BAC Information

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BAC

Clone NameB6Ng01-015P13
Chromosome12 (Build37)
Map Location 93,197,164 - 93,359,494
singlet/doubletdoublet
Overlap geneLOC667589, LOC100039387
Upstream gene4930544I03Rik, 4930534B04Rik, 5430427M07Rik, Tshr, Gtf2a1, Ston2, EG666955, LOC100039631, Sel1l, LOC100039367, EG432681
Downstream geneLOC100039425, LOC628116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015P13.bB6Ng01-015P13.g
ACCDH850084DH850085
length759954
definitionDH850084|Mus musculus domesticus DNA, BAC clone: B6Ng01-015P13, 5' end.DH850085|Mus musculus domesticus DNA, BAC clone: B6Ng01-015P13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,197,164 - 93,197,920)(93,358,530 - 93,359,494)
sequence
gaattccctttctgatatacattgtgttgtatgtaggtcgaaacattatt
tgcaagaaaaactatgcaagataaaataaagactaaaatgggtagagtct
ccattaagctgaacctatattgggcaaaccagactattagatagctgaag
actcacagagagatcagctcttatgcatctaattgagaaggagacttcac
ctttttttgtaataagagatgtgcagacagttttcactccaaggattagc
acaatttcttttttttttttttaaagatttatttattattatatgtaagt
acactgtagctgtcttcagacacaccagaagagggagtcagatcttgtta
cggatggttgtgagccaccatgtggttgctgggatttgaaccctggacct
tcggaagagcagtcggttgctcttacccactgagccatctcaccagccca
gcacaatttctttttgtctctgttgctgtctgtttctccctgtgtctgtc
tttctgtctctttttctctcagtgtgtgtttgtgtgtgatgagagatagg
tgggggacttcccagtgaagatggtgagagccgcatgaagtagctgaagt
aaagttgaatatgaatcaagaggcagctcttagcgaccgatgtaattggg
ttcctggtagccagatatactttttcgtaggaaagagatcaccctcaatg
tagaatggcaagcttcccttcttgaaatgcccttcactgagggatggagt
gcaggtaga
gaattctcagcaaagagccttccaaacaagcaacattgcgctgacactgg
ccacaaagacccagactggtttaggggaaggtgttctgagcaagggaacc
accagtgcaaactccagggtacagagagacaaggacaaggctagcttgat
gctggcatgctcaaaggagaaagcggtatgagaataaggtgtctgcagct
attacagacaacggtaattttgcttacaaagcagaggatacacccagccc
aatgatctcagagtccagtgttcctcattatcacggagctaaaccctttt
ctggcaaccaaacactatacttctggaaaaatagctggaaagcagatttg
actccttggctgtaggattttatttatctgtaacacgaggccattcagta
agccaaacgattctataaaatggattcccagggatggcccaatccattct
gtctacttaaggggtgccattagtttccccttggctgatgcagactgcta
tgtccaacttggacattatggagttgtctgggaagagaaaggccagtgag
tgagaaatgacaaatgtcttgcctctgcaaagtacactttctcaatgaat
cagcaccatagtgctgggccttcccgcttcttcccgggattgggggccaa
ctccacagctccttagggaccagaaaaatttgtactcacattttttttcc
tgcctaaggaacacagcaagacaagatctggtttaaatcaaactcccatc
caaggcttacctctactcttccaatggaaaggaaatgagacaattaaaaa
cagtttgacttaccctgaatagatcagcccctcgttgagcatcaatgaga
gactgagacaaggaaatctcaggattgaccagcttatgcacatctcagtc
attccatcccccatcagatattcgctattaggaaagatctcatctatgca
tctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_93197164_93197920
seq2: B6Ng01-015P13.b_46_804

seq1  GAATTCCCTTTCTGATATACATTGTGTTGTATGTAGGTCGAAACATTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTTCTGATATACATTGTGTTGTATGTAGGTCGAAACATTATT  50

seq1  TGCAAGAAAAACTATGCAAGATAAAATAAAGACTAAAATGGGTAGAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGAAAAACTATGCAAGATAAAATAAAGACTAAAATGGGTAGAGTCT  100

seq1  CCATTAAGCTGAACCTATATTGGGCAAACCAGACTATTAGATAGCTGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAAGCTGAACCTATATTGGGCAAACCAGACTATTAGATAGCTGAAG  150

seq1  ACTCACAGAGAGATCAGCTCTTATGCATCTAATTGAGAAGGAGACTTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAGAGAGATCAGCTCTTATGCATCTAATTGAGAAGGAGACTTCAC  200

seq1  CTTTTTTTGTAATAAGAGATGTGCAGACAGTTTTCACTCCAAGGATTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTGTAATAAGAGATGTGCAGACAGTTTTCACTCCAAGGATTAGC  250

seq1  ACAATTTCTTTTTTTTTTTTTTAAAGATTTATTTATTATTATATGTAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTCTTTTTTTTTTTTTTAAAGATTTATTTATTATTATATGTAAGT  300

seq1  ACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGAGTCAGATCTTGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGAGTCAGATCTTGTTA  350

seq1  CGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACCCTGGACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACCCTGGACCT  400

seq1  TCGGAAGAGCAGTCGGTTGCTCTTACCCACTGAGCCATCTCACCAGCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAAGAGCAGTCGGTTGCTCTTACCCACTGAGCCATCTCACCAGCCCA  450

seq1  GCACAATTTCTTTTTGTCTCTGTTGCTGTCTGTTTCTCCCTGTGTCTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAATTTCTTTTTGTCTCTGTTGCTGTCTGTTTCTCCCTGTGTCTGTC  500

seq1  TTTCTGTCTCTTTTTCTCTCAGTGTGTGTTTGTGTGTGATGAGAGATAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCTCTTTTTCTCTCAGTGTGTGTTTGTGTGTGATGAGAGATAGG  550

seq1  TGGGGGACTTCCCAGTGAAGATGGTGAGAGCCGCATGAAGTAGCTGAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGACTTCCCAGTGAAGATGGTGAGAGCCGCATGAAGTAGCTGAAGT  600

seq1  AAAGTTGAATATGAATCAGGAGGCAGCTCTTAGCGACCGATGTAATT-GG  649
      |||||||||||||||||| |||||||||||||||||||||||||||| ||
seq2  AAAGTTGAATATGAATCAAGAGGCAGCTCTTAGCGACCGATGTAATTGGG  650

seq1  TTCCTGGTAGCCAGATATACTTTTTCGTAGGAAAGAGATCACCCTCAATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGTAGCCAGATATACTTTTTCGTAGGAAAGAGATCACCCTCAATG  700

seq1  TAGAATGCCAAGCTTCCCTTCTTG-AATGCCCTTCACTGAGGTA-GGAGA  747
      ||||||| |||||||||||||||| ||||||||||||||||| | |||| 
seq2  TAGAATGGCAAGCTTCCCTTCTTGAAATGCCCTTCACTGAGGGATGGAG-  749

seq1  TGCAGGTAGA  757
      ||||||||||
seq2  TGCAGGTAGA  759

seq1: chr12_93358530_93359494
seq2: B6Ng01-015P13.g_72_1025 (reverse)

seq1  CAGATGCATAGATGAGTATTCTTTACTATATAGCAGAATTACTGATGGGG  50
      ||||||||||||||||   ||||| ||| ||||| ||||  |||||||||
seq2  CAGATGCATAGATGAG--ATCTTTCCTA-ATAGC-GAATATCTGATGGGG  46

seq1  AAATGAAAATGACCTGAGATGTTGCATTAGCTTGGTCAATCCTGAGATTT  100
       |  |  ||||| |||||||| ||||| ||| ||||||||||||||||||
seq2  GATGG--AATGA-CTGAGATG-TGCATAAGC-TGGTCAATCCTGAGATTT  91

seq1  CCCTTGTCTCAGTCTCTCATTGAATGCTTCAACGAGTGGCTGATCTATTC  150
       ||||||||||||||||||||| |||| |||||||| |||||||||||||
seq2  -CCTTGTCTCAGTCTCTCATTG-ATGC-TCAACGAGGGGCTGATCTATTC  138

seq1  AGGGTAAGTCAAACTGTTTTTATTTGTCTCATTTCCTGTCCATTGG-AGA  199
      |||||||||||||||||||||| |||||||||||||| |||||||| |||
seq2  AGGGTAAGTCAAACTGTTTTTAATTGTCTCATTTCCTTTCCATTGGAAGA  188

seq1  GTAGAGGTAAGCCTTGGATGGGAGTTTGATTTAAACCAGATC-TGTCTTG  248
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTAGAGGTAAGCCTTGGATGGGAGTTTGATTTAAACCAGATCTTGTCTTG  238

seq1  CTGTGTTCCTTAGGCAGGAAAAAAAATGTGAGTACAAATTTTTCTGGTCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTCCTTAGGCAGGAAAAAAAATGTGAGTACAAATTTTTCTGGTCC  288

seq1  CTAAGGAGCCTGTGGAGTTGGCCCCCAATCCCGGGAAGAAGCGGGAAGGC  348
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGAG-CTGTGGAGTTGGCCCCCAATCCCGGGAAGAAGCGGGAAGGC  337

seq1  CCAGCACTATGGTGCTGATTCATTGAGAAAGTGTACTTTGCAGAGGCAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTATGGTGCTGATTCATTGAGAAAGTGTACTTTGCAGAGGCAAG  387

seq1  ACATTTGTCATTTCTCACTCACTGGCCTTTCTCTTCCCAGACAACTCCAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGTCATTTCTCACTCACTGGCCTTTCTCTTCCCAGACAACTCCAT  437

seq1  AATGTCCAAGTTGGACATAGCAGTCTGCATCAGCCAAGGGGAAACTAATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCAAGTTGGACATAGCAGTCTGCATCAGCCAAGGGGAAACTAATG  487

seq1  GCACCCCTTAAGTAGACAGAATGGATTGGGCCATCCCTGGGAATCCATTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCCTTAAGTAGACAGAATGGATTGGGCCATCCCTGGGAATCCATTT  537

seq1  TATAGAATCGTTTGGCTTACTGAATGGCCTCGTGTTACAGATAAATAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAATCGTTTGGCTTACTGAATGGCCTCGTGTTACAGATAAATAAAA  587

seq1  TCCTACAGCCAAGGAGTCAAATCTGCTTTCCAGCTATTTTTCCAGAAGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACAGCCAAGGAGTCAAATCTGCTTTCCAGCTATTTTTCCAGAAGTA  637

seq1  TAGTGTTTGGTTGCCAGAAAAGGGTTTAGCTCCGTGATAATGAGGAACAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTTGGTTGCCAGAAAAGGGTTTAGCTCCGTGATAATGAGGAACAC  687

seq1  TGGACTCTGAGATCATTGGGCTGGGTGTATCCTCTGCTTTGTAAGCAAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCTGAGATCATTGGGCTGGGTGTATCCTCTGCTTTGTAAGCAAAA  737

seq1  TTACCGTTGTCTGTAATAGCTGCAGACACCTTATTCTCATACCGCTTTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCGTTGTCTGTAATAGCTGCAGACACCTTATTCTCATACCGCTTTCT  787

seq1  CCTTTGAGCATGCCAGCATCAAGCTAGCCTTGTCCTTGTCTCTCTGTACC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAGCATGCCAGCATCAAGCTAGCCTTGTCCTTGTCTCTCTGTACC  837

seq1  CTGGAGTTTGCACTGGTGGTTCCCTTGCTCAGAACACCTTCCCCTAAACC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTTTGCACTGGTGGTTCCCTTGCTCAGAACACCTTCCCCTAAACC  887

seq1  AGTCTGGGTCTTTGTGGCCAGTGTCAGCGCAATGTTGCTTGTTTGGAAGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGGTCTTTGTGGCCAGTGTCAGCGCAATGTTGCTTGTTTGGAAGG  937

seq1  CTCTTTGCTGAGAATTC  965
      |||||||||||||||||
seq2  CTCTTTGCTGAGAATTC  954