BAC Information

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BAC

Clone NameB6Ng01-013P10
Chromosome12 (Build37)
Map Location 17,122,678 - 17,220,980
singlet/doubletdoublet
Overlap geneKcnf1
Upstream geneLpin1, Ntsr2, Greb1, E2f6, Rock2, Pqlc3, 2410004P03Rik, EG668514
Downstream geneLOC100043299, Pdia6, Atp6v1c2, Nol10, LOC672501, Odc1, LOC100042522, LOC100042528, Hpcal1, EG668525, LOC673341, EG245297, LOC100042573, LOC668539
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013P10.bB6Ng01-013P10.g
ACCDH848645DH848646
length1,1861,036
definitionDH848645|Mus musculus domesticus DNA, BAC clone: B6Ng01-013P10, 5' end.DH848646|Mus musculus domesticus DNA, BAC clone: B6Ng01-013P10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,219,774 - 17,220,980)(17,122,678 - 17,123,717)
sequence
gaattcagtattctgcaagggcagcaagtgctcataactgtagggagaat
atcttatgtttgtatggttgcagcacctgtcaataataaatctgatggcc
tatggcttaggcaggaaataggaggtgggacatttggtaggagagagaat
tctgagatagagccaggcatggggagatctgcccaggaagatttgaggag
atgaacacatggaacctgagcacaggtagtcagtcatgtggcagaatgta
ggttaaaataaatgggttatctaagttatgatctagtcagagtagagcct
atatgaccaagctatttgtaaatatactttgagtttgaggaccatgaagc
agggaggtagaaccaggccctaacttctacacttaaccactgagccattt
ctccagtctcctgaccctttttctctagaagttgtttttttctcagggga
atacacacacacacacacacacacacacacacacacacacacacacacac
acacacacacacacagtcacaggaccagaaatgaagctaggacagtgtct
gcccccttcacttgcatgtaaatgctactaagtgctctctttggcagcaa
gatttttactttgtttctgctcactgtggcacccttggcacttattcagg
cagagtggatgctcagaaagtgttcactgaatgaataaaggagtcattta
caataaaacatctctgaagaaaccataactctttcagaataaggcccaac
ccaagtgggcctcattggtattctgtcacccttcaggaaggaagttacaa
gaggggattctcaatgtgccgtcacctttggtgaattactggactgacac
tggcttaagggagtagaattgtaaacatgcttcctggagtgttactaatc
ttcttaccttctgagctttacctctcttgatgaatagtgaaattagcaac
atataaattcttttttagaatgatttgttttagtactcatgctgttgtat
gtgccacatgtgtgtgtactcaagatgttcaggagagggtgtccgggtct
tgtcttgctagttttggtgtcactgacacatctgattatcactataatgg
tcttccgttgaggaaatgcttccttgaaattttagcagcatttcctaata
ggatcagggaagcctgttgtgggtgggacaatcttt
gaattccattttggttctgacaacattcacatctctttcacagccctcaa
gaatggcatgaatgggtagtcaccattgccatgagctcacacaagtcgct
tggcaatctaagacttctttggtttctgaagaggttctccagggccggat
agagtaaatggcccaggacaaacagagaatcttcacattcatattttttt
tcttgataagacaaaaaaaaaaatcacaaggggtcaccatgaagattgct
ttcgactctgacatcaggtgactgtagtctcatgaagcagaggcacagtg
agaacttttactgagagttagaataaactagcttcctggccctattggaa
aggaatctttcccatgtctgaggtagagggtgatgaagagaactcatcaa
taatcccagaaggagcacagagaggatgtggggccctctcccctgccagt
ggaaaaagggaattaggagttcctgcatcctgccaagcaagatggagacc
atgtttctgcttggatctttcactccagcaggcacatatgctcccatcca
tcacccatttgaaaagaagacatatcatgtgagttcctttgtgattgggt
tatctcactcaggatgatgccctccagttccatccatttgcctaggaatt
tcataaattcattctttttaatagctgagtagtactccattgtgtaaatg
taccacattttttgtatccattcctctgttgagggcatctgggtttcttt
ccagcttctggctattataaacaaggctgctatgaacatagtggagcatg
tgtcctttcttacaagttggaacatcttctggatacatgcccaggagagg
tattgcgtgatcctccggtagtactatgtccattttctgaggaaccgcca
gactgatttccagagtggttatacaagcttgcaatccacaacaatgagga
gtgttcctctttctctacatcctcgcagcatcttgctgtcactgaatttt
tgatcttacccattctgactggtgtgaggtacgatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_17219774_17220980
seq2: B6Ng01-013P10.b_45_1230 (reverse)

seq1  AAAGATGGTCCCACCCACAAAGGGCCCTTCCCCCTTGATCACTAATTGAG  50
      |||||| |||||||||||||  ||  ||||||   ||||| |||  | ||
seq2  AAAGATTGTCCCACCCACAACAGG--CTTCCC---TGATC-CTA--TTAG  42

seq1  AAAATGCCTTACAGTTGGATCTCATGGAGGCATTTCCTCAACTGAAGCTC  100
       ||||||  | |  |   || ||| ||| ||||||||||||| ||||  |
seq2  GAAATGC--TGC--TAAAATTTCAAGGAAGCATTTCCTCAACGGAAGACC  88

seq1  CTTTTTCTGTGATAACTCCAGCTGTGTCAAGTTGACA-CAAAACTAGCCA  149
       || |   |||||||   ||| |||||||   ||||| ||||||||| ||
seq2  ATTAT--AGTGATAA--TCAGATGTGTCA--GTGACACCAAAACTAG-CA  131

seq1  GGACAGGACCC-GACACCCTCTCCTGAACATCTTGAGTACCACACACATG  198
       |||| ||||| ||||||||||||||||||||||||||| ||||||||||
seq2  AGACAAGACCCGGACACCCTCTCCTGAACATCTTGAGTA-CACACACATG  180

seq1  TGGCACATACAACAGCATGAGTACTAAAACAAATCATTCTAAAAAAAGAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  TGGCACATACAACAGCATGAGTACTAAAACAAATCATTCTAAAAAAGAAT  230

seq1  TTATATGTTGCTAAATTTCAACTATTCATCAAGAAGAGGTAAAGCTCAGA  298
      |||||||||||| |||||| ||||||||||||| ||||||||||||||||
seq2  TTATATGTTGCT-AATTTC-ACTATTCATCAAG-AGAGGTAAAGCTCAGA  277

seq1  AGGTAAGAGATTTAGTAAACACTCCAGGAAGCATGTTTACATTTCTACTC  348
      ||||||||   ||||| |||||||||||||||||||||||| ||||||||
seq2  AGGTAAGAAGATTAGT-AACACTCCAGGAAGCATGTTTACAATTCTACTC  326

seq1  CCTTAAGCCCAGTGTCAGTCCCAGTAATTCACC-AAGGTGACGGCACATT  397
      ||||||| ||||||||||| ||||||||||||| ||||||||||||||||
seq2  CCTTAAG-CCAGTGTCAGT-CCAGTAATTCACCAAAGGTGACGGCACATT  374

seq1  GAGAAT-CCCTCTTGTAACTTCCTTCCTGAA-GGTGACAGAATACCAATG  445
      |||||| |||||||||||||||||||||||| ||||||||||||||||||
seq2  GAGAATCCCCTCTTGTAACTTCCTTCCTGAAGGGTGACAGAATACCAATG  424

seq1  AGGCCCACTTGGGTTGGGCCTTATTCTGAAAGAGTTATGGTTTCTTCAGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCACTTGGGTTGGGCCTTATTCTGAAAGAGTTATGGTTTCTTCAGA  474

seq1  GATGTTTTATTCTAAATGACTCCTTTATTCATTCAGTGAACACTTTCTGA  545
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTTATTGTAAATGACTCCTTTATTCATTCAGTGAACACTTTCTGA  524

seq1  GCATCCACTCTGCCTGAATAAGTGCCAAGGGTGCCACAGTGAGCAGAAAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCACTCTGCCTGAATAAGTGCCAAGGGTGCCACAGTGAGCAGAAAC  574

seq1  AAAGTAAAAATCTTGCTGCCAAAGAGAGCACTTAGTAGCATTTACATGCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAAAATCTTGCTGCCAAAGAGAGCACTTAGTAGCATTTACATGCA  624

seq1  AGTGAAGGGGGCAGACACTGTCCTAGCTTCATTTCTGGTCCTGTGACTGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGGGGGCAGACACTGTCCTAGCTTCATTTCTGGTCCTGTGACTGT  674

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  724

seq1  GTGTGTGTGTATTCCCCTGAGAAAAAAACAACTTCTAGAGAAAAAGGGTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTATTCCCCTGAGAAAAAAACAACTTCTAGAGAAAAAGGGTC  774

seq1  AGGAGACTGGAGAAATGGCTCAGTGGTTAAGTGTAGAAGTTAGGGCCTGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACTGGAGAAATGGCTCAGTGGTTAAGTGTAGAAGTTAGGGCCTGG  824

seq1  TTCTACCTCCCTGCTTCATGGTCCTCAAACTCAAAGTATATTTACAAATA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCTCCCTGCTTCATGGTCCTCAAACTCAAAGTATATTTACAAATA  874

seq1  GCTTGGTCATATAGGCTCTACTCTGACTAGATCATAACTTAGATAACCCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTCATATAGGCTCTACTCTGACTAGATCATAACTTAGATAACCCA  924

seq1  TTTATTTTAACCTACATTCTGCCACATGACTGACTACCTGTGCTCAGGTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTAACCTACATTCTGCCACATGACTGACTACCTGTGCTCAGGTT  974

seq1  CCATGTGTTCATCTCCTCAAATCTTCCTGGGCAGATCTCCCCATGCCTGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGTTCATCTCCTCAAATCTTCCTGGGCAGATCTCCCCATGCCTGG  1024

seq1  CTCTATCTCAGAATTCTCTCTCCTACCAAATGTCCCACCTCCTATTTCCT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCTCAGAATTCTCTCTCCTACCAAATGTCCCACCTCCTATTTCCT  1074

seq1  GCCTAAGCCATAGGCCATCAGATTTATTATTGACAGGTGCTGCAACCATA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAGCCATAGGCCATCAGATTTATTATTGACAGGTGCTGCAACCATA  1124

seq1  CAAACATAAGATATTCTCCCTACAGTTATGAGCACTTGCTGCCCTTGCAG  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATAAGATATTCTCCCTACAGTTATGAGCACTTGCTGCCCTTGCAG  1174

seq1  AATACTGAATTC  1207
      ||||||||||||
seq2  AATACTGAATTC  1186

seq1: chr12_17122678_17123717
seq2: B6Ng01-013P10.g_64_1099

seq1  GAATTCCATTTTGGTTCTGACAACATTCACATCTCTTTCACAGCCCTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTTGGTTCTGACAACATTCACATCTCTTTCACAGCCCTCAA  50

seq1  GAATGGCATGAATGGGTAGTCACCATTGCCATGAGCTCACACAAGTCGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGCATGAATGGGTAGTCACCATTGCCATGAGCTCACACAAGTCGCT  100

seq1  TGGCAATCTAAGACTTCTTTGGTTTCTGAAGAGGTTCTCCAGGGCCGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATCTAAGACTTCTTTGGTTTCTGAAGAGGTTCTCCAGGGCCGGAT  150

seq1  AGAGTAAATGGCCCAGGACAAACAGAGAATCTTCACATTCATATTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAATGGCCCAGGACAAACAGAGAATCTTCACATTCATATTTTTTT  200

seq1  TCTTGATAAGACAAAAAAAAAAATCACAAGGGGTCACCATGAAGATTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATAAGACAAAAAAAAAAATCACAAGGGGTCACCATGAAGATTGCT  250

seq1  TTCGACTCTGACATCAGGTGACTGTAGTCTCATGAAGCAGAGGCACAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGACTCTGACATCAGGTGACTGTAGTCTCATGAAGCAGAGGCACAGTG  300

seq1  AGAACTTTTACTGAGAGTTAGAATAAACTAGCTTCCTGGCCCTATTGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTTTACTGAGAGTTAGAATAAACTAGCTTCCTGGCCCTATTGGAA  350

seq1  AGGAATCTTTCCCATGTCTGAGGTAGAGGGTGATGAAGAGAACTCATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCTTTCCCATGTCTGAGGTAGAGGGTGATGAAGAGAACTCATCAA  400

seq1  TAATCCCAGAAGGAGCACAGAGAGGATGTGGGGCCCTCTCCCCTGCCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCAGAAGGAGCACAGAGAGGATGTGGGGCCCTCTCCCCTGCCAGT  450

seq1  GGAAAAAGGGAATTAGGAGTTCCTGCATCCTGCCAAGCAAGATGGAGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAGGGAATTAGGAGTTCCTGCATCCTGCCAAGCAAGATGGAGACC  500

seq1  ATGTTTCTGCTTGGATCTTTCACTCCAGCAGGCACATATGCTCCCATCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCTGCTTGGATCTTTCACTCCAGCAGGCACATATGCTCCCATCCA  550

seq1  TCACCCATTTGAAAAGAAGACATATCATGTGAGTTCCTTTGTGATTGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCATTTGAAAAGAAGACATATCATGTGAGTTCCTTTGTGATTGGGT  600

seq1  TATCTCACTCAGGATGATGCCCTCCAGTTCCATCCATTTGCCTAGGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCACTCAGGATGATGCCCTCCAGTTCCATCCATTTGCCTAGGAATT  650

seq1  TCATAAATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAATG  700

seq1  TACCACATTTTTTGTATCCATTCCTCTGTTGAGGGGCATCTGGG-TTCTT  749
      |||||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  TACCACATTTTTTGTATCCATTCCTCTGTTGA-GGGCATCTGGGTTTCTT  749

seq1  TCCAGCTTCTGGCTATTATAAACAAGGCTGCTATGAACATAGTGGAGCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTTCTGGCTATTATAAACAAGGCTGCTATGAACATAGTGGAGCAT  799

seq1  GTGTCC-TTCTTACCAGTTGGAACATCTTCTGGATACATGCCCAGGAGAG  848
      |||||| ||||||| |||||||||||||||||||||||||||||||||||
seq2  GTGTCCTTTCTTACAAGTTGGAACATCTTCTGGATACATGCCCAGGAGAG  849

seq1  GTATTGCGTGATCCTCCGGTAGTACTATGTCCAATTTTCTGAGGAACCGC  898
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTATTGCGTGATCCTCCGGTAGTACTATGTCC-ATTTTCTGAGGAACCGC  898

seq1  CAGACTGATTTCCAGAGTGGTTATACAAGCTTGCAATCCCACCAACAATG  948
      |||||||||||||||||||||||||||||||||||||||   ||||||| 
seq2  CAGACTGATTTCCAGAGTGGTTATACAAGCTTGCAATCC--ACAACAAT-  945

seq1  GAGGAGTGTTCCTCTTTCTCTACATCCTCGCCAGCATC-TGCTGTCACCT  997
      |||||||||||||||||||||||||||||| ||||||| |||||||| ||
seq2  GAGGAGTGTTCCTCTTTCTCTACATCCTCG-CAGCATCTTGCTGTCA-CT  993

seq1  GAATTTTTGATCTTACCCATTCTGACTGGTGTGAGGTAGGATC  1040
      |||||||||||||||||||||||||||||||||||||| ||||
seq2  GAATTTTTGATCTTACCCATTCTGACTGGTGTGAGGTACGATC  1036