BAC Information

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BAC

Clone NameB6Ng01-014A10
Chromosome2 (Build37)12 (Build37)
Map Location 4,724,498 - 4,725,09025,421,238 - 25,421,276
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040257, LOC100040163, LOC666944, 1700080N15Rik, Frmd4a, EG634452, Prpf18, LOC623483, E130319B15Rik
Downstream geneLOC666973, Sephs1, Phyh, LOC381346, LOC100040250, LOC100040426, 1110017I16Rik, Mcm10, Optn, Ccdc3, LOC100040292, Camk1d, LOC666599, Cdc123
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014A10.bB6Ng01-014A10.g
ACCDH848688DH848689
length587108
definitionDH848688|Mus musculus domesticus DNA, BAC clone: B6Ng01-014A10, 5' end.DH848689|Mus musculus domesticus DNA, BAC clone: B6Ng01-014A10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(4,724,498 - 4,725,090)(25,421,238 - 25,421,276)
sequence
cacagggcaaacccagccacatgcaagcacaagagaagacaccaacattc
agtgactagctgagttgtaggatggagggagggggctagttggggtgcta
agatacagagcagtgtccagaggatagtaggtgagtctggtctagatact
agcacagtgatcccttctgtgaatgtttcctttaaaggtgtggcccccgg
tgtgtctactaagcttgagcctcacatccatgtgttggcctccgagtgag
ggaaggccaggcaggcagcccaatgaaaggaccatgaacaaatcagagac
ctaatactatattgactaacttgtcatcctgtagtttatatcatgtgggc
tgccctgtcacccacctacagcttccatcagcattggcaaatttatgaca
atggggggcgggtgagtggcaacatgatgaatcctggaaatcagattcca
gagaccagcatcagtgtgcagatctgagtctcttgttcagcacataagct
ttttgagtgtttgagccgagcccaagtccctaaatccccatcaccatccc
cagtgaaagccctgcctgctgaggttattcagaagga
cgtgaatctgaggctagcctaatttacttagttttaggaccaatgggcta
catagtgagacaagtactggaagaggaagaagaagaagaagaggaggagg
aggaagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_4724498_4725090
seq2: B6Ng01-014A10.b_49_641

seq1  GAATTCCACAGGGCAAACCCAGCCACATGCAAGCACAAGAGAAGACACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGGGCAAACCCAGCCACATGCAAGCACAAGAGAAGACACCA  50

seq1  ACATTCAGTGACTAGCTGAGTTGTAGGATGGAGGGAGGGGGCTAGTTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAGTGACTAGCTGAGTTGTAGGATGGAGGGAGGGGGCTAGTTGGG  100

seq1  GTGCTAAGATACAGAGCAGTGTCCAGAGGATAGTAGGTGAGTCTGGTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAAGATACAGAGCAGTGTCCAGAGGATAGTAGGTGAGTCTGGTCTA  150

seq1  GATACTAGCACAGTGATCCCTTCTGTGAATGTTTCCTTTAAAGGTGTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTAGCACAGTGATCCCTTCTGTGAATGTTTCCTTTAAAGGTGTGGC  200

seq1  CCCCGGTGTGTCTACTAAGCTTGAGCCTCACATCCATGTGTTGGCCTCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGTGTGTCTACTAAGCTTGAGCCTCACATCCATGTGTTGGCCTCCG  250

seq1  AGTGAGGGAAGGCCAGGCAGGCAGCCCAATGAAAGGACCATGAACAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGGAAGGCCAGGCAGGCAGCCCAATGAAAGGACCATGAACAAATC  300

seq1  AGAGACCTAATACTATATTGACTAACTTGTCATCCTGTAGTTTATATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCTAATACTATATTGACTAACTTGTCATCCTGTAGTTTATATCAT  350

seq1  GTGGGCTGCCCTGTCACCCACCTACAGCTTCCATCAGCATTGGCAAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTGCCCTGTCACCCACCTACAGCTTCCATCAGCATTGGCAAATTT  400

seq1  ATGACAATGGGGGGCGGGTGAGTGGCAACATGATGAATCCTGGAAATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAATGGGGGGCGGGTGAGTGGCAACATGATGAATCCTGGAAATCAG  450

seq1  ATTCCAGAGACCAGCATCAGTGTGCAGATCTGAGTCTCTTGTTCAGCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGAGACCAGCATCAGTGTGCAGATCTGAGTCTCTTGTTCAGCACA  500

seq1  TAAGCTTTTTGAGTGTTTGAGCCGAGCCCAAGTCCCTAAATCCCCATCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTTTTGAGTGTTTGAGCCGAGCCCAAGTCCCTAAATCCCCATCAC  550

seq1  CATCCCCAGTGAAAGCCCTGCCTGCTGAGGTTATTCAGAAGGA  593
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCAGTGAAAGCCCTGCCTGCTGAGGTTATTCAGAAGGA  593

seq1: chr12_25421238_25421276
seq2: B6Ng01-014A10.g_145_180 (reverse)

seq1  CTCTTCCTCCTCCTCCTCTTCTTCTTCCTCCTCTTCCTC  39
      |||||||||||||||||||||||||   || ||||||||
seq2  CTCTTCCTCCTCCTCCTCTTCTTCT---TCTTCTTCCTC  36