BAC Information

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BAC

Clone NameB6Ng01-013H20
Chromosome12 (Build37)
Map Location 117,200,892 - 117,404,489
singlet/doubletdoublet
Overlap geneIgh, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058
Upstream geneIghv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1
Downstream geneWdr60, LOC100042963, D12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, Ptprn2, LOC627375
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013H20.bB6Ng01-013H20.g
ACCDH848291DH848292
length1,066662
definitionDH848291|Mus musculus domesticus DNA, BAC clone: B6Ng01-013H20, 5' end.DH848292|Mus musculus domesticus DNA, BAC clone: B6Ng01-013H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,200,892 - 117,201,724)(117,403,837 - 117,404,489)
sequence
gaattctttgttcagttctgagccccatcttttaagggggttatttgatt
ttctggagtccaccctcttgagttctttatatatattggatgttagtccc
ctatctgatttaagataggtaaagatccttttccaatctgttggtggcct
ttttgttttattgacggtgtcttttgccttgcagaagctttgcagtttca
tgaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctattcaggaatttttccctgtgcccatatcttcgaagcttttccccact
ttctcctctataagtttcagtgtctctggttttatgtgaagttccttgat
ccacttagatttgaccttagtacaaggagaaaggaatgggtcgattcgca
ttcttctacatgataacaaccagttgtgccagcaccaattgttgaaaatg
ctgtctttcttccactggatggttttagctcccttgtcgaagatcaagtg
accataggtgtgtgggttcatttctgggtcttcaattctattccattggt
ctacttgtctgtcactataccagtaccatgcagtttttatcacaattgtt
aggtagtacagctttaggtcaggcatggttgattccaccagaggtacttt
tatccttgagaagagcttttgctatcctaggttttttgttattccagatg
aatttgcagatagctttaaattaaaaaaaaaaaaacattgtgttgttaaa
agttccatgaaaagctgatttaacgatattttgaccaaacctacagatat
attttacatgcttgtgcattctgatataaaaaatttcttcactttctaag
aagactggaaatttctgctggaacaatgtgacatgagctaatacacttga
aggtcactttaacactattgaggcagtaattctttgcctaatggtgggga
ttgcatttcaaagaatccacattcccattatacattattccaacaatttc
aaaaaatggtgggtcactccaggatccaggggatatttttacgcatgcaa
aacaatacctttccat
gaattcctgacagtttgtattttgtgagtctcacagctgcccgatgatga
gagttttatcagcacctcctctaaattcaaactctttgggggcaaagacc
agattcccctggagtgagtgctgtacagtgttggacacacggctttctag
gtgcatgatggtgatgaaaaggtcatggaagatgtttccctgggtcccag
attttggtaagatacctgcttgggaagggttgttgatcccaaagccaggg
ccagagacctgtgtttgtctagcatacagctatcaaggagatcaggacag
cttggcaaatcacataccacaaaacttgtgaacttactgattgttcaata
gattctgacattgttaaaagacacataacatgttcaggacagctgggttt
catagatcttctcttcttatagtcaaacccaccagctggagcaagcactg
agtcattgtggtctgggagaagttgtgaggtgttgaaagacaagaagggg
ctactgctttcaatagaaaaagcatcaaattttaaattcctttacagatt
gtgtgggttgggttttgtttacatactctttccctgatattcccctcatg
attccccaaacctttacaagtctctgtcacacaggaaagttcttacacac
acacacacactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_117200892_117201724
seq2: B6Ng01-013H20.b_265_1112

seq1  TTCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCC  50

seq1  CTGTGCCCATATCTTCGAAGCTTTTCCCCACTTTCTCCTCTATAAGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCCATATCTTCGAAGCTTTTCCCCACTTTCTCCTCTATAAGTTTC  100

seq1  AGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATTTGACCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATTTGACCTT  150

seq1  AGTACAAGGAGAAAGGAATGGGTCGATTCGCATTCTTCTACATGATAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAAGGAGAAAGGAATGGGTCGATTCGCATTCTTCTACATGATAACA  200

seq1  ACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTTCCACTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTTCCACTGG  250

seq1  ATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGTGTGGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGTGTGGGTT  300

seq1  CATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTCACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTCACTAT  350

seq1  ACCAGTACCATGCAGTTTTTATCACAATTGTTAGGTAGTACAGCTTTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTACCATGCAGTTTTTATCACAATTGTTAGGTAGTACAGCTTTAGG  400

seq1  TCAGGCATGG-TGATTCCACCAGAGGTACTTTTATCCTTGAGAAGAGCTT  449
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCATGGTTGATTCCACCAGAGGTACTTTTATCCTTGAGAAGAGCTT  450

seq1  TTGCTATCCTAGGTTTTTTGTTATTCCAGATGAATTTGCAGATAGCTTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATCCTAGGTTTTTTGTTATTCCAGATGAATTTGCAGATAGCTTTA  500

seq1  AATT-AAAAAAAAAAAACATTGTGTTGTTAAAAGTTCAATG-AAAGCTGA  547
      |||| |||||||||||||||||||||||||||||||| ||| ||||||||
seq2  AATTAAAAAAAAAAAAACATTGTGTTGTTAAAAGTTCCATGAAAAGCTGA  550

seq1  TTTAACGATATTTTGACC-AACCTACAGATATA-TTTACATGCTTGTGCA  595
      |||||||||||||||||| |||||||||||||| ||||||||||||||||
seq2  TTTAACGATATTTTGACCAAACCTACAGATATATTTTACATGCTTGTGCA  600

seq1  TTCTGATAT-AAAAATTTC-TCACTTTCTAAG-AGACTGG-AATTTCTGC  641
      ||||||||| ||||||||| |||||||||||| ||||||| |||||||||
seq2  TTCTGATATAAAAAATTTCTTCACTTTCTAAGAAGACTGGAAATTTCTGC  650

seq1  TGGAAC-ATGTGACATGAGCTAATACACTTG-AGGTCAC-TTAACACTA-  687
      |||||| |||||||||||||||||||||||| ||||||| ||||||||| 
seq2  TGGAACAATGTGACATGAGCTAATACACTTGAAGGTCACTTTAACACTAT  700

seq1  TGAAGCAGTAATTCTTTGCCTAAATGTTGGTGATTTGCATTTCAGAGA--  735
      ||| ||||||||||||||||| |||| ||| || |||||||||| |||  
seq2  TGAGGCAGTAATTCTTTGCCT-AATGGTGGGGA-TTGCATTTCAAAGAAT  748

seq1  TCACATTCCCATTATACATTATTCCCAACAATTTCAAAAAAGTGATGGTC  785
       |||||||||||||||||||||| |||||||||||||||||  |  ||||
seq2  CCACATTCCCATTATACATTATT-CCAACAATTTCAAAAAATGGTGGGTC  797

seq1  ACT-CAGGATCCA-GTGATATTTTTA-ACATGCAAAAACATACTTTTCCA  832
      ||| ||||||||| | ||||||||||  |||||||||  |||| ||||||
seq2  ACTCCAGGATCCAGGGGATATTTTTACGCATGCAAAACAATACCTTTCCA  847

seq1  T  833
      |
seq2  T  848

seq1: chr12_117403837_117404489
seq2: B6Ng01-013H20.g_60_721 (reverse)

seq1  GTGTGTGTGTGTGTGTGTATGAACTTTCCTGTGTGACAGAGACTTGTAAA  50
      | ||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAGTGTGTGTGTGTGTGTAAGAACTTTCCTGTGTGACAGAGACTTGTAAA  50

seq1  GGTTTGGGGAATCATGA-GGGAATATCA-GGAAAGAGTATGT-AACAAAA  97
      ||||||||||||||||| |||||||||| ||||||||||||| |||||||
seq2  GGTTTGGGGAATCATGAGGGGAATATCAGGGAAAGAGTATGTAAACAAAA  100

seq1  CCCAA-CCACACAATCTGT-AAGGAATTT-AAATTTGATGCTTTTTCTAT  144
      ||||| ||||||||||||| ||||||||| ||||||||||||||||||||
seq2  CCCAACCCACACAATCTGTAAAGGAATTTAAAATTTGATGCTTTTTCTAT  150

seq1  TG-AAGCAGTAG-CCCTTCTTGTC-TTCAACACCTCACAACTTCTCCCAG  191
      || ||||||||| ||||||||||| |||||||||||||||||||||||||
seq2  TGAAAGCAGTAGCCCCTTCTTGTCTTTCAACACCTCACAACTTCTCCCAG  200

seq1  ACCACAATGACTCAGTGCTTGCTCCAGCTGGTGGGTTTGACTATAAGAAG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAATGACTCAGTGCTTGCTCCAGCTGGTGGGTTTGACTATAAGAAG  250

seq1  AGAAGATCTATGAAACCCAGCTGTCCTGAACATGTTATGTGTCTTTTAAC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATCTATGAAACCCAGCTGTCCTGAACATGTTATGTGTCTTTTAAC  300

seq1  AATGTCAGAATCTATTGAACAATCAGTAAGTTCACAAGTTTTGTGGTATG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAGAATCTATTGAACAATCAGTAAGTTCACAAGTTTTGTGGTATG  350

seq1  TGATTTGCCAAGCTGTCCTGATCTCCTTGATAGCTGTATGCTAGACAAAC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGCCAAGCTGTCCTGATCTCCTTGATAGCTGTATGCTAGACAAAC  400

seq1  ACAGGTCTCTGGCCCTGGCTTTGGGATCAACAACCCTTCCCAAGCAGGTA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCTCTGGCCCTGGCTTTGGGATCAACAACCCTTCCCAAGCAGGTA  450

seq1  TCTTACCAAAATCTGGGACCCAGGGAAACATCTTCCATGACCTTTTCATC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCAAAATCTGGGACCCAGGGAAACATCTTCCATGACCTTTTCATC  500

seq1  ACCATCATGCACCTAGAAAGCCGTGTGTCCAACACTGTACAGCACTCACT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCATGCACCTAGAAAGCCGTGTGTCCAACACTGTACAGCACTCACT  550

seq1  CCAGGGGAATCTGGTCTTTGCCCCCAAAGAGTTTGAATTTAGAGGAGGTG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGAATCTGGTCTTTGCCCCCAAAGAGTTTGAATTTAGAGGAGGTG  600

seq1  CTGATAAAACTCTCATCATCGGGCAGCTGTGAGACTCACAAAATACAAAC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAAAACTCTCATCATCGGGCAGCTGTGAGACTCACAAAATACAAAC  650

seq1  TGTCAGGAATTC  653
      ||||||||||||
seq2  TGTCAGGAATTC  662