BAC Information

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BAC

Clone NameB6Ng01-015M04
Chromosome12 (Build37)
Map Location 68,063,543 - 68,175,132
singlet/doubletdoublet
Overlap geneMdga2
Upstream geneLOC100040700, EG238217
Downstream geneLOC100040745
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015M04.bB6Ng01-015M04.g
ACCDH849931DH849932
length1,1091,121
definitionDH849931|Mus musculus domesticus DNA, BAC clone: B6Ng01-015M04, 5' end.DH849932|Mus musculus domesticus DNA, BAC clone: B6Ng01-015M04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,063,543 - 68,064,658)(68,174,015 - 68,175,132)
sequence
gaattccagtgggaaatattagctcgccttagcatttcagagaacaaatt
atgactagaatttactcttcctaattcttcaaagtgaatatgtttggtac
gagagctttaaagttctgccaaccaaatggagttacttttgtaaagaatt
gtgctcgtgaatacaaatagctacctgtgacaaaagtttgtttcttaaaa
gttgacaatcatatggatgtgagtaagaatgcctttaattgtgcaatgca
aaccatccatttcacatacatgttaaagaatcaaggcacatgctgtggta
ttaaaatccacttttaaagaatacttatttcttgctggcagggtggctca
gatattcaacctgcttacacacagatatagggacctgattatatgcccca
aacccatgaagtaggcataagaggcaggttgtttttgttttctccatgct
aaagagagagaaataagcagattctgcagctttctggtcagacaaattaa
tctcatctgtgttgtccagattcagggggaggcactgtccttagagctaa
ggtgaagagaattggagaaaggcacttgacaaaataacatgtcctccatg
cagctaagcatacacacacacactatccccaacatacacatgtataccag
catgcacatgtcctcacaaatacactataccccaccacacagacatatac
aaaaaaaaaaaaaacaaaagggacctaaaaaactatttctttactatcgt
tattattgttgttgttattgtcgttatcactgttgcttttacagtctagc
caatgagcccattcagtcctcccttccacagttcttcatcccattccact
tctcctgtctccaagaggatgctcccccacaccccagcctacacacaccc
agaggcctcaagtctcttgaaggttaggctaataatcttcactaagccag
attcggcagtgttctgcttgtatatattgttggggcttcagatcagctca
tgtatgctgctggttggtgactcatgttcgagatttctcaagggtcaagt
aattgagaactgcgtttcttcctatgggggttgcgtctctaagcttcttc
agacttttc
gaattcaactccacatggaactcctagtaagcttggagaacaagtgaagc
aggatttgacaatgcgagggctaaaaagaaacatgaccaagagatctgca
catgctcatgtttcaaatctggaatgaacatatattctgagctgagtgca
ttgacatactctctttgaaatcaaaaatgattacagcaacaggaaccatt
tacttccaattattcctaacatggcactccttggtttgtaagaagtaggc
tcccctggtttagaaacgtttcttgtccaggaagatagtggtcttgtgat
tctgttgcaccgatttacatcaaatagcatggatggaggtagaaaatcat
cagaatttccattggcccttttatgccaataacgatgaataaaataatgc
tttgtgactcagaaatgctcttctgtgaaataattttacaacacaggcat
ctgacagatggaggtagaaatgtctactataggtgtagtatgtgatttgc
ttccagctcacagacactccagaaaacggagacaaagagacttggaaact
gataaggacatacaatgagcaatagaactccgctacagcacctttaaaga
gccatggataaagatttgaaacttgaactttttcctttgctgcactggct
ttatacccaccttttccagagaaaatccagcaaccatttcaactcaacgt
tatattcaaattaagatactttccctagtagattgaaaattaattctcat
ctgtggagtatttgtgatttgtcattatgtgcaaagaaacatgatgaaat
tttacaaaattgtaggtatgcattgtgagtgtgtgtgcctgtgtgtgtaa
atgtagcctaagacatctttttctcacatgattgaaaatagagaggaaaa
gaagctacttaagacccatatattgaaacataatttatgaattgaaagat
tcagtagggcatgaagtgaaaatataaaaatatatatttattgtatgtgt
atttctgcatgtctggatactaaaggtgcccacagaggccaaaataagaa
ttagattccccggactgaaagtgaccatctcatggtggtgtgaagaactg
aacctatagtctttgccaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_68063543_68064658
seq2: B6Ng01-015M04.b_43_1151

seq1  GAATTCCAGTGGGAAATATTAGCTCGCCTTAGCATTTCAGAGAACAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGGGAAATATTAGCTCGCCTTAGCATTTCAGAGAACAAATT  50

seq1  ATGACTAGAATTTACTCTTCCTAATTCTTCAAAGTGAATATGTTTGGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTAGAATTTACTCTTCCTAATTCTTCAAAGTGAATATGTTTGGTAC  100

seq1  GAGAGCTTTAAAGTTCTGCCAACCAAATGGAGTTACTTTTGTAAAGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTTTAAAGTTCTGCCAACCAAATGGAGTTACTTTTGTAAAGAATT  150

seq1  GTGCTCGTGAATACAAATAGCTACCTGTGACAAAAGTTTGTTTCTTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCGTGAATACAAATAGCTACCTGTGACAAAAGTTTGTTTCTTAAAA  200

seq1  GTTGACAATCATATGGATGTGAGTAAGAATGCCTTTAATTGTGCAATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACAATCATATGGATGTGAGTAAGAATGCCTTTAATTGTGCAATGCA  250

seq1  AACCATCCATTTCACATACATGTTAAAGAATCAAGGCACATGCTGTGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCCATTTCACATACATGTTAAAGAATCAAGGCACATGCTGTGGTA  300

seq1  TTAAAATCCACTTTTAAAGAATACTTATTTCTTGCTGGCAGGGTGGCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATCCACTTTTAAAGAATACTTATTTCTTGCTGGCAGGGTGGCTCA  350

seq1  GATATTCAACCTGCTTACACACAGATATAGGGACCTGATTATATGCCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCAACCTGCTTACACACAGATATAGGGACCTGATTATATGCCCCA  400

seq1  AACCCATGAAGTAGGCATAAGAGGCAGGTTGTTTTTGTTTTCTCCATGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATGAAGTAGGCATAAGAGGCAGGTTGTTTTTGTTTTCTCCATGCT  450

seq1  AAAGAGAGAGAAATAAGCAGATTCTGCAGCTTTCTGGTCAGACAAATTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGAGAAATAAGCAGATTCTGCAGCTTTCTGGTCAGACAAATTAA  500

seq1  TCTCATCTGTGTTGTCCAGATTCAGGGGGAGGCACTGTCCTTAGAGCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCTGTGTTGTCCAGATTCAGGGGGAGGCACTGTCCTTAGAGCTAA  550

seq1  GGTGAAGAGAATTGGAGAAAGGCACTTGACAAAATAACATGTCCTCCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAGAGAATTGGAGAAAGGCACTTGACAAAATAACATGTCCTCCATG  600

seq1  CAGCTAAGCATACACACACACACTATCCCCAACATACACATGTATACCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAAGCATACACACACACACTATCCCCAACATACACATGTATACCAG  650

seq1  CATGCACATGTCCTCACAAATACACTATACCCCACCACACAGACATATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACATGTCCTCACAAATACACTATACCCCACCACACAGACATATAC  700

seq1  AAAAAAAAAAAAAACAAAAGGGACCTAAAAAACTATTTCTTTACTATCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAACAAAAGGGACCTAAAAAACTATTTCTTTACTATCGT  750

seq1  TATTATTGTTGTTGTTATTGTCGTTATCACTGTTGCTTTTACAGTCTAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTGTTGTTGTTATTGTCGTTATCACTGTTGCTTTTACAGTCTAGC  800

seq1  CAATGAGCCCATTCAGTCCTCCCTTCCACAGTTCTTCATCCCATTCCACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGCCCATTCAGTCCTCCCTTCCACAGTTCTTCATCCCATTCCACT  850

seq1  TCTCCTGTCTCCAAGAGGATGCTCCCCCACACCCCAGCCTACACACACCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGTCTCCAAGAGGATGCTCCCCCACACCCCAGCCTACACACACCC  900

seq1  AGAGGCCTCAAGTCTCTTGAAGGTTAGGCTAATAATCTTCCACTAAGGCC  950
      ||||||||||||||||||||||||||||||||||||||| |||||| |||
seq2  AGAGGCCTCAAGTCTCTTGAAGGTTAGGCTAATAATCTT-CACTAA-GCC  948

seq1  AGATTCGGCAGTGTTCTGC-TGTATATATGTTGGGGGCTTCAGATCAGCT  999
      ||||||||||||||||||| |||||||||  | |||||||||||||||||
seq2  AGATTCGGCAGTGTTCTGCTTGTATATATTGTTGGGGCTTCAGATCAGCT  998

seq1  CATGTATGCTGCCTGGTTGGTGACTCAGTGTTCGAGATATCTCAGGGGTC  1049
      ||||||||||| ||||||||||||||| |||||||||| ||||| |||||
seq2  CATGTATGCTG-CTGGTTGGTGACTCA-TGTTCGAGATTTCTCAAGGGTC  1046

seq1  CAGGTTAATTGAG-ACTGCCGTTCTTCCTATGGGGTTGCCGTCCTCCTAA  1098
       ||  |||||||| |||||  |||||||||||||| |  ||||   ||||
seq2  AAG--TAATTGAGAACTGCGTTTCTTCCTATGGGGGTTGCGTC--TCTAA  1092

seq1  GCTTCTTCCAGACTTTTC  1116
      ||||||| ||||||||||
seq2  GCTTCTT-CAGACTTTTC  1109

seq1: chr12_68174015_68175132
seq2: B6Ng01-015M04.g_67_1187 (reverse)

seq1  ATTTTGCAAAGGACATAGGTTCAGTTCCTACCACCCACATGAGATGGTCC  50
      |||| ||||||   ||||||||||||| |  ||||  |||||||||||| 
seq2  ATTTGGCAAAGACTATAGGTTCAGTTCTTCACACCACCATGAGATGGTCA  50

seq1  ACTTCAGTTCAGGGAATCTAATATCTTATTTTGGCCTCTGTGGGCACCTT  100
        |||||| | ||||||||||| |||||||||||||||||||||||||||
seq2  CTTTCAGTCCGGGGAATCTAAT-TCTTATTTTGGCCTCTGTGGGCACCTT  99

seq1  TATGTATCCAGACATGCAGAAATACACATACAATAAATATATATTTTTAT  150
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TA-GTATCCAGACATGCAGAAATACACATACAATAAATATATATTTTTAT  148

seq1  ATTTTCACTTCATGCCCTACTGTATCTTTC-ATTCAT-AATTATGTTTCA  198
      |||||||||||||||||||||| ||||||| |||||| ||||||||||||
seq2  ATTTTCACTTCATGCCCTACTGAATCTTTCAATTCATAAATTATGTTTCA  198

seq1  ATATATGGGTCTTAAGTAGCTTC-TTTCCTCTCTATTTTC-ATCATGTGA  246
      ||||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  ATATATGGGTCTTAAGTAGCTTCTTTTCCTCTCTATTTTCAATCATGTGA  248

seq1  G-AAAAGATGTCTTAGGCTACATTTACACACACAGGCACACACACTCACA  295
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGATGTCTTAGGCTACATTTACACACACAGGCACACACACTCACA  298

seq1  ATGCATACCTAC-ATTTTGTAATACTTTCATCATGTTTCTTTGCACATAA  344
      |||||||||||| ||||||||| | |||||||||||||||||||||||||
seq2  ATGCATACCTACAATTTTGTAA-AATTTCATCATGTTTCTTTGCACATAA  347

seq1  TGACAAATCACAAATACTCCACAGATGAGAATTAATTTTCAATCTACTAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAATCACAAATACTCCACAGATGAGAATTAATTTTCAATCTACTAG  397

seq1  GGAAAGTATCTTAATTTGAATATAACGTTGAGTTGAAATGGTTGCTGGAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTATCTTAATTTGAATATAACGTTGAGTTGAAATGGTTGCTGGAT  447

seq1  TTTCTCTGGAAAAGGTGGGTATAAAGCCAGTGCAGCAAAGGAAAAAGTTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGGAAAAGGTGGGTATAAAGCCAGTGCAGCAAAGGAAAAAGTTC  497

seq1  AAGTTTCAAATCTTTATCCATGGCTCTTTAAAGGTGCTGTAGCGGAGTTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCAAATCTTTATCCATGGCTCTTTAAAGGTGCTGTAGCGGAGTTC  547

seq1  TATTGCTCATTGTATGTCCTTATCAGTTTCCAAGTCTCTTTGTCTCCGTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTCATTGTATGTCCTTATCAGTTTCCAAGTCTCTTTGTCTCCGTT  597

seq1  TTCTGGAGTGTCTGTGAGCTGGAAGCAAATCACATACTACACCTATAGTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTGTCTGTGAGCTGGAAGCAAATCACATACTACACCTATAGTA  647

seq1  GACATTTCTACCTCCATCTGTCAGATGCCTGTGTTGTAAAATTATTTCAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTCTACCTCCATCTGTCAGATGCCTGTGTTGTAAAATTATTTCAC  697

seq1  AGAAGAGCATTTCTGAGTCACAAAGCATTATTTTATTCATCGTTATTGGC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGCATTTCTGAGTCACAAAGCATTATTTTATTCATCGTTATTGGC  747

seq1  ATAAAAGGGCCAATGGAAATTCTGATGATTTTCTACCTCCATCCATGCTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGGGCCAATGGAAATTCTGATGATTTTCTACCTCCATCCATGCTA  797

seq1  TTTGATGTAAATCGGTGCAACAGAATCACAAGACCACTATCTTCCTGGAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGTAAATCGGTGCAACAGAATCACAAGACCACTATCTTCCTGGAC  847

seq1  AAGAAACGTTTCTAAACCAGGGGAGCCTACTTCTTACAAACCAAGGAGTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACGTTTCTAAACCAGGGGAGCCTACTTCTTACAAACCAAGGAGTG  897

seq1  CCATGTTAGGAATAATTGGAAGTAAATGGTTCCTGTTGCTGTAATCATTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTAGGAATAATTGGAAGTAAATGGTTCCTGTTGCTGTAATCATTT  947

seq1  TTGATTTCAAAGAGAGTATGTCAATGCACTCAGCTCAGAATATATGTTCA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTCAAAGAGAGTATGTCAATGCACTCAGCTCAGAATATATGTTCA  997

seq1  TTCCAGATTTGAAACATGAGCATGTGCAGATCTCTTGGTCATGTTTCTTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGATTTGAAACATGAGCATGTGCAGATCTCTTGGTCATGTTTCTTT  1047

seq1  TTAGCCCTCGCATTGTCAAATCCTGCTTCACTTGTTCTCCAAGCTTACTA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCCTCGCATTGTCAAATCCTGCTTCACTTGTTCTCCAAGCTTACTA  1097

seq1  GGAGTTCCATGTGGAGTTGAATTC  1118
      ||||||||||||||||||||||||
seq2  GGAGTTCCATGTGGAGTTGAATTC  1121