BAC Information

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BAC

Clone NameB6Ng01-013M04
Chromosome12 (Build37)
Map Location 53,387,599 - 53,508,821
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039525, 6030408C04Rik, Scfd1, LOC620390, LOC100039578, Coch, Strn3, Ap4s1, Hectd1, EG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627, Nubpl
Downstream geneArhgap5, Akap6, Npas3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013M04.bB6Ng01-013M04.g
ACCDH848497DH848498
length1,1651,131
definitionDH848497|Mus musculus domesticus DNA, BAC clone: B6Ng01-013M04, 5' end.DH848498|Mus musculus domesticus DNA, BAC clone: B6Ng01-013M04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,507,642 - 53,508,821)(53,387,599 - 53,388,745)
sequence
gaattcaagaaaaatattcttcataattaagggtgaaataaatcttataa
ataaaagttgtgagaatttgatagcagatttgttctgagaaagactaaag
agtaaggctagagagaaaccgcctgaatgaaaactcaaatatgtactggt
gctattaattatatacacggggtaagtgaactttaactacttcaacttct
tcctcaaatttctttgaaagactaaagaagattaaggcacacacacacac
acacacacacacacacacacacacacacaaaatcgaggcgtggtggtaca
tgcctttagtctcagcacttgggaggcagaagaaggcggttttctgagtt
tgaggccagcctggtctacagagtgagttctaggacagtcaaggctacac
agtgaaaccctgtctcgaaaaaccaatgaataaataaataaataaataaa
taaataaataaaagagaagaaggttaagtggaaggttaaggcagagccag
aacaatagctcagagggtaagggctcttgccacagagtcgggtgacctga
ggtccatctatggaactcacatggtagaagagacctgagtcctgtaagct
gtcctctaaccgctacagaggtgctgtggtgtacacacacactgaataaa
taaataaataatgtttaaaaaggaatgtgaatttaaaaataataatgtta
tcatagggtttaatctcatggtaggtatgaaatatatcataggtccaaac
atggcatgaagagtaatgagatgaaacatggggatttttactgccaaggt
tacatattttacatgaagttgttctgtattactccatgcgtgttgtgatt
acttacaaatccatagccagccatggtggcactgaggagatgcggcaggc
agatctctgtgagtttgaggccagcctggtctacattgtgattttcaagc
catccagagctacatagtaagacttggtctcacaaaaaaagttacaaaaa
aaaaaaaagcttaacattgaaatttgcaatttctagagtagttattaacc
aatacaaacaacacagcaaggtgccccccacaagctaaagtcagcagata
atttagatggatcccagaactcgccatcactaggcaggagagacctgcat
gtacaaagattgagg
gaattctgagccagagtgcagggatttcaggttttctgcacaactatgct
ctccagtgctgatggagtcccgtgactgtctccggaaatgctttcgtgat
agtctacagtaaagcacctgcagggaaggaggggaaaggtgactcccttt
ccttctggctctctccattttaagtcttgatagcccaggttcttctaggg
agtattttaggatattctgtacatgacaaaataacgtaagaatgtaataa
aaatagacatagaataattaagatcagatggagcccagagtaaagtcagc
aaacaaattgcatgccattaaggaacttaaatatgctatgaattttctag
cagccaaaggaaagcagcatgataccaattaagaccctgtccatgtgcac
atggttagaacaggctgcttgctcacgagaagccctgccgaggccagaca
catatatactttcactagattcctatgaggaggaaactatattaaacaca
ctcccctcttctttactctgagggaaaggttctccttctagtggcctcaa
caaaagccaaggcatagaaccagagggcagatagaacatgagccctgcag
tgcttctgtctgtgcgcctctccacggacatctttagagctaatagaaat
agggctttgaaaactttggttcaagccaaaaggctggctcagtggtaaag
cacttgttgtataagcctaacaacctgagttcaatcctcagaacccatgt
gaaggtgaaaggagaaccgactcacacatctgacctctcatctccacatg
tgcgtcatgcagtgcacacctgtgctcacaagtgcatatgcaataataat
aaagaacagttttaaagtcttaggcacatggattagcatcaggtctcata
cttctctatcctgctttccttccacacaaactgtatgatatttgtttgtt
tggtatgggaagacccatactttctctatcttcaagagaccatgacacag
gataatgttctgggatgcttttaggtttttgtcctctgagaggagccttg
aagaagtaagaatatatattagttagagtcaaggtgctctactcaggaga
ccttcttttccatgctacgggagtggtgagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_53507642_53508821
seq2: B6Ng01-013M04.b_44_1208 (reverse)

seq1  CCTC-ATCTTTGTTTCAC-TGCAGGGCTCCTCTCCTGCCTTAAGTGAATG  48
      |||| ||||||||   || ||||||    |||||||||||  |||| |||
seq2  CCTCAATCTTTGT---ACATGCAGG---TCTCTCCTGCCT--AGTG-ATG  41

seq1  GCGAGTTCTTGAATTCCATCTTAATTATCCTGCTGACTTTTTAGCTTTGT  98
      ||||||||| | | ||||||| |||||| ||||||||  ||||||||   
seq2  GCGAGTTCTGGGA-TCCATCTAAATTAT-CTGCTGAC--TTTAGCTTGTG  87

seq1  GTGTGCACC-TGCTGTTGTTGTTTGTATTTGGTTTAATAACTACTCTAGA  147
      | | ||||| ||||| |||||||||||||  | |||||||||||||||||
seq2  GGGGGCACCTTGCTG-TGTTGTTTGTATT--GGTTAATAACTACTCTAGA  134

seq1  AATTGCAAATTTCAATGTTAAGCTTTTTTTTTTTTTGTAACTTTTTTTTG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  AATTGCAAATTTCAATGTTAAGCTTTTTTTTTTTTTGTAACTTTTTTT--  182

seq1  TTGAGACCAAGTCTTACTATGTAGCTCTGGATGGCTTGAAAATCACAATG  247
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACCAAGTCTTACTATGTAGCTCTGGATGGCTTGAAAATCACAATG  232

seq1  TAGACCAGGCTGGCCTCAAACTCACAGAGATCTGCCTGCCGCATCTCCTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGGCTGGCCTCAAACTCACAGAGATCTGCCTGCCGCATCTCCTC  282

seq1  AGTGCCACCATGGCTGGCTATGGATTTGTAAGTAATCACAACACGCATGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCACCATGGCTGGCTATGGATTTGTAAGTAATCACAACACGCATGG  332

seq1  AGTAATACAGAACAACTTCATGTAAAATATGTAACCTTGGCAGTAAAAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATACAGAACAACTTCATGTAAAATATGTAACCTTGGCAGTAAAAAT  382

seq1  CCCCATGTTTCATCTCATTACTCTTCATGCCATGTTTGGACCTATGATAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGTTTCATCTCATTACTCTTCATGCCATGTTTGGACCTATGATAT  432

seq1  ATTTCATACCTACCATGAGATTAAACCCTATGATAACATTATTATTTTTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATACCTACCATGAGATTAAACCCTATGATAACATTATTATTTTTA  482

seq1  AATTCACATTCCTTTTTAAACATTATTTATTTATTTATTCAGTGTGTGTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACATTCCTTTTTAAACATTATTTATTTATTTATTCAGTGTGTGTG  532

seq1  TACACCACAGCACCTCTGTAGCGGTTAGAGGACAGCTTACAGGACTCAGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCACAGCACCTCTGTAGCGGTTAGAGGACAGCTTACAGGACTCAGG  582

seq1  TCTCTTCTACCATGTGAGTTCCATAGATGGACCTCAGGTCACCCGACTCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTACCATGTGAGTTCCATAGATGGACCTCAGGTCACCCGACTCT  632

seq1  GTGGCAAGAGCCCTTACCCTCTGAGCTATTGTTCTGGCTCTGCCTTAACC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAAGAGCCCTTACCCTCTGAGCTATTGTTCTGGCTCTGCCTTAACC  682

seq1  TTCCACTTAACCTTCTTCTCTTTTATTTATTTATTTATTTATTTATTTAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTTAACCTTCTTCTCTTTTATTTATTTATTTATTTATTTATTTAT  732

seq1  TTATTCATTGGTTTTTCGAGACAGGGTTTCACTGTGTAGCCTTGACTGTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCATTGGTTTTTCGAGACAGGGTTTCACTGTGTAGCCTTGACTGTC  782

seq1  CTAGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAAACCGCCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAAACCGCCT  832

seq1  TCTTCTGCCTCCCAAGTGCTGAGACTAAAGGCATGTACCACCACGCCTCG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGCCTCCCAAGTGCTGAGACTAAAGGCATGTACCACCACGCCTCG  882

seq1  ATTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCTT  932

seq1  AATCTTCTTTAGTCTTTCAAAGAAATTTGAGGAAGAAGTTGAAGTAGTTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCTTTAGTCTTTCAAAGAAATTTGAGGAAGAAGTTGAAGTAGTTA  982

seq1  AAGTTCACTTACCCCGTGTATATAATTAATAGCACCAGTACATATTTGAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCACTTACCCCGTGTATATAATTAATAGCACCAGTACATATTTGAG  1032

seq1  TTTTCATTCAGGCGGTTTCTCTCTAGCCTTACTCTTTAGTCTTTCTCAGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTCAGGCGGTTTCTCTCTAGCCTTACTCTTTAGTCTTTCTCAGA  1082

seq1  ACAAATCTGCTATCAAATTCTCACAACTTTTATTTATAAGATTTATTTCA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCTGCTATCAAATTCTCACAACTTTTATTTATAAGATTTATTTCA  1132

seq1  CCCTTAATTATGAAGAATATTTTTCTTGAATTC  1180
      |||||||||||||||||||||||||||||||||
seq2  CCCTTAATTATGAAGAATATTTTTCTTGAATTC  1165

seq1: chr12_53387599_53388745
seq2: B6Ng01-013M04.g_67_1197

seq1  GAATTCTGAGCCAGAGTGCAGGGATTTCAGGTTTTCTGCACAACTATGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGCCAGAGTGCAGGGATTTCAGGTTTTCTGCACAACTATGCT  50

seq1  CTCCAGTGCTGATGGAGTCCCGTGACTGTCTCCGGAAATGCTTTCGTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTGCTGATGGAGTCCCGTGACTGTCTCCGGAAATGCTTTCGTGAT  100

seq1  AGTCTACAGTAAAGCACCTGCAGGGAAGGAGGGGAAAGGTGACTCCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTACAGTAAAGCACCTGCAGGGAAGGAGGGGAAAGGTGACTCCCTTT  150

seq1  CCTTCTGGCTCTCTCCATTTTAAGTCTTGATAGCCCAGGTTCTTCTAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGGCTCTCTCCATTTTAAGTCTTGATAGCCCAGGTTCTTCTAGGG  200

seq1  AGTATTTTAGGATATTCTGTACATGACAAAATAACGTAAGAATGTAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTAGGATATTCTGTACATGACAAAATAACGTAAGAATGTAATAA  250

seq1  AAATAGACATAGAATAATTAAGATCAGATGGAGCCCAGAGTAAAGTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGACATAGAATAATTAAGATCAGATGGAGCCCAGAGTAAAGTCAGC  300

seq1  AAACAAATTGCATGCCATTAAGGAACTTAAATATGCTATGAATTTTCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATTGCATGCCATTAAGGAACTTAAATATGCTATGAATTTTCTAG  350

seq1  CAGCCAAAGGAAAGCAGCATGATACCAATTAAGACCCTGTCCATGTGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAAAGGAAAGCAGCATGATACCAATTAAGACCCTGTCCATGTGCAC  400

seq1  ATGGTTAGAACAGGCTGCTTGCTCACGAGAAGCCCTGCCGAGGCCAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTAGAACAGGCTGCTTGCTCACGAGAAGCCCTGCCGAGGCCAGACA  450

seq1  CATATATACTTTCACTAGATTCCTATGAGGAGGAAACTATATTAAACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATACTTTCACTAGATTCCTATGAGGAGGAAACTATATTAAACACA  500

seq1  CTCCCCTCTTCTTTACTCTGAGGGAAAGGTTCTCCTTCTAGTGGCCTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTCTTCTTTACTCTGAGGGAAAGGTTCTCCTTCTAGTGGCCTCAA  550

seq1  CAAAAGCCAAGGCATAGAACCAGAGGGCAGATAGAACATGAGCCCTGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCCAAGGCATAGAACCAGAGGGCAGATAGAACATGAGCCCTGCAG  600

seq1  TGCTTCTGTCTGTGCGCCTCTCCACGGACATCTTTAGAGCTAATAGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTGTCTGTGCGCCTCTCCACGGACATCTTTAGAGCTAATAGAAAT  650

seq1  AGGGCTTTGAAAACTTTGGTTCAAGCCAAAAGGCTGGCTCAGTGGTAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTTGAAAACTTTGGTTCAAGCCAAAAGGCTGGCTCAGTGGTAAAG  700

seq1  CACTTGTTGTATAAGCCTAACAACCTGAGTTCAATCCTCAGAACCCATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGTTGTATAAGCCTAACAACCTGAGTTCAATCCTCAGAACCCATGT  750

seq1  GAAGGTGAAAGGAGAACCGACTCACACATCTGACCTCTCATCTCCACATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGAAAGGAGAACCGACTCACACATCTGACCTCTCATCTCCACATG  800

seq1  TGCGTCATGCAGTGCACACCTGTGCTCACAAGTGCATATGCAATAATAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTCATGCAGTGCACACCTGTGCTCACAAGTGCATATGCAATAATAAT  850

seq1  AAAGAACAAGTTTTAAAGTCTTAGGCACATGGATTAGCATCAGGGTTCTC  900
      ||||||| ||||||||||||||||||||||||||||||||||||  ||||
seq2  AAAGAAC-AGTTTTAAAGTCTTAGGCACATGGATTAGCATCAGG--TCTC  897

seq1  ATACTTCTCTATCCTGCTTTCCTTCCACCACAAACTGTATGATATTTTTG  950
      ||||||||||||||||||||||||||| ||||||||||||||||  ||||
seq2  ATACTTCTCTATCCTGCTTTCCTTCCA-CACAAACTGTATGATA--TTTG  944

seq1  TTTGTTTGGTTATGGGAAGAACCCATAACTTTCCTCTAATTCTTCAAAGA  1000
      ||||||||| ||||||||| |||||| ||||| |||||  ||||| ||||
seq2  TTTGTTTGG-TATGGGAAG-ACCCAT-ACTTT-CTCTA--TCTTC-AAGA  987

seq1  GACCATGACACAGGATAATGTTCTGGGATGCTTTTAAGTGTTTGT-CTCT  1049
      |||||||||||||||||||||||||||||||||||| || ||||| ||||
seq2  GACCATGACACAGGATAATGTTCTGGGATGCTTTTAGGTTTTTGTCCTCT  1037

seq1  GAGAGGAGCCTTGAAAGATGTAAAAGATTATATA-TAG-TAGAGTCAAGG  1097
      ||||||||||||| |||| ||  |||| |||||| ||| |||||||||||
seq2  GAGAGGAGCCTTG-AAGAAGT--AAGAATATATATTAGTTAGAGTCAAGG  1084

seq1  TGCCCCTACCCAGGAGTACCTCTCTTCCCATGCTAGCGGGAGTGGTGAGC  1147
      || | |||| |||||| ||||   || |||||||| ||||||||||||||
seq2  TG-CTCTACTCAGGAG-ACCTTCTTTTCCATGCTA-CGGGAGTGGTGAGC  1131