BAC Information

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BAC

Clone NameB6Ng01-013N17
Chromosome12 (Build37)
Map Location 85,607,092 - 85,759,775
singlet/doubletdoublet
Overlap geneEG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2
Upstream geneDpf3, Wdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik
Downstream geneAldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013N17.bB6Ng01-013N17.g
ACCDH848565DH848566
length8391,068
definitionDH848565|Mus musculus domesticus DNA, BAC clone: B6Ng01-013N17, 5' end.DH848566|Mus musculus domesticus DNA, BAC clone: B6Ng01-013N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,607,092 - 85,607,741)(85,758,693 - 85,759,775)
sequence
gaattccagggactgaggttacaggtgtttgtgagccacctagtgtgggt
gctggggaccaaacccagatcctctacaagaaaagcaagtgctcttgacc
actgagtcatctctccagcccccactttttctattcttaaaggtttattt
gggtttttaaaactttttattgattctttgtgagtttcacatcatgcaca
gcagctcatcttcctttgcccttgcagcctctccctcaaagaaaacacac
acaccatcaccaccaccatcaccaccaccatcaccaccaccaccaccacc
accaccaccaccaccaccaccatcaccaccaccaccaacaacaacaacaa
aacaaagcatagaaaaatctcatcgtggaagctgtagtatgtcacagtgt
gtcccaccatatgtccctctatctacacatctttatttgccaatgttcat
tgcaatgagttgttggtctggtttaagctctctggtttctgtgacaccat
caatactagatcctcatcgggactcctccctgttgccctgtgtcatgaag
atcgtgcagctttggaacagcaggactggcccttccatgagtcccaacct
ttcgccaatgatagagatctgggggtaggtcaactcacagctctggatcc
tggcctgggtggttgctgaactggtcagtcaccagcttaaccacactacc
agggcaagctctccagcactgctttcgctaggccactcaatgccaccacg
gtcagcagagttagggccagctctctttctctcatgctctttgggccagt
caccagcacctagacctccagagccagctccaccgtgct
gaattctatacaaataatctcttacctatatatacatcacaattttaagt
atatggggccctcatatctgcctcatttcttctacatttcagattccaca
aatctgccctatttttttccagtaaggcactaacttttcccttgaattgt
aagtgttcctcagcagccctctttaaatagtctgaaatctacctctctaa
taggtggcggcattgttctttaaaaaagaaagatcacaccagggtactag
agtatgagctagttctttatttagattcagaaaatatagctataaacagg
agagttctttaagttaactgtattgattccatctccagcatgtcatataa
aacaaaacttggatattcttcctagaaaacttagtatttcttcaactgtg
attgctttggtttgagatgaccaaaacaaaaagtactttgagatttgaca
attatgggacatctaagtaatggcaattagatcccatcggcgtcttctgg
ggtgctggaagcaccaccctctgcttttcgatacttctccagtttagcaa
tcagttctttcgcaggattgaaaaccccatgggtctgttgctcacaaaca
tagcatcgtggagtggttcggaaatgctgcagtgcacaggtctcacagaa
ataatgtttacacttggtgacaaccggattctggaaggtttggcgacaga
tgaaacatttgaatggtatctcctcatcatcactttctacttcatagttt
tcgtctcatacacaccgtagcggccctcatcgagttcacgttctatttgc
catccgtgcttgtaatctgacggtcatggaggaatttgcagcttgtctcc
aaagccacagagcagtctcctgtagtccttacaattattcaggttggtaa
tccacgcacagtagcgcgtagatgtttcagggctcgtatggggccttttc
ttaccatgccagagagccatgcaatggatgtatctggcttcatgtattct
ctgtatatttatttccacagaagatttgtcatcctcttgcctcctagccc
tccctggatttctgactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_85607092_85607741
seq2: B6Ng01-013N17.b_48_697

seq1  GAATTCCAGGGACTGAGGTTACAGGTGTTTGTGAGCCACCTAGTGTGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGACTGAGGTTACAGGTGTTTGTGAGCCACCTAGTGTGGGT  50

seq1  GCTGGGGACCAAACCCAGATCCTCTACAAGAAAAGCAAGTGCTCTTGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGACCAAACCCAGATCCTCTACAAGAAAAGCAAGTGCTCTTGACC  100

seq1  ACTGAGTCATCTCTCCAGCCCCCACTTTTTCTATTCTTAAAGGTTTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTCATCTCTCCAGCCCCCACTTTTTCTATTCTTAAAGGTTTATTT  150

seq1  GGGTTTTTAAAACTTTTTATTGATTCTTTGTGAGTTTCACATCATGCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTTAAAACTTTTTATTGATTCTTTGTGAGTTTCACATCATGCACA  200

seq1  GCAGCTCATCTTCCTTTGCCCTTGCAGCCTCTCCCTCAAAGAAAACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTCATCTTCCTTTGCCCTTGCAGCCTCTCCCTCAAAGAAAACACAC  250

seq1  ACACCATCACCACCACCATCACCACCACCATCACCACCACCACCACCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATCACCACCACCATCACCACCACCATCACCACCACCACCACCACC  300

seq1  ACCACCACCACCACCACCACCATCACCACCACCACCAACAACAACAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCACCACCACCACCACCATCACCACCACCACCAACAACAACAACAA  350

seq1  AACAAAGCATAGAAAAATCTCATCGTGGAAGCTGTAGTATGTCACAGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGCATAGAAAAATCTCATCGTGGAAGCTGTAGTATGTCACAGTGT  400

seq1  GTCCCACCATATGTCCCTCTATCTACACATCTTTATTTGCCAATGTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCACCATATGTCCCTCTATCTACACATCTTTATTTGCCAATGTTCAT  450

seq1  TGCAATGAGTTGTTGGTCTGGTTTAAGCTCTCTGGTTTCTGTGACACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGAGTTGTTGGTCTGGTTTAAGCTCTCTGGTTTCTGTGACACCAT  500

seq1  CAATACTAGATCCTCATCGGGACTCCTCCCTGTTGCCCTGTGTCATGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACTAGATCCTCATCGGGACTCCTCCCTGTTGCCCTGTGTCATGAAG  550

seq1  ATCGTGCAGCTTTGGAACAGCAGGACTGGCCCTTCCATGAGTCCCAACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTGCAGCTTTGGAACAGCAGGACTGGCCCTTCCATGAGTCCCAACCT  600

seq1  TTCGCCAATGATAGAGATCTGGGGGTAGGTCAACTCACAGCTCTGGATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCCAATGATAGAGATCTGGGGGTAGGTCAACTCACAGCTCTGGATCC  650

seq1: chr12_85758693_85759775
seq2: B6Ng01-013N17.g_67_1134 (reverse)

seq1  CAGTCAGAAAATCCAGGAGGAGCTGAGAGGCAAGGAGGATGACAAAATCT  50
      ||||||| |||||||||  | |||  ||||||| ||||||||| ||||||
seq2  CAGTCAG-AAATCCAGGGAGGGCTAGGAGGCAA-GAGGATGAC-AAATCT  47

seq1  ATCGTGGAATTAATAATTACCAGA-AATACATGAAGCCCAAGGATACATC  99
         |||||| ||  |||   |||| |||||||||||||    ||||||||
seq2  TCTGTGGAAATA--AATATACAGAGAATACATGAAGCC---AGATACATC  92

seq1  CATGGGCAATGCCTCCTCTGGCATGGTAAGAAAGGGCCCCATCCGAGCCC  149
      ||| |   ||| || |||||||||||||||||| |||||||| |||||||
seq2  CATTG--CATGGCT-CTCTGGCATGGTAAGAAAAGGCCCCATACGAGCCC  139

seq1  CTGAACATCTACGCGCTACTGTGCGCTGGGATTACCAGCCTG-ATATTTG  198
         ||||||||||||||||||||||   ||||||||| |||| ||| |||
seq2  TGAAACATCTACGCGCTACTGTGCG--TGGATTACCAACCTGAATAATTG  187

seq1  TAAGGACTACAAGGAGACTGGCTTCTGTGGCTTTGGAGAC-AGCTGCAAA  247
      |||||||||| |||||||||   ||||||||||||||||| |||||||||
seq2  TAAGGACTAC-AGGAGACTG--CTCTGTGGCTTTGGAGACAAGCTGCAAA  234

seq1  TTCCTCCATGACCGTTCAGATTACAAGCACGGATGGCAGATAGAACGTGA  297
      |||||||||||||| ||||||||||||||||||||||| |||||||||||
seq2  TTCCTCCATGACCG-TCAGATTACAAGCACGGATGGCAAATAGAACGTGA  283

seq1  ACTCGATGAGGGCCGCTACGGTGTGTATGAAGACGAAAACTATGAAGTAG  347
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACTCGATGAGGGCCGCTACGGTGTGTATG-AGACGAAAACTATGAAGTAG  332

seq1  AAAGTGATGATGAGGAGATACCATTCAAATGTTTCATCTGTCGCCAAACC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGATGATGAGGAGATACCATTCAAATGTTTCATCTGTCGCCAAACC  382

seq1  TTCCAGAATCCGGTTGTCACCAAGTGTAAACATTATTTCTGTGAGACCTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAATCCGGTTGTCACCAAGTGTAAACATTATTTCTGTGAGACCTG  432

seq1  TGCACTGCAGCATTTCCGAACCACTCCACGATGCTATGTTTGTGAGCAAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGCAGCATTTCCGAACCACTCCACGATGCTATGTTTGTGAGCAAC  482

seq1  AGACCCATGGGGTTTTCAATCCTGCGAAAGAACTGATTGCTAAACTGGAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCATGGGGTTTTCAATCCTGCGAAAGAACTGATTGCTAAACTGGAG  532

seq1  AAGTATCGAAAAGCAGAGGGTGGTGCTTCCAGCACCCCAGAAGACGCCGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCGAAAAGCAGAGGGTGGTGCTTCCAGCACCCCAGAAGACGCCGA  582

seq1  TGGGATCTAATTGCCATTACTTAGATGTCCCATAATTGTCAAATCTCAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCTAATTGCCATTACTTAGATGTCCCATAATTGTCAAATCTCAAA  632

seq1  GTACTTTTTGTTTTGGTCATCTCAAACCAAAGCAATCACAGTTGAAGAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTTTGTTTTGGTCATCTCAAACCAAAGCAATCACAGTTGAAGAAA  682

seq1  TACTAAGTTTTCTAGGAAGAATATCCAAGTTTTGTTTTATATGACATGCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGTTTTCTAGGAAGAATATCCAAGTTTTGTTTTATATGACATGCT  732

seq1  GGAGATGGAATCAATACAGTTAACTTAAAGAACTCTCCTGTTTATAGCTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGGAATCAATACAGTTAACTTAAAGAACTCTCCTGTTTATAGCTA  782

seq1  TATTTTCTGAATCTAAATAAAGAACTAGCTCATACTCTAGTACCCTGGTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTGAATCTAAATAAAGAACTAGCTCATACTCTAGTACCCTGGTG  832

seq1  TGATCTTTCTTTTTTAAAGAACAATGCCGCCACCTATTAGAGAGGTAGAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTTCTTTTTTAAAGAACAATGCCGCCACCTATTAGAGAGGTAGAT  882

seq1  TTCAGACTATTTAAAGAGGGCTGCTGAGGAACACTTACAATTCAAGGGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACTATTTAAAGAGGGCTGCTGAGGAACACTTACAATTCAAGGGAA  932

seq1  AAGTTAGTGCCTTACTGGAAAAAAATAGGGCAGATTTGTGGAATCTGAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGTGCCTTACTGGAAAAAAATAGGGCAGATTTGTGGAATCTGAAA  982

seq1  TGTAGAAGAAATGAGGCAGATATGAGGGCCCCATATACTTAAAATTGTGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAGAAATGAGGCAGATATGAGGGCCCCATATACTTAAAATTGTGA  1032

seq1  TGTATATATAGGTAAGAGATTATTTGTATAGAATTC  1083
      ||||||||||||||||||||||||||||||||||||
seq2  TGTATATATAGGTAAGAGATTATTTGTATAGAATTC  1068