BAC Information

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BAC

Clone NameB6Ng01-013L11
Chromosome10 (Build37)12 (Build37)
Map Location 5,803,273 - 5,804,419103,956,331 - 103,956,828
singlet/doubletsingletsinglet
Overlap geneGm221
Upstream geneSyne1, Esr1, LOC100041310
Downstream gene1700052N19Rik, Rmnd1, Zbtb2, Akap12, Mthfd1l, Plekhg1, Iyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013L11.bB6Ng01-013L11.g
ACCDH848463DH848464
length1,133821
definitionDH848463|Mus musculus domesticus DNA, BAC clone: B6Ng01-013L11, 5' end.DH848464|Mus musculus domesticus DNA, BAC clone: B6Ng01-013L11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,803,273 - 5,804,419)(103,956,331 - 103,956,828)
sequence
gaattcactccatagaccaagctggcctcaaacttacagatccatctgcc
tctgcctcccaattgttgggattaaaggcatgggccccctcagcctggtt
cctcagtttcttttaagtacaaaagatgaaaaggagatagtctcccatgt
acaattgtcttaaccaaagagtatctggcacaacaaattctgtccctaca
ttcttgatcctctgtgcctccttttctgttcgtgccctctctcccatgga
ccctggtagctcacaagttctgacctcttcaacattaccaacaaaacctt
tcttaaaccctggggtttttttccattcttctcatgcttatgcacccctt
cccttctatccacactgagcacagagcaagtaggcccacttactcactgt
tctgtaaaactacctcaaagttatgatgccctccccatactcaggtcctt
ggagggggacgattctctcacattatccttgcctcctctaacctactggc
actgtcccttcagggcatcaactccaccagtcatggattgctcaacagtg
gatctaggttctgaaacctgtaggatcagacagtgctgtctctggtgagc
atcagggacagtgtcaacatcactttttatcctttctttttaacttttga
ggtgctgagttaagcatatgttctactgctgtgcagcacgatcacacagg
accactgtcatacaaacagcctaccaccggcaaaggcatcatcaggcagc
aggtgactgcattgtaatgttcacagtaattagttatactttatatccta
ttggagaaaagggatcttcagatctaaaaagatctccgcatcccatcctc
tctgtcatagccccacagaggatgccacattccaccgtgtgtagtaactc
actttgcatgctctgaagatagcattacaaggcttcatgcctttgttaaa
ctgcttcctctatagcacctgctcttccccactatatcctatttaccctt
cataggataaatgatctacgtaaatctcttatcagaaatgccttaatact
tcaatagtaccatggcagctataacattattgccagtaagcagggtatct
taatggcgttcttgtctattaaactgagcttta
gaattcagagaaatagagaacagacttgcattagtgagggggaagcaggt
aggtattgctacaaagggaacaaggacacctgtggtgacagagatgtcca
cagatgacaagtgtcaatgtcagtattttagtgggatatggtacagccgg
gcccatacagtgtctcctaactgaatgtgtaggacatgaaaaactgccaa
cagcagagtgtttctcaacgcagcagccacttgtgtgacattagctttgt
ggtagatctgaagtgttgcatgccagcacttcactgcagccctgctttgg
atttattgcaggagtgcttcgtgtagcaaaggtaatgcccaaagcgcctc
agctcaggtgtgtggccacttcaagttataagctgcagcgtctgcttctt
atgcggtttaatccagacccgtgatttagtgtttgctgccatactgccct
agcatctcagtagcaggttactctctctctaggttgtcagtacacttcag
aatgcaaggctgtaaaaaacaaaacaaaacaaaaacactctgctgtttgg
ctgacttaagtttcattaaaaaacaaaacaaaaacccaaaccataagttt
accctgagattatgacaggagttcctatgatttctgaaatggccctgagt
atacttctgccattcctcattctctctctctctctttttttttttttttt
ttggatttttcgagacagggtttctctgtgtagctggaactcactttgtg
ggactcagaaatccgccctgcctctgcctcctagtgctaggattaaagca
tgcgccaccacgcccgcccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_5803273_5804419
seq2: B6Ng01-013L11.b_48_1180

seq1  GAATTCACTCCATAGACCAAGCTGGCCTCAAACTTACAGATCCATCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCATAGACCAAGCTGGCCTCAAACTTACAGATCCATCTGCC  50

seq1  TCTGCCTCCCAATTGTTGGGATTAAAGGCATGGGCCCCCTCAGCCTGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAATTGTTGGGATTAAAGGCATGGGCCCCCTCAGCCTGGTT  100

seq1  CCTCAGTTTCTTTTAAGTACAAAAGATGAAAAGGAGATAGTCTCCCATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTTTCTTTTAAGTACAAAAGATGAAAAGGAGATAGTCTCCCATGT  150

seq1  ACAATTGTCTTAACCAAAGAGTATCTGGCACAACAAATTCTGTCCCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGTCTTAACCAAAGAGTATCTGGCACAACAAATTCTGTCCCTACA  200

seq1  TTCTTGATCCTCTGTGCCTCCTTTTCTGTTCGTGCCCTCTCTCCCATGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGATCCTCTGTGCCTCCTTTTCTGTTCGTGCCCTCTCTCCCATGGA  250

seq1  CCCTGGTAGCTCACAAGTTCTGACCTCTTCAACATTACCAACAAAACCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTAGCTCACAAGTTCTGACCTCTTCAACATTACCAACAAAACCTT  300

seq1  TCTTAAACCCTGGGGTTTTTTTCCATTCTTCTCATGCTTATGCACCCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAACCCTGGGGTTTTTTTCCATTCTTCTCATGCTTATGCACCCCTT  350

seq1  CCCTTCTATCCACACTGAGCACAGAGCAAGTAGGCCCACTTACTCACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTATCCACACTGAGCACAGAGCAAGTAGGCCCACTTACTCACTGT  400

seq1  TCTGTAAAACTACCTCAAAGTTATGATGCCCTCCCCATACTCAGGTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAAACTACCTCAAAGTTATGATGCCCTCCCCATACTCAGGTCCTT  450

seq1  GGAGGGGGACGATTCTCTCACATTATCCTTGCCTCCTCTAACCTACTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGGACGATTCTCTCACATTATCCTTGCCTCCTCTAACCTACTGGC  500

seq1  ACTGTCCCTTCAGGGCATCAACTCCACCAGTCATGGATTGCTCAACAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCCTTCAGGGCATCAACTCCACCAGTCATGGATTGCTCAACAGTG  550

seq1  GATCTAGGTTCTGAAACCTGTAGGATCAGACAGTGCTGTCTCTGGTGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAGGTTCTGAAACCTGTAGGATCAGACAGTGCTGTCTCTGGTGAGC  600

seq1  ATCAGGGACAGTGTCAACATCACTTTTTATCCTTTCTTTTTAACTTTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGACAGTGTCAACATCACTTTTTATCCTTTCTTTTTAACTTTTGA  650

seq1  GGTGCTGAGTTAAGCATATGTTCTACTGCTGTGCAGCACGATCACACAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGAGTTAAGCATATGTTCTACTGCTGTGCAGCACGATCACACAGG  700

seq1  ACCACTGTCATACAAACAGCCTACCACCGGCAAAGGCATCATCAGGCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGTCATACAAACAGCCTACCACCGGCAAAGGCATCATCAGGCAGC  750

seq1  AGGTGACTGCATTGTAATGTTCACAGTAATTAGTTATACTTTATATCCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGACTGCATTGTAATGTTCACAGTAATTAGTTATACTTTATATCCTA  800

seq1  TTGGAGAAAAGGGATCTTCAGATCTAAAAAGATCTCCGCATCCCATCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAAAAGGGATCTTCAGATCTAAAAAGATCTCCGCATCCCATCCTC  850

seq1  TCTGTCATAGCCCCACAGAGGATGCCACATTCCACCGTGTGTAGTAACTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCATAGCCCCACAGAGGATGCCACATTCCACCGTGTGTAGTAACTC  900

seq1  ACTTTGCATGCTCTGAAGATAGCATTTACAAGGCTTCATGCCTTTGTTTA  950
      |||||||||||||||||||||||| ||||||||||||||||||||| |||
seq2  ACTTTGCATGCTCTGAAGATAGCA-TTACAAGGCTTCATGCCTTTG-TTA  948

seq1  AACTGCTTCCCTCTATAGCACCTGCCTCTTCCCCCACTATAATCCTATTT  1000
      |||||||| ||||||||||||||| ||||| ||||||||| |||||||||
seq2  AACTGCTT-CCTCTATAGCACCTG-CTCTT-CCCCACTAT-ATCCTATTT  994

seq1  ACCCTTCATA-GATAAATTGATCTACGTAAAATCTCCTTATCCAGAAATG  1049
      |||||||||| |||||| |||||||||| |||||| ||||| ||||||||
seq2  ACCCTTCATAGGATAAA-TGATCTACGT-AAATCT-CTTAT-CAGAAATG  1040

seq1  CCTATAATACTTCATTAGTACCATGGCAGCTATAACATCTATGCTAGTAC  1099
      ||| |||||||||| |||||||||||||||||||||||   ||| |||| 
seq2  CCT-TAATACTTCAATAGTACCATGGCAGCTATAACATTATTGCCAGTA-  1088

seq1  AGCAGGGTATCTTAATGCCTGTCTTGTCTATTAAACACTGAGCCTTTA  1147
      ||||||||||||||||| |  |||||||||||||  |||||| |||||
seq2  AGCAGGGTATCTTAATGGCGTTCTTGTCTATTAA--ACTGAG-CTTTA  1133

seq1: chr12_103956331_103956828
seq2: B6Ng01-013L11.g_633_881

seq1  AAAAAACAAAAACAAAACAAAACAAAACAAAACAACTTTACTAAAGCCTC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TAGGCTACTTTCCTGACTTGACACCCCAGCTTTTGCCTCTACCAGGACAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  CCCATTCTGAGACTATTTCCTTAGCTTCTAAAAAGTTCTTTCTCCCGCTG  150
                                                        
seq2  --------------------------------------------------  0

seq1  TGCCCCACCCCTGGTTGGTTCCTTCAGGGTTGCATCAAATCTTTATACTT  200
                                          |||     | ||  
seq2  ------------------------------------AAAAAACAAAACAA  14

seq1  CTAACTGGAGGCTGAGGGCACAGTGAGGAGTGTGGAAGCCACAGTGTGGC  250
        | |   |   | ||   ||  ||| || | ||      ||||     |
seq2  AAACCCAAACCATAAGTTTACCCTGA-GATTATG------ACAGGAGTTC  57

seq1  CAATGGCCTGGAATCTAACCAATCAGGGGCCATGACCCCCATGCTCTTGC  300
      | |||       || |    |||    |||| |||     || ||     
seq2  CTATG-------ATTTCTGAAAT----GGCCCTGA---GTATACT-----  88

seq1  TCTGTGCACCCTACCTATGATACCCACCTCCAGCCTTCTCTCTCTCTCTC  350
      ||||    || | |||                 | |||||||||||||||
seq2  TCTG----CCATTCCT-----------------CATTCTCTCTCTCTCTC  117

seq1  TTTTTTTTTT-----------TTTTCCGAGACAGGGTTTCTCTGTGTAGC  389
      ||||||||||           |||| ||||||||||||||||||||||| 
seq2  TTTTTTTTTTTTTTTTTTGGATTTTTCGAGACAGGGTTTCTCTGTGTAG-  166

seq1  CCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAG  439
                |||||||||||||||               | | ||||||
seq2  ----------CTGGAACTCACTTTG---------------TGGGACTCAG  191

seq1  AAATCTG-CCTGCCTCTGCCTCCCGAGTGCTGGGACTAAAGGCGTGTGCC  488
      ||||| | ||||||||||||| || |||||| ||| |||| || || |||
seq2  AAATCCGCCCTGCCTCTGCCT-CCTAGTGCTAGGATTAAA-GCATGCGCC  239

seq1  ACCACGCCCG  498
      ||||||||||
seq2  ACCACGCCCG  249