatgcc
agggacccagcatgtgtggcatgtgctcttttgtgtgcttacagatcacg
tcttgtttctagactgtaactgcatagcataaaaacagcttgtgacccag
tcgacggggcgaggccaagccgtccttcccacttccacacagagtgattt
tggcgaatgtgagctctgtccctctgtgatttcctgccactcttccagcc
atcacactgaggtctagaactcataaaaacctaccgaaaggctgaaagga
agaaagacagacagttgcacagccccacaaacactgaccacagatgatga
catcaggacagaccatgaaagcaatcagtacagaagggacagcagcccta
ccaatctatgtgggaggagaaagggttgcccagctgtgctgagccctaag
agaccacagagggtggtccattatcacactgcggggttgggaggtctcat
ctcacaagccagctcctacttctgttcccacacgttgtgagtgctgacta
ggaagaaaaccacatatgtactgaagtaatcggccacatctgccact
gaattctttattcagagggttaccagtagcactttacatacacatcttaa
tctctacacttcagtttcatctatcaaatggaatggttagtgccgtccta
taaatgcaaggcaagatctaggtagacattcaaatgctttgtgaagaacc
caactcatagcagccatttagtaaaatgatctgttgttgttcatgttgct
ggaactactactgtagaagaatagccatgtctaaaactattaagacctaa
gtgtttgagactctagaggtgtgttaggattttcaaatttttccataggg
ccaggagtggcagcacacacttttaatacgagcccttgggaggagacaga
ggcaggtgaatctttgtgagtctgaggtcagcctggtctacatagttata
gccaaggctatatagtgagagcttgtctttaaaaaaattaaattaaatta
aattaaattaaattaaattgaaagaaaggaaggaaggaaggaaggaagga
aggaaggaaggaaggaagacaagacaagacaagacaagacaagaaaagaa
aagaaaagaaaagaaaagaaaagaaaagagaagaaaatcctaggtcatgt
gcatattttttttcttcttaacagagggacagcttttctctaattccata
aactttaaatgttcagataaagaactgggctggccctgtgaaaacactat
acagtggttacataatagagctgtcatgcattttatgtctgtgtcccgcc
agggcaaatccaggacagcatagaggacgcagagtgaatcctctgacaga
gatcttactcattttcttcaatgatcaattatcctattgacgtcatctac
cgaagtgctttgttcccactaatgtgctttaccctttcctacctacaata
ttttgagaactctttaaggtgtgcacaggccagtggggcctgcttataaa
gaagagaaacctatgaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_41566459_41567453
seq2: B6Ng01-013B01.b_41_1037 (reverse)

seq1  AGTGGCAGATGTGGCCGATTTC-TCTGTACATATGTGGTTTTCTTCCTAG  49
      |||||||||||||||||||| | || ||||||||||||||||||||||||
seq2  AGTGGCAGATGTGGCCGATTACTTCAGTACATATGTGGTTTTCTTCCTAG  50

seq1  TCAGCACTCACAACGTGTGGGAACAGAAGTAGGAGCTGGCTTGTGTAGAT  99
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCAGCACTCACAACGTGTGGGAACAGAAGTAGGAGCTGGCTTGTG-AGAT  99

seq1  GAGACCTCCCAACCCCGCAGTGTGATAATGGACCACCCTCTGTGGTCTCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTCCCAACCCCGCAGTGTGATAATGGACCACCCTCTGTGGTCTCT  149

seq1  TAGGGCTCAGCACAGCTGGGCAACCC-TTCTCCTCCCACATAGATTGGTA  198
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAGGGCTCAGCACAGCTGGGCAACCCTTTCTCCTCCCACATAGATTGGTA  199

seq1  GGGCTGCTGTCCCTTCTGTACTGATTGCTTTCATGGTCTGTCCTGATGTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCTGTCCCTTCTGTACTGATTGCTTTCATGGTCTGTCCTGATGTC  249

seq1  ATCATCTGTGGTCAGTG-TTGTGGGGCTGTGCAACTGTCTGTCTTTCTTC  297
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATCATCTGTGGTCAGTGTTTGTGGGGCTGTGCAACTGTCTGTCTTTCTTC  299

seq1  CTTTCAGCCTTTCGGTAGGTTTTTATGAGTTCTAGACCTCAGTGTGATGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGCCTTTCGGTAGGTTTTTATGAGTTCTAGACCTCAGTGTGATGG  349

seq1  CTGGAAGAGTGGCAGGAAATCACAGAGGGACAGAGCTCACATTCGCCAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGAGTGGCAGGAAATCACAGAGGGACAGAGCTCACATTCGCCAAA  399

seq1  ATCACTCTGTGTGGAAGTGGGAAGGACGGCTTGGCCTCGCCCCGTCGACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCTGTGTGGAAGTGGGAAGGACGGCTTGGCCTCGCCCCGTCGACT  449

seq1  GGGTCACAAGCTGTTTTTATGCTATGCAGTTACAGTCTAGAAACAAGACG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCACAAGCTGTTTTTATGCTATGCAGTTACAGTCTAGAAACAAGACG  499

seq1  TGATCTGTAAGCACACAAAAGAGCACATGCCACACATGCTGGGTCCCTGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGTAAGCACACAAAAGAGCACATGCCACACATGCTGGGTCCCTGG  549

seq1  CATCAGACCTGAAAACCCCAGAGAAGCAGAAGTCACTCTTGCCATGATGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGACCTGAAAACCCCAGAGAAGCAGAAGTCACTCTTGCCATGATGG  599

seq1  TGATATCTCAAATTCCCCACCCAGCGGACTGAGGGAAGGCCTATGGACAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATCTCAAATTCCCCACCCAGCGGACTGAGGGAAGGCCTATGGACAG  649

seq1  GCATTAGAGAAGAAATGGGAAGCTTATCTCCCTTTGTACTGATGTGGACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAGAGAAGAAATGGGAAGCTTATCTCCCTTTGTACTGATGTGGACA  699

seq1  AGCTTTCTGTCTGCACTGGGAATGTTGGGAGGTGAGGTGAAAGGGAAGGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCTGTCTGCACTGGGAATGTTGGGAGGTGAGGTGAAAGGGAAGGG  749

seq1  TTACTGAACATCCCTATAGGCCTGCTCTAGGCTGCCTGCAGGGCCTTGGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGAACATCCCTATAGGCCTGCTCTAGGCTGCCTGCAGGGCCTTGGT  799

seq1  CTTCCCTGTTCAGGCCAAAGACAGAAGGTGTCTCCCAACGACTCCTAGCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTGTTCAGGCCAAAGACAGAAGGTGTCTCCCAACGACTCCTAGCA  849

seq1  CTTTCCCCCAGGAGCATTTTATGAGATCAAGCAGTTGAGTGATGAAAGGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCCCAGGAGCATTTTATGAGATCAAGCAGTTGAGTGATGAAAGGC  899

seq1  ATCTGGACTTGGAGGTTTAGAAAGGATTTGAGAGCCAAGCGTGGCAGCAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGACTTGGAGGTTTAGAAAGGATTTGAGAGCCAAGCGTGGCAGCAC  949

seq1  AGACACATAACCTAAGCACTTAGGAGGTGTCAGGAGACTAAGGAATTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACATAACCTAAGCACTTAGGAGGTGTCAGGAGACTAAGGAATTC  997

seq1: chr12_41423995_41424963
seq2: B6Ng01-013B01.g_64_1031

seq1  GAATTCTTTATTCAGAGGGTTACCAGTAGCACTTTACATACACATCTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATTCAGAGGGTTACCAGTAGCACTTTACATACACATCTTAA  50

seq1  TCTCTACACTTCAGTTTCATCTATCAAATGGAATGGTTAGTGCCGTCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACACTTCAGTTTCATCTATCAAATGGAATGGTTAGTGCCGTCCTA  100

seq1  TAAATGCAAGGCAAGATCTAGGTAGACATTCAAATGCTTTGTGAAGAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCAAGGCAAGATCTAGGTAGACATTCAAATGCTTTGTGAAGAACC  150

seq1  CAACTCATAGCAGCCATTTAGTAAAATGATCTGTTGTTGTTCATGTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCATAGCAGCCATTTAGTAAAATGATCTGTTGTTGTTCATGTTGCT  200

seq1  GGAACTACTACTGTAGAAGAATAGCCATGTCTAAAACTATTAAGACCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTACTACTGTAGAAGAATAGCCATGTCTAAAACTATTAAGACCTAA  250

seq1  GTGTTTGAGACTCTAGAGGTGTGTTAGGATTTTCAAATTTTTCCATAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGAGACTCTAGAGGTGTGTTAGGATTTTCAAATTTTTCCATAGGG  300

seq1  CCAGGAGTGGCAGCACACACTTTTAATACGAGCCCTTGGGAGGAGACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGTGGCAGCACACACTTTTAATACGAGCCCTTGGGAGGAGACAGA  350

seq1  GGCAGGTGAATCTTTGTGAGTCTGAGGTCAGCCTGGTCTACATAGTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTGAATCTTTGTGAGTCTGAGGTCAGCCTGGTCTACATAGTTATA  400

seq1  GCCAAGGCTATATAGTGAGAGCTTGTCTTTAAAAAAATTAAATTAAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGCTATATAGTGAGAGCTTGTCTTTAAAAAAATTAAATTAAATTA  450

seq1  AATTAAATTAAATTAAATTGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATTAAATTAAATTGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGA  500

seq1  AGGAAGGAAGGAAGGAAGACAAGACAAGACAAGACAAGACAAGAAAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAGGAAGGAAGACAAGACAAGACAAGACAAGACAAGAAAAGAA  550

seq1  AAGAAAAGAAAAGAAAAGAAAAGAAAAGAGAAGAAAATCCTAGGTCATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGAAAAGAAAAGAAAAGAAAAGAGAAGAAAATCCTAGGTCATGT  600

seq1  GCATATTTTTTTTCTTCTTAACAGAGGGACAGCTTTTCTCTAATTCCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTTTTTTTCTTCTTAACAGAGGGACAGCTTTTCTCTAATTCCATA  650

seq1  AACTTTAAATGTTCAGATAAAGAACTGGGCTGGCCCTGTGAAAACACTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAAATGTTCAGATAAAGAACTGGGCTGGCCCTGTGAAAACACTAT  700

seq1  ACAGTGGTTACATAATAGAGCTGTCATGCATTTTATGTCTGTGTCCCGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGTTACATAATAGAGCTGTCATGCATTTTATGTCTGTGTCCCGCC  750

seq1  AGGGCAAATCCAGGACAGCATAGAGGACGCAGGAGTGAATCCTCTGACAG  800
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGGGCAAATCCAGGACAGCATAGAGGACGCA-GAGTGAATCCTCTGACAG  799

seq1  AGATCTTACTCATTTTCTTCAAATGATCAATTATCCTATTGACGTCATCT  850
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGATCTTACTCATTTTCTTC-AATGATCAATTATCCTATTGACGTCATCT  848

seq1  ACCGAAGTGCTTTGTTCCCACTAATGTGTCTTTACCCTTTTCTTACCTAC  900
      |||||||||||||||||||||||||||| |||||||| |||| |||||||
seq2  ACCGAAGTGCTTTGTTCCCACTAATGTG-CTTTACCC-TTTCCTACCTAC  896

seq1  AATATTTTGAGAACTCTTT-AGGTGTGCACAGGCCAGT-GGGCCTGC-TA  947
      ||||||||||||||||||| |||||||||||||||||| |||||||| ||
seq2  AATATTTTGAGAACTCTTTAAGGTGTGCACAGGCCAGTGGGGCCTGCTTA  946

seq1  TAGAGAAGAGAAACCAATGAAT  969
      || |||||||||||| ||||||
seq2  TAAAGAAGAGAAACCTATGAAT  968