BAC Information

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BAC

Clone NameB6Ng01-013B11
Chromosome12 (Build37)
Map Location 30,170,167 - 30,171,364
singlet/doubletsinglet
Overlap genenone
Upstream gene1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1, 4833405L11Rik, LOC629608
Downstream geneMyt1l, LOC100043496, Pxdn, Tpo, Sntg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013B11.bB6Ng01-013B11.g
ACCDH847999DH848000
length1,1781,156
definitionDH847999|Mus musculus domesticus DNA, BAC clone: B6Ng01-013B11, 5' end.DH848000|Mus musculus domesticus DNA, BAC clone: B6Ng01-013B11, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgaggagcaaagatattctcattagggccagaactaaacctccg
tacttctaggcagtacaagatacaaagtagtttgcaacttatttaaatat
cttttgcttagagttttcaggtgccgtcactcatacaaagaaagtcaaaa
tcatgtcatttgatttatttcacagctaactgtcacctgacatatttgta
attgtctacaggcatggttgccaaccatataataaagttcacatccaaaa
aatgtgtcctggtctaccttccttttaaatcttggtttgttcagagcact
ttcaaatccacacaagatcttgagggtagaacagagacaccccagtgttt
ttacaaattcagagtcttccatagtcagaatgaccctgaagcatggtaag
agctcatagatctcccctcaccacagaatccacagtgacctaatgaacac
taatgagatgatctcacagaagccttccctggcttcctcttgctttgggg
acaccattattctccatactagcctgtgggtgcctgtgcttgtctctctc
tgaaccctgctctttcctgcagagcacactgactctctgtgaagggtgcc
tgatgctgtcattaagagtctatcactagaaccaagcaaaattgcacctg
tgccatgataaaagaaaatggaaagcatgggaccatgaaccatgactgag
cgtcctgcttgacctgaggtgcgatagaagtgaagaaagtcagggtcttt
gaacggtttagtagctctgtgaccttggatgggtcacttcatgcctctac
tactctaaatgctgtgccctcatacagatgttctaaggtgaagtaagatt
ttacaaagtccagtggcaaagtgcttcacaatccacctgagcccctctgt
tgtaaaaacacagccacatttctgcaaaatggctgacttgggccaggtaa
gcattctggggagtgtttagcactcgaggatatcacatttattgccttgt
tgggggcatgcagcatggctcctggttgcttgcatcatttagagactaga
gtctggaaaagcagatagcatctgcttcaactttgcatctgtctggattc
ccttgcatcatctaggaatttggtcaaggcattaaaattctcttcaagaa
ggatcacttgttcttggtaatgaaggca
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctcgaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagccccaaacc
tagaatacccaagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacaaagcttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgctggggcctagcaaca
cagaagtggatgctcacagtcagctaatggatggatcatagggctcccaa
tggaggagctagagaaagtagccagagctaagggatctgcacctatagtg
gaacaacattatgactacagtacccgagctctggactctagctgattata
tcaaagatggctagtcgcatcactgcaagaagaggccatggactgtgcaa
gctttatgctcagtacgggaaccacaggccaaaatgtatgttgtgcaggg
agtagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_30170167_30171364
seq2: B6Ng01-013B11.b_46_1223 (reverse)

seq1  TGCCTTCATTATCACCAAAGGAACAAGGTTGAATCCTTTCCTGAAGAGGA  50
      ||||||||||   |||||  |||||||  || |||| ||| ||||||| |
seq2  TGCCTTCATT---ACCAA--GAACAAG--TG-ATCC-TTCTTGAAGAGAA  41

seq1  ATTTTATGCCCTGGACAAATGCTTAGATGGATGCAAAGGGTATCCAGACA  100
       ||| ||||| ||  ||||| | ||||| ||||| ||||| |||||||||
seq2  TTTTAATGCCTTGACCAAATTCCTAGAT-GATGC-AAGGGAATCCAGACA  89

seq1  GATGCAAAAGTTGAAGCAAGGATGCTATACCTGCTTTGTCCCAGACTTCT  150
      ||||| ||||||||||||  ||||||||  ||||||  | |||||| |||
seq2  GATGC-AAAGTTGAAGCA--GATGCTAT--CTGCTT--TTCCAGAC-TCT  131

seq1  AGTCTCTAAATGATGCCAGCAACCCAGGAGCCATGCTGCATGCCCCCAAC  200
      |||||||||||||||| ||||| |||||||||||||||||||||||||||
seq2  AGTCTCTAAATGATGCAAGCAA-CCAGGAGCCATGCTGCATGCCCCCAAC  180

seq1  AAGGCAATAAATGTGATATCCTCGAGTGCTAAACACTCCCCAGAATGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAATAAATGTGATATCCTCGAGTGCTAAACACTCCCCAGAATGCTT  230

seq1  ACCTGGCCCAAGTCAGCCATTTTGCAGAAATGTGGCTGTGTTTTTACAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCCCAAGTCAGCCATTTTGCAGAAATGTGGCTGTGTTTTTACAAC  280

seq1  AGAGGGGCTCAGGTGGATTGTGAAGCACTTTGCCACTGGACTTTGTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGCTCAGGTGGATTGTGAAGCACTTTGCCACTGGACTTTGTAAAA  330

seq1  TCTTACTTCACCTTAGAACATCTGTATGAGGGCACAGCATTTAGAGTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTTCACCTTAGAACATCTGTATGAGGGCACAGCATTTAGAGTAGT  380

seq1  AGAGGCATGAAGTGACCCATCCAAGGTCACAGAGCTACTAAACCGTTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCATGAAGTGACCCATCCAAGGTCACAGAGCTACTAAACCGTTCAA  430

seq1  AGACCCTGACTTTCTTCACTTCTATCGCACCTCAGGTCAAGCAGGACGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTGACTTTCTTCACTTCTATCGCACCTCAGGTCAAGCAGGACGCT  480

seq1  CAGTCATGGTTCATGGTCCCATGCTTTCCATTTTCTTTTATCATGGCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATGGTTCATGGTCCCATGCTTTCCATTTTCTTTTATCATGGCACA  530

seq1  GGTGCAATTTTGCTTGGTTCTAGTGATAGACTCTTAATGACAGCATCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAATTTTGCTTGGTTCTAGTGATAGACTCTTAATGACAGCATCAGG  580

seq1  CACCCTTCACAGAGAGTCAGTGTGCTCTGCAGGAAAGAGCAGGGTTCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTCACAGAGAGTCAGTGTGCTCTGCAGGAAAGAGCAGGGTTCAGA  630

seq1  GAGAGACAAGCACAGGCACCCACAGGCTAGTATGGAGAATAATGGTGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACAAGCACAGGCACCCACAGGCTAGTATGGAGAATAATGGTGTCC  680

seq1  CCAAAGCAAGAGGAAGCCAGGGAAGGCTTCTGTGAGATCATCTCATTAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCAAGAGGAAGCCAGGGAAGGCTTCTGTGAGATCATCTCATTAGT  730

seq1  GTTCATTAGGTCACTGTGGATTCTGTGGTGAGGGGAGATCTATGAGCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTAGGTCACTGTGGATTCTGTGGTGAGGGGAGATCTATGAGCTCT  780

seq1  TACCATGCTTCAGGGTCATTCTGACTATGGAAGACTCTGAATTTGTAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGCTTCAGGGTCATTCTGACTATGGAAGACTCTGAATTTGTAAAA  830

seq1  ACACTGGGGTGTCTCTGTTCTACCCTCAAGATCTTGTGTGGATTTGAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGGGTGTCTCTGTTCTACCCTCAAGATCTTGTGTGGATTTGAAAG  880

seq1  TGCTCTGAACAAACCAAGATTTAAAAGGAAGGTAGACCAGGACACATTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGAACAAACCAAGATTTAAAAGGAAGGTAGACCAGGACACATTTT  930

seq1  TTGGATGTGAACTTTATTATATGGTTGGCAACCATGCCTGTAGACAATTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATGTGAACTTTATTATATGGTTGGCAACCATGCCTGTAGACAATTA  980

seq1  CAAATATGTCAGGTGACAGTTAGCTGTGAAATAAATCAAATGACATGATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATGTCAGGTGACAGTTAGCTGTGAAATAAATCAAATGACATGATT  1030

seq1  TTGACTTTCTTTGTATGAGTGACGGCACCTGAAAACTCTAAGCAAAAGAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTTCTTTGTATGAGTGACGGCACCTGAAAACTCTAAGCAAAAGAT  1080

seq1  ATTTAAATAAGTTGCAAACTACTTTGTATCTTGTACTGCCTAGAAGTACG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATAAGTTGCAAACTACTTTGTATCTTGTACTGCCTAGAAGTACG  1130

seq1  GAGGTTTAGTTCTGGCCCTAATGAGAATATCTTTGCTCCTCAGAATTC  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTAGTTCTGGCCCTAATGAGAATATCTTTGCTCCTCAGAATTC  1178