BAC Information

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BAC

Clone NameB6Ng01-014I07
Chromosome12 (Build37)
Map Location 92,714,446 - 92,866,893
singlet/doubletdoublet
Overlap geneTshr, Gtf2a1
Upstream geneLOC100039287, Dio2, LOC100039295, 4930544I03Rik, 4930534B04Rik, 5430427M07Rik
Downstream geneSton2, EG666955, LOC100039631, Sel1l, LOC100039367, EG432681, LOC667589, LOC100039387, LOC100039425, LOC628116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014I07.bB6Ng01-014I07.g
ACCDH849036DH849037
length1,0531,094
definitionDH849036|Mus musculus domesticus DNA, BAC clone: B6Ng01-014I07, 5' end.DH849037|Mus musculus domesticus DNA, BAC clone: B6Ng01-014I07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,865,833 - 92,866,893)(92,714,446 - 92,715,542)
sequence
gaattcccaatggaaaactttctccttaagctccaacctgggcaaaccta
ctcctcaagttcccaagtcactctcatcctgtcccagtggggattgtatg
tttgtttctttgtttttttgacagggtttcactgtgtctccctggttgtc
ctcaaactcagagattcacctgcctcagcctcccgagtgctgggattaaa
ggggtgcaccactgcctccctgctgaaattgtattcttacataaatactc
tcaaaccttatataaatactcacaaaggaagccaaggggcacatagagga
aaaaatttaatgacagttgtttgacgaccctcaacccactttttaaattt
ctcccttgtggataccaagagtaagatcatgaacagtgggaagaagtcat
taaaatgagtcacacaccgtttccctgagatctactgacatgaatgggcc
gttccagacttgacagcatcttttacttgcctcacagacaagacacacca
acaaacaacctgagtgaaagtggcaggacgtcccccttctacctcactct
aagatataaagtagagtctgtcccactactccttctcatcccgccctata
cccagggaaggttctttccaaaccagagcaagtcaagcttgcattgtcaa
aaaagatacagagtggctcaaaggttacagataaaattatccggagccgt
tgaagtcagatgcctgagagatggttcaacaggcaaactgctttctgcgc
aacccagcaaccccggcagcttcagttctggagtccatcgccagcgtcca
catgaaaaagatgaacgtgcaggttctgtctgaattttcagccccaggaa
tactacaggatgggggggggggggcaaccatgacaagtcaaactacccag
gagaaaagcaacagaaattagagagagagaataatagagaagagagagag
accctgcctcaaaacaagttagaaagagtagtgactgccacacgcacact
tgaaatctttcttaattggtgcctccaatatggcacattaacctaatttc
tta
gaattctccttgaatcatgactaggaagtatgttattcttcttttctgtc
tttcccagtgaattatgggaaaaatgtaagcatcatcaaaaatcatgaga
tgataaatgtgaattaaattcacttgaccagtgattttttcccactgtgt
gaaaccagattttctaagtttaatgctatccctcagaaaaggactttaca
agatgtaaaagtgctctgagcttttgaaagcaccaacagctgtctaggcg
gagatgaacctaaaccttctaaacgctctacccatttacattacttcatc
aaaatgacgagttctctggtttcactttgattattttgtaactgagagga
ctgtaggaagaaagggttttcactgctgtgttttttgtgacgatcaagat
tgtcagtaggcaatgagtttccgctgtagcacacaggacaaataaatgaa
cactttgctgatagggttttccttttatgacagtgagatatttccaggta
atgcacccgtttgctacctctttgtataaaattgtagcattgcataactc
attagacctacctgtgaaagctggagtgtttggagaagcaggaagtggac
ttgcatggatcagtaaaacaatcaggaaatgtttcaggtttccttctgca
gaattcacagtcccaggagtccccatgtaagtctccattttgcagacctg
tctacagtttttctcctggggtgatggtgatggaaagctaacctgtacag
gaattgacccatcacccagtttgtgaccctatggttgtgccttggaagga
actatgtatatacatctgagtttgtttgtttaattgtttgtttgtctgtc
tttcagagaaactttgatgacatatactatttctttagtggtgtgccatc
ctctattcacattcccttttctgatatctccctcccttccttcccacccc
ctcttcctttgtttggcttctctattcaagaatggagcagtgtttgtttt
gcttcatgttgcagagacaaggggaagaatttaagaattgtttcaaggat
agaaggaagtgcaaatggcggcacctaacaatactcactggcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_92865833_92866893
seq2: B6Ng01-014I07.b_47_1099 (reverse)

seq1  TAAGAAACTAGGTTAACTGTGCCATTATTGGA-GCACCAATTTATAAAAA  49
      ||||||| |||||||| ||||||| ||||||| ||||||||| | ||| |
seq2  TAAGAAATTAGGTTAA-TGTGCCA-TATTGGAGGCACCAATTAAGAAAGA  48

seq1  GATTTTCATGTGTGTGCGTGTGGCAGTCACTACTCTTTCTCACTTTGTTT  99
         |||||   ||||||||||||||||||||||||||||| ||||   ||
seq2  ---TTTCA--AGTGTGCGTGTGGCAGTCACTACTCTTTCTAACTT--GTT  91

seq1  TTGAGGCAGGGTCTCTCTCTCTCTCT-TATTATTTCTCTCTCTCTTATTT  148
      |||||||||||||||||||||| ||| ||||| |||||||||||| ||||
seq2  TTGAGGCAGGGTCTCTCTCTCT-TCTCTATTA-TTCTCTCTCTCTAATTT  139

seq1  CTGTTGCTTTTCTCCTGGGTAGTTTGACTTGTCATGGTTG-CCCCCCCCC  197
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTGTTGCTTTTCTCCTGGGTAGTTTGACTTGTCATGGTTGCCCCCCCCCC  189

seq1  CCCATCCTGTAGTATTCCTGGGGCTGAAAATTCAGACAGAACCTGCACGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCTGTAGTATTCCTGGGGCTGAAAATTCAGACAGAACCTGCACGT  239

seq1  TCATCTTTTTCATGTGGACGCTGGCGATGGACTCCAGAACTGAAGCTGCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTTTTCATGTGGACGCTGGCGATGGACTCCAGAACTGAAGCTGCC  289

seq1  GGGGTTGCTGGGTTGCGCAGAAAGCAGTTTGCCTGTTGAACCATCTCTCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTGCTGGGTTGCGCAGAAAGCAGTTTGCCTGTTGAACCATCTCTCA  339

seq1  GGCATCTGACTTCAACGGCTCCGGATAATTTTATCTGTAACCTTTGAGCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTGACTTCAACGGCTCCGGATAATTTTATCTGTAACCTTTGAGCC  389

seq1  ACTCTGTATCTTTTTTGACAATGCAAGCTTGACTTGCTCTGGTTTGGAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTATCTTTTTTGACAATGCAAGCTTGACTTGCTCTGGTTTGGAAA  439

seq1  GAACCTTCCCTGGGTATAGGGCGGGATGAGAAGGAGTAGTGGGACAGACT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTCCCTGGGTATAGGGCGGGATGAGAAGGAGTAGTGGGACAGACT  489

seq1  CTACTTTATATCTTAGAGTGAGGTAGAAGGGGGACGTCCTGCCACTTTCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTATATCTTAGAGTGAGGTAGAAGGGGGACGTCCTGCCACTTTCA  539

seq1  CTCAGGTTGTTTGTTGGTGTGTCTTGTCTGTGAGGCAAGTAAAAGATGCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTTGTTTGTTGGTGTGTCTTGTCTGTGAGGCAAGTAAAAGATGCT  589

seq1  GTCAAGTCTGGAACGGCCCATTCATGTCAGTAGATCTCAGGGAAACGGTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGTCTGGAACGGCCCATTCATGTCAGTAGATCTCAGGGAAACGGTG  639

seq1  TGTGACTCATTTTAATGACTTCTTCCCACTGTTCATGATCTTACTCTTGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTCATTTTAATGACTTCTTCCCACTGTTCATGATCTTACTCTTGG  689

seq1  TATCCACAAGGGAGAAATTTAAAAAGTGGGTTGAGGGTCGTCAAACAACT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCACAAGGGAGAAATTTAAAAAGTGGGTTGAGGGTCGTCAAACAACT  739

seq1  GTCATTAAATTTTTTCCTCTATGTGCCCCTTGGCTTCCTTTGTGAGTATT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTAAATTTTTTCCTCTATGTGCCCCTTGGCTTCCTTTGTGAGTATT  789

seq1  TATATAAGGTTTGAGAGTATTTATGTAAGAATACAATTTCAGCAGGGAGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAGGTTTGAGAGTATTTATGTAAGAATACAATTTCAGCAGGGAGG  839

seq1  CAGTGGTGCACCCCTTTAATCCCAGCACTCGGGAGGCTGAGGCAGGTGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTGCACCCCTTTAATCCCAGCACTCGGGAGGCTGAGGCAGGTGAA  889

seq1  TCTCTGAGTTTGAGGACAACCAGGGAGACACAGTGAAACCCTGTCAAAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGTTTGAGGACAACCAGGGAGACACAGTGAAACCCTGTCAAAAA  939

seq1  AACAAAGAAACAAACATACAATCCCCACTGGGACAGGATGAGAGTGACTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGAAACAAACATACAATCCCCACTGGGACAGGATGAGAGTGACTT  989

seq1  GGGAACTTGAGGAGTAGGTTTGCCCAGGTTGGAGCTTAAGGAGAAAGTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTTGAGGAGTAGGTTTGCCCAGGTTGGAGCTTAAGGAGAAAGTTT  1039

seq1  TCCATTGGGAATTC  1061
      ||||||||||||||
seq2  TCCATTGGGAATTC  1053

seq1: chr12_92714446_92715542
seq2: B6Ng01-014I07.g_68_1161

seq1  GAATTCTCCTTGAATCATGACTAGGAAGTATGTTATTCTTCTTTTCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTGAATCATGACTAGGAAGTATGTTATTCTTCTTTTCTGTC  50

seq1  TTTCCCAGTGAATTATGGGAAAAATGTAAGCATCATCAAAAATCATGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAGTGAATTATGGGAAAAATGTAAGCATCATCAAAAATCATGAGA  100

seq1  TGATAAATGTGAATTAAATTCACTTGACCAGTGATTTTTTCCCACTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAATGTGAATTAAATTCACTTGACCAGTGATTTTTTCCCACTGTGT  150

seq1  GAAACCAGATTTTCTAAGTTTAATGCTATCCCTCAGAAAAGGACTTTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCAGATTTTCTAAGTTTAATGCTATCCCTCAGAAAAGGACTTTACA  200

seq1  AGATGTAAAAGTGCTCTGAGCTTTTGAAAGCACCAACAGCTGTCTAGGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAAAAGTGCTCTGAGCTTTTGAAAGCACCAACAGCTGTCTAGGCG  250

seq1  GAGATGAACCTAAACCTTCTAAACGCTCTACCCATTTACATTACTTCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAACCTAAACCTTCTAAACGCTCTACCCATTTACATTACTTCATC  300

seq1  AAAATGACGAGTTCTCTGGTTTCACTTTGATTATTTTGTAACTGAGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGACGAGTTCTCTGGTTTCACTTTGATTATTTTGTAACTGAGAGGA  350

seq1  CTGTAGGAAGAAAGGGTTTTCACTGCTGTGTTTTTTGTGACGATCAAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGAAGAAAGGGTTTTCACTGCTGTGTTTTTTGTGACGATCAAGAT  400

seq1  TGTCAGTAGGCAATGAGTTTCCGCTGTAGCACACAGGACAAATAAATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTAGGCAATGAGTTTCCGCTGTAGCACACAGGACAAATAAATGAA  450

seq1  CACTTTGCTGATAGGGTTTTCCTTTTATGACAGTGAGATATTTCCAGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGCTGATAGGGTTTTCCTTTTATGACAGTGAGATATTTCCAGGTA  500

seq1  ATGCACCCGTTTGCTACCTCTTTGTATAAAATTGTAGCATTGCATAACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCCGTTTGCTACCTCTTTGTATAAAATTGTAGCATTGCATAACTC  550

seq1  ATTAGACCTACCTGTGAAAGCTGGAGTGTTTGGAGAAGCAGGAAGTGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGACCTACCTGTGAAAGCTGGAGTGTTTGGAGAAGCAGGAAGTGGAC  600

seq1  TTGCATGGATCAGTAAAACAATCAGGAAATGTTTCAGGTTTCCTTCTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGGATCAGTAAAACAATCAGGAAATGTTTCAGGTTTCCTTCTGCA  650

seq1  GAATTCACAGTCCCAGGAGTCCCCATGTAAGTCTCCATTTTGCAGACCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTCCCAGGAGTCCCCATGTAAGTCTCCATTTTGCAGACCTG  700

seq1  TCTACAGTTTTTCTCCTGGGGTGATGGTGATGGAAAGCTAACCTGTACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGTTTTTCTCCTGGGGTGATGGTGATGGAAAGCTAACCTGTACAG  750

seq1  GAATTGACCCATCACCCAGTTTGTGACCCTATGGTTGTGCCTTGGAAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGACCCATCACCCAGTTTGTGACCCTATGGTTGTGCCTTGGAAGGA  800

seq1  ACTATGTATATACATCTGAGTTTGTTTGTTTAATTGTTTGTTTGTCTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTATATACATCTGAGTTTGTTTGTTTAATTGTTTGTTTGTCTGTC  850

seq1  TTTCAGAGAAACTTTGATGACAATATACTATTTCTTTTAGTGGTGTGCCA  900
      ||||||||||||||||||||| |||||||||||| |||||||||||||||
seq2  TTTCAGAGAAACTTTGATGAC-ATATACTATTTC-TTTAGTGGTGTGCCA  898

seq1  TCCTCTATTCACATTCCCTTTTCTGGATATCTCCCTCCCTTCCTTCCCAC  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCCTCTATTCACATTCCCTTTTCT-GATATCTCCCTCCCTTCCTTCCCAC  947

seq1  CCCCTCCTCCTTTGTTTGGCTTCTCTA-TCAAGAAT-GAGCAGTGTTTGT  998
      |||||| |||||||||||||||||||| |||||||| |||||||||||||
seq2  CCCCTCTTCCTTTGTTTGGCTTCTCTATTCAAGAATGGAGCAGTGTTTGT  997

seq1  TTTGC-TCATGTTTGCAG-TAGCAGGGGAAGAATTTAAGAATTGTTTCAA  1046
      ||||| ||||| ||||||  |  ||||||||||||||||||||||||| |
seq2  TTTGCTTCATG-TTGCAGAGACAAGGGGAAGAATTTAAGAATTGTTTC-A  1045

seq1  AGGATAGGAGG-ACTGCAAATTGCAGGCAACTAAACAATACTCAGTTGGC  1095
      ||||||| ||| | ||||||| || |||| || |||||||||||  ||||
seq2  AGGATAGAAGGAAGTGCAAATGGC-GGCACCT-AACAATACTCA-CTGGC  1092

seq1  TA  1097
      ||
seq2  TA  1094