BAC Information

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BAC

Clone NameB6Ng01-016F20
Chromosome12 (Build37)4 (Build37)
Map Location 41,467,765 - 41,468,86786,184,231 - 86,184,556
singlet/doubletsingletsinglet
Overlap geneDock4
Upstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277
Downstream geneLOC638487, LOC100043157, LOC100043162, Lrrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016F20.bB6Ng01-016F20.g
ACCDH850344DH850345
length1,103734
definitionDH850344|Mus musculus domesticus DNA, BAC clone: B6Ng01-016F20, 5' end.DH850345|Mus musculus domesticus DNA, BAC clone: B6Ng01-016F20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,467,765 - 41,468,867)(86,184,231 - 86,184,556)
sequence
gaattcagtttcaaacaaatgaagcccagaagggctgcagttgttatgac
tgagtccacatatcccgactgggaagaggtcataggtgattcttctttga
cagttataacccagagatggtggtaagatgaggggtgataagcatgttca
aagccataatatccagccaaaggactaattcttgactttttcttaataac
aaccccatatcccagtaggcagttgctcttcgttatttattatggatgtt
aatttttatgagcagaaacttggtccgtgatacagaagtcgggaggaaat
gacaaagttaaatagttttctaggggttagtatcattacacaaaaggaag
tccacaattgactcacatgttacgaaaataaatttttaattttggagaat
ttggccttagccatataagcccaccaagaaacctagaacattctataagt
taatggtgtactagaatcctattggaaatattctccagagaagcagagta
gaggacgcttacactttagagcaagcaggtctggcaatatctagagaagc
ctggaggaagggtggaggctgggagtcaggaatgttgatttaaagaatgg
taaggagattgtaagtcagcttcttgtaggggctgtgagccttggccctt
gctgtgtccctggtgctaaacatttgctgattggtttagcaggaatgcgt
aaccacgacttacctattttcttgctgcaaacaggttatggttgtatttg
cttgtgattgaaccacgtgtaagacaaaacccatacagatgggtgaggct
aagaataaaggcctgaatgcctgttctgagatgagacactcccctatctt
aggcctatctgatccagcattctggggcagaaaggggagaaatgagccac
cacttgttcaatgtcctaatacatttatttaggccccagaaaattagaca
cggaccaccaactgccgtgcttctcctgtgtgagcgatatcctccattct
gagtgagatgctgtaggtctcagctcagggctgacaagctgtggatccta
actgtcacctacatcagaaggaacagatatggtttgtggcaattctgtcc
aaa
gaattcagcataacgacacactattggcttattcaaacatcagcagaaaa
attacatgtcagcaaaagaatacgtgtaggtcagggtgtcagggttctgt
gagttggatgtttatcaatgctagcagagtatctggtttaaactgtgtca
aagggcaatgggcagagggaggtgccgggccagatggttgttgacttagc
tcagatagccctgttatgtcctcacattcctctttgtctttatggtcaag
ctgttcccaggaatgctttaacgacgggacatgcccgggtttgtttttct
ttgttctcagccccaagcagcctctaggctcataaccagcaatttctgag
tactttatatgacttacaggtcttgaaatttcatctttctttcagaaata
tactgagccatctctccagcttacgctggggaaaggaggtccagtaacag
gccctaattggattccagctcaagggaaggctccaaggcctgacactatt
actgatgttatggtgtgcttatagacaggatcatagcatggctgctctct
gagaggcccaacaagcagcttaaagagacagatgcagatacttacaccca
accaatggacagaagccaggaaccacttgtggttaaattagggaccagca
gtctcaactagcctggatccctgagatctcttagacactgagccaccaac
caggcagcatatgccagctgatatgaggccccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_41467765_41468867
seq2: B6Ng01-016F20.b_45_1147

seq1  GAATTCAGTTTCAAACAAATGAAGCCCAGAAGGGCTGCAGTTGTTATGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTCAAACAAATGAAGCCCAGAAGGGCTGCAGTTGTTATGAC  50

seq1  TGAGTCCACATATCCCGACTGGGAAGAGGTCATAGGTGATTCTTCTTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCACATATCCCGACTGGGAAGAGGTCATAGGTGATTCTTCTTTGA  100

seq1  CAGTTATAACCCAGAGATGGTGGTAAGATGAGGGGTGATAAGCATGTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATAACCCAGAGATGGTGGTAAGATGAGGGGTGATAAGCATGTTCA  150

seq1  AAGCCATAATATCCAGCCAAAGGACTAATTCTTGACTTTTTCTTAATAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATAATATCCAGCCAAAGGACTAATTCTTGACTTTTTCTTAATAAC  200

seq1  AACCCCATATCCCAGTAGGCAGTTGCTCTTCGTTATTTATTATGGATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCATATCCCAGTAGGCAGTTGCTCTTCGTTATTTATTATGGATGTT  250

seq1  AATTTTTATGAGCAGAAACTTGGTCCGTGATACAGAAGTCGGGAGGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTATGAGCAGAAACTTGGTCCGTGATACAGAAGTCGGGAGGAAAT  300

seq1  GACAAAGTTAAATAGTTTTCTAGGGGTTAGTATCATTACACAAAAGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGTTAAATAGTTTTCTAGGGGTTAGTATCATTACACAAAAGGAAG  350

seq1  TCCACAATTGACTCACATGTTACGAAAATAAATTTTTAATTTTGGAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAATTGACTCACATGTTACGAAAATAAATTTTTAATTTTGGAGAAT  400

seq1  TTGGCCTTAGCCATATAAGCCCACCAAGAAACCTAGAACATTCTATAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTTAGCCATATAAGCCCACCAAGAAACCTAGAACATTCTATAAGT  450

seq1  TAATGGTGTACTAGAATCCTATTGGAAATATTCTCCAGAGAAGCAGAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTGTACTAGAATCCTATTGGAAATATTCTCCAGAGAAGCAGAGTA  500

seq1  GAGGACGCTTACACTTTAGAGCAAGCAGGTCTGGCAATATCTAGAGAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACGCTTACACTTTAGAGCAAGCAGGTCTGGCAATATCTAGAGAAGC  550

seq1  CTGGAGGAAGGGTGGAGGCTGGGAGTCAGGAATGTTGATTTAAAGAATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGAAGGGTGGAGGCTGGGAGTCAGGAATGTTGATTTAAAGAATGG  600

seq1  TAAGGAGATTGTAAGTCAGCTTCTTGTAGGGGCTGTGAGCCTTGGCCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGATTGTAAGTCAGCTTCTTGTAGGGGCTGTGAGCCTTGGCCCTT  650

seq1  GCTGTGTCCCTGGTGCTAAACATTTGCTGATTGGTTTAGCAGGAATGCGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTCCCTGGTGCTAAACATTTGCTGATTGGTTTAGCAGGAATGCGT  700

seq1  AACCACGACTTACCTATTTTCTTGCTGCAAACAGGTTATGGTTGTATTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACGACTTACCTATTTTCTTGCTGCAAACAGGTTATGGTTGTATTTG  750

seq1  CTTGTGATTGAACCACGTGTAAGACAAAACCCATACAGATGGGTGAGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGATTGAACCACGTGTAAGACAAAACCCATACAGATGGGTGAGGCT  800

seq1  AAGAATAAAGGCCTGAATGCCTGTTCTGAGATGAGACACTCCCCTATCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAAAGGCCTGAATGCCTGTTCTGAGATGAGACACTCCCCTATCTT  850

seq1  AGGCCTATCTGATTCCAGCATTCTGGGGCAGAAA-GGGAGAAATGAGCCA  899
      |||||||||||| ||||||||||||||||||||| |||||||||||||||
seq2  AGGCCTATCTGA-TCCAGCATTCTGGGGCAGAAAGGGGAGAAATGAGCCA  899

seq1  CCAC-TGTTCAATGTCCTAATACATTTATTTAGGCCCCAGAAAAATTAGA  948
      |||| ||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCACTTGTTCAATGTCCTAATACATTTATTTAGGCCCCAG-AAAATTAGA  948

seq1  CACGGACCACCAACTGCCGTGC-TCCCCTGTGTGAGCGATATCCTCCACT  997
      |||||||||||||||||||||| || |||||||||||||||||||||| |
seq2  CACGGACCACCAACTGCCGTGCTTCTCCTGTGTGAGCGATATCCTCCATT  998

seq1  CTGAGTGAGATGCTGTTAGGTCTCAGCTCAGGGCTGACAAGCTGGTGATC  1047
      ||||||||||||||| ||||||||||||||||||||||||||||  ||||
seq2  CTGAGTGAGATGCTG-TAGGTCTCAGCTCAGGGCTGACAAGCTGTGGATC  1047

seq1  CT-ACTGTCACCTACAAACAG-AGGATCAGATAGTTTTTGGTGGCAATTC  1095
      || |||||||||||| | ||| |||| |||||| |  || ||||||||||
seq2  CTAACTGTCACCTAC-ATCAGAAGGAACAGATA-TGGTTTGTGGCAATTC  1095

seq1  TGTACAAA  1103
      ||| ||||
seq2  TGTCCAAA  1103

seq1: chr4_86184231_86184556
seq2: B6Ng01-016F20.g_470_801

seq1  CTGAGCCATCTCTCCAGCCTATTTGTTCGGCCTTCAAAGCTAAGAATCAT  50
      |||||||||||||||||| ||   | | ||      | |   || | || 
seq2  CTGAGCCATCTCTCCAGCTTA--CGCTGGGGAAAGGAGGTCCAGTAACA-  47

seq1  CTTTACCTTTTGAAATTGCTGAAGAATAGAA-ACAATATTTCCTAACACT  99
           |||  |   ||| | |   ||  |||  |   |   ||| |||||
seq2  --GGCCCTAATTGGATTCCAGCTCAAGGGAAGGCTCCAAGGCCTGACACT  95

seq1  TGGAAATTAC--AGGTAA-----TTCAAAT-TTCAGTGTGATGAGCAGAG  141
           |||||  | || |     | |  ||   |||  | || ||||  |
seq2  -----ATTACTGATGTTATGGTGTGCTTATAGACAGGATCAT-AGCATGG  139

seq1  ----TTTCACAGAGGCACAGCCACACGTTGCCCCATGTGTCATCGTCATC  187
          | ||  |||||| ||   ||| |  ||   | | | ||    ||  
seq2  CTGCTCTCTGAGAGGCCCA---ACAAGCAGCTTAAAGAGACAGATGCAGA  186

seq1  CACT----CTTAAGAAATGAAGACTGAAG--AGGAAGGCAACCATGTAG-  230
       |||    |  ||  ||||  ||| ||||  |||||  | | | ||| | 
seq2  TACTTACACCCAACCAATG--GACAGAAGCCAGGAA--CCA-CTTGTGGT  231

seq1  ------GAGGACCAGTGGTCTCAATTAACCTGGACCCCCAAGACTTCTCA  274
              |||||||  ||||||| || |||||| |||  |||  ||| |
seq2  TAAATTAGGGACCAGCAGTCTCAACTAGCCTGGATCCCTGAGATCTCTTA  281

seq1  GACACTGGACCACCAACCAGGCAGCATACACCAGCTGATATGAGGTCCCC  324
      |||||||  |||||||||||||||||||  ||||||||||||||| ||||
seq2  GACACTGAGCCACCAACCAGGCAGCATATGCCAGCTGATATGAGG-CCCC  330

seq1  AA  326
      ||
seq2  AA  332