BAC Information

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BAC

Clone NameB6Ng01-015E21
Chromosome12 (Build37)
Map Location 57,677,177 - 57,824,635
singlet/doubletdoublet
Overlap geneLOC100039993, Nkx2-9, Pax9, Slc25a21
Upstream geneInsm2, Garnl1, Brms1l, LOC100039915, LOC382600, LOC382601, Mbip, EG621837, E030019B13Rik, Titf1
Downstream geneAU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015E21.bB6Ng01-015E21.g
ACCDH849603DH849604
length1,037306
definitionDH849603|Mus musculus domesticus DNA, BAC clone: B6Ng01-015E21, 5' end.DH849604|Mus musculus domesticus DNA, BAC clone: B6Ng01-015E21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,823,604 - 57,824,635)(57,677,177 - 57,677,482)
sequence
gaattcagtaaaagtccctcagattttcatagacactgggattttacttt
ctccttctaaaggttttccttggtctgagaaataatgtctgtggatgctg
acttgggtacatctagagatgcaagtacacatgtctctacaattgctggc
taggcatgacagtctcaaggatcctcaatacattgagcttatcatttctc
cataatagacccctttgggctcattcaagtttatatccagttaggaaatt
agggaactttccataagactcagaaatctcacctgctcagaaatgttatg
aagatttaatacatagaaatcacagtgcctgccacacagtgagtatctgc
tcatcttccttttactccagtccttaaaataaatgaatgaaactgaaaat
ccaggtgggaggagacataacgaaccatccttttagctaaaacatggtga
ttggcaagaatgatgttccttcactgactccacagtggccaagcttttaa
gaaacaagagctagattctatatcatggatttcaacacgtaaactccagg
agtgatttccctttccctgtcacatgtttccctctgcactctgctcattc
gatcgcattgcgtggatgactggccacgcacacactccatcctgctctgg
atttattgagctacatatatccttgggtgggcgcccaggatcttgcaaaa
gaagctgaagacttaattagtgaaggtctgcacagaggctaccacccgag
ctcatctctgctgccgagccaaggcagctccattcagcttggctttcctt
acccatgagcacttgcttcagcatgggccacttgctcctctccatccgca
tctcgcagagctcacctggaggtcagttggagcagacttccgtgctgctt
acgtcccttctcttctcccaagttcctaaatttagaacaccttattttgc
caggcagttgcagcacatgccattcatcccagcacttagtagtagaggca
ggtgatctcttttttttttttttatctgtgttataaa
tggccctctggaagtgtatccagtgttcttacctgctgagcctgaaggat
ggagagatggctcagtgattaagagtactttctgctcttgcagaggaccc
aggttctgcttgcagagcccacatctgggattgccaaggagggtagctga
tgttggaaaaactaacattacttgagtagggaaggccctttctttacttt
gagggtgcttttaaaattttacttttttgaagtttaaaagaagcgtttta
agaaaaaccttttaatatgtgttgcaagcaatccaaaatgtgtgtgtgtg
tggtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_57823604_57824635
seq2: B6Ng01-015E21.b_44_1080 (reverse)

seq1  TTTAT-ACACAGATTAAAAAAAAAAAAAGAGATCCTTCTGCCTCTACCTT  49
      ||||| |||||||| |||||||||||||||||| |  ||||||||| || 
seq2  TTTATAACACAGATAAAAAAAAAAAAAAGAGAT-CACCTGCCTCTA-CTA  48

seq1  CTAAGTGCTGGGATGAATGGCATGTGCTGCCACTGCCTGGCAAAATAAGG  99
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTAAGTGCTGGGATGAATGGCATGTGCTGCAACTGCCTGGCAAAATAAGG  98

seq1  TGTTCTTAATTTAGGAACTTGGGAG-AGAG-AGGGACGTAAGCAGCACGG  147
      |||||| |||||||||||||||||| |||| |||||||||||||||||||
seq2  TGTTCTAAATTTAGGAACTTGGGAGAAGAGAAGGGACGTAAGCAGCACGG  148

seq1  AAGTCTGCTCC-ACTGACCT-CAGGTGAGCTCTGCGAGATGCGGGTGGAG  195
      ||||||||||| |||||||| ||||||||||||||||||||||| |||||
seq2  AAGTCTGCTCCAACTGACCTCCAGGTGAGCTCTGCGAGATGCGGATGGAG  198

seq1  AGGAGC-AGTGG-CCATGCTGAAGCAAGTGCTCATGGGTAAGGAAAGCCA  243
      |||||| ||||| |||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAAGTGGCCCATGCTGAAGCAAGTGCTCATGGGTAAGGAAAGCCA  248

seq1  AGCTGAATGGAGCTGCCTTGGCTCGGCAGCAGAGATGAGCTCGGGTGGTA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAATGGAGCTGCCTTGGCTCGGCAGCAGAGATGAGCTCGGGTGGTA  298

seq1  GCCTCTGTGCAGACCTTCACTAATTAAGTCTTCAGCTTCTTTTGCAAGAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGTGCAGACCTTCACTAATTAAGTCTTCAGCTTCTTTTGCAAGAT  348

seq1  CCTGGGCGCCCACCCAAGGATATATGTAGCTCAATAAATCCAGAGCAGGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCGCCCACCCAAGGATATATGTAGCTCAATAAATCCAGAGCAGGA  398

seq1  TGGAGTGTGTGCGTGGCCAGTCATCCACGCAATGCGATCGAATGAGCAGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGTGTGCGTGGCCAGTCATCCACGCAATGCGATCGAATGAGCAGA  448

seq1  GTGCAGAGGGAAACATGTGACAGGGAAAGGGAAATCACTCCTGGAGTTTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAGGGAAACATGTGACAGGGAAAGGGAAATCACTCCTGGAGTTTA  498

seq1  CGTGTTGAAATCCATGATATAGAATCTAGCTCTTGTTTCTTAAAAGCTTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTGAAATCCATGATATAGAATCTAGCTCTTGTTTCTTAAAAGCTTG  548

seq1  GCCACTGTGGAGTCAGTGAAGGAACATCATTCTTGCCAATCACCATGTTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGTGGAGTCAGTGAAGGAACATCATTCTTGCCAATCACCATGTTT  598

seq1  TAGCTAAAAGGATGGTTCGTTATGTCTCCTCCCACCTGGATTTTCAGTTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAAAAGGATGGTTCGTTATGTCTCCTCCCACCTGGATTTTCAGTTT  648

seq1  CATTCATTTATTTTAAGGACTGGAGTAAAAGGAAGATGAGCAGATACTCA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTTATTTTAAGGACTGGAGTAAAAGGAAGATGAGCAGATACTCA  698

seq1  CTGTGTGGCAGGCACTGTGATTTCTATGTATTAAATCTTCATAACATTTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGGCAGGCACTGTGATTTCTATGTATTAAATCTTCATAACATTTC  748

seq1  TGAGCAGGTGAGATTTCTGAGTCTTATGGAAAGTTCCCTAATTTCCTAAC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGGTGAGATTTCTGAGTCTTATGGAAAGTTCCCTAATTTCCTAAC  798

seq1  TGGATATAAACTTGAATGAGCCCAAAGGGGTCTATTATGGAGAAATGATA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATAAACTTGAATGAGCCCAAAGGGGTCTATTATGGAGAAATGATA  848

seq1  AGCTCAATGTATTGAGGATCCTTGAGACTGTCATGCCTAGCCAGCAATTG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAATGTATTGAGGATCCTTGAGACTGTCATGCCTAGCCAGCAATTG  898

seq1  TAGAGACATGTGTACTTGCATCTCTAGATGTACCCAAGTCAGCATCCACA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACATGTGTACTTGCATCTCTAGATGTACCCAAGTCAGCATCCACA  948

seq1  GACATTATTTCTCAGACCAAGGAAAACCTTTAGAAGGAGAAAGTAAAATC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTATTTCTCAGACCAAGGAAAACCTTTAGAAGGAGAAAGTAAAATC  998

seq1  CCAGTGTCTATGAAAATCTGAGGGACTTTTACTGAATTC  1032
      |||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTCTATGAAAATCTGAGGGACTTTTACTGAATTC  1037

seq1: chr12_57677177_57677482
seq2: B6Ng01-015E21.g_75_380

seq1  TGGCCCTCTGGAAGTGTATCCAGTGTTCTTACCTGCTGAGCCTGAAGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTCTGGAAGTGTATCCAGTGTTCTTACCTGCTGAGCCTGAAGGAT  50

seq1  GGAGAGATGGCTCAGTGATTAAGAGTACTTTCTGCTCTTGCAGAGGACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGATGGCTCAGTGATTAAGAGTACTTTCTGCTCTTGCAGAGGACCC  100

seq1  AGGTTCTGCTTGCAGAGCCCACATCTGGGATTGCCAAGGAGGGTAGCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTGCTTGCAGAGCCCACATCTGGGATTGCCAAGGAGGGTAGCTGA  150

seq1  TGTTGGAAAAACTAACATTACTTGAGTAGGGAAGGCCCTTTCTTTACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGAAAAACTAACATTACTTGAGTAGGGAAGGCCCTTTCTTTACTTT  200

seq1  GAGGGTGCTTTTAAAATTTTACTTTTTTGAAGTTTAAAAGAAGCGTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGCTTTTAAAATTTTACTTTTTTGAAGTTTAAAAGAAGCGTTTTA  250

seq1  AGAAAAACCTTTTAATATGTGTTGCAAGCAATCCAAAATGTGTGTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACCTTTTAATATGTGTTGCAAGCAATCCAAAATGTGTGTGTGTG  300

seq1  TGGTGT  306
      ||||||
seq2  TGGTGT  306