BAC Information

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BAC

Clone NameB6Ng01-016F22
Chromosome12 (Build37)
Map Location 75,981,529 - 76,174,259
singlet/doubletdoublet
Overlap geneKcnh5
Upstream geneHif1a, EG277089, Snapc1, Syt16, 1700086L19Rik, Dbpht2, LOC671971
Downstream geneRhoj, Gphb5, Ppp2r5e, Wdr89, LOC665931, Sgpp1, Syne2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016F22.bB6Ng01-016F22.g
ACCDH850348DH850349
length1,1241,012
definitionDH850348|Mus musculus domesticus DNA, BAC clone: B6Ng01-016F22, 5' end.DH850349|Mus musculus domesticus DNA, BAC clone: B6Ng01-016F22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,173,044 - 76,174,259)(75,981,529 - 75,982,534)
sequence
gaattcacttttaattcactggtgtacgcagctactgtactgagccaaag
gtgctcttttgtaatgtcgtgtggactgttacatatatggctctagaggt
tagtaaagtgagccaaagtgtggttagatatgctttgtagttggtttctc
cctacaataagtgctttcatttgattctgctctttggcacctcatccatc
tcttcatccccatctctacctctagtccggagacatgattttgcctcctc
aatccatggaaaagcacacatccatgtgaataaacacccagccttgcatc
ctccgtctcatgcacctgcccagtcttccatgttcatgcttcctaaaggc
ttggcttcctgggtccatttactttctgttgggagcgaacctctttccct
gtcctgcagcttctcttttttgacaggcttcctagacacgttctccccat
cgtgtgaccctttagcgattttcacccttctctgttgcctccttacccac
ttcccttgatagttctctgtgttgccggattgcctttctccaaaatgtcg
aaaactgtgatattggaaacgaatcattgacagaccaagggcagctgccc
tgagagcctgaacagtttttctcacagttgctacttagtgagaagagctg
gctctcaggtatttctctgatgatatggtctgatagttctacaattagaa
atcctactttgtatgtccttgatgacagaagggcctctgaaactcttttc
cccaaacagatgtaattctctatctattactagttccttgtcacaataaa
gcagaaacatacaatgagatcactcaagaaggtggaggaaacacacgagc
ctggggtgtgccctttgggtgggacaggaaggagctaaagctgctcagtg
ataccaacaaggaaagacggttcagactcctttattcctaattctttggt
ggaaattaagaaagcttgatatttacagtgctttgtctgcaactactacc
ctgcagtctatgtccctagtcagacggatgtcctgtcacatcaaatctca
ttatcttgtaagtctgttaactggtctcatttttgggtggggttgttaat
actgcctctccattagagatgagt
gaattctctaatcgtagtgaaacaaattacgctatttaaaagtcatgtct
tgaggcacagttgttaaaaggtggggaagcctttgcaataaaagcatctc
tagtagatctgtgcatgtggcttggatgctgcaaactcatttgtaaatga
actgtcagtcactgtcagcactaggaaggtgcattcctggagtcaccttc
tccatgaagaaatgagagagggaactcttcagtggggcttactgccttgt
gagctgtttccttttgcttgttgttgctttggtttgggtttgtttctttg
tttgtttgttcagtgctgggagaagatacatgcacgtgtaattaggtcat
ggccatcaccttcaggcaggcagggatagaaacaaacatgagcaggatta
gccgtgactctgtgcaatgacctgcccaggtccatcactacctgcagtgc
tcatcatcagctcaatggcttttaagtcatcgctcagagctgtgtacaag
taagaagggacataggaacaggcagggctggctcttggcataattagact
atggaatcccactttcaaaataatcataatgaatccaatgaaggcatttt
tgatgacatttattagaccccttataattttagctgttgtgcattggttg
ctaacatttacaaatgtgagaaatatgtgagtcattttatgggtgaaaaa
aaatcatcttcccaaaataaaagttcacatgtccattttttttttcacat
gaaagaagccagtgaaaggatggaaatactactatttaaatgtaaactgt
aagagcattctataaggtctcccactgacctggaggctatagcatcacag
tcaggctattgcttcataactgacggcggtatgctctgcttatagaggtg
ggcaagaccatggttgtggagggggcacattaatccatgaagttgccaat
gcagggcacttggattctgcttgtgctgtggcccacctggctggaggctt
agtactatttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_76173044_76174259
seq2: B6Ng01-016F22.b_45_1168 (reverse)

seq1  ACTCATCTCTTCCAAAATAATGTTCCTGTCACTCCTGAGGAACAGATCTG  50
                                                        
seq2  --------------------------------------------------  0

seq1  GACTGTACAATTTCTCTGACTTTGTGACTCCTATCTTAATTGGAGAGGCA  100
                                ||||  ||||  | ||||||||| 
seq2  --------------------------ACTC--ATCTCTAATGGAGAGGC-  21

seq1  AGTAATAAACACTCACACAAAAAAATGAAAGGACCCAGTT-ACAGACTTT  149
      ||| || ||||  | |||  |||||||| |    |||||| |||||||| 
seq2  AGT-ATTAACAACCCCACCCAAAAATGAGA----CCAGTTAACAGACTT-  65

seq1  AACAAGATAATGAGATCTGATGTGACAGGAACATCCGTCTGACTAGGGAA  199
       ||||||||||||||| |||||||||||| |||||||||||||||||| |
seq2  -ACAAGATAATGAGATTTGATGTGACAGG-ACATCCGTCTGACTAGGG-A  112

seq1  CATAGACTGCAGGGTAGTAAGTTGCAGACAAAGCACTGTAAATTATCAAG  249
      |||||||||||||||||| ||||||||||||||||||||||| |||||||
seq2  CATAGACTGCAGGGTAGT-AGTTGCAGACAAAGCACTGTAAA-TATCAAG  160

seq1  CCTTTCTTAATTTTCCACCAAAGAATTAGGAATAAAGGAGTCTGAACCGT  299
       ||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  -CTTTCTTAA-TTTCCACCAAAGAATTAGGAATAAAGGAGTCTGAACCGT  208

seq1  CTTTTCCTTGTTGGTATCACTGAGCAGCCTTAGCTCCTTCCTGTCCCACC  349
      | |||||||||||||||||||||||||| |||||||||||||||||||||
seq2  C-TTTCCTTGTTGGTATCACTGAGCAGCTTTAGCTCCTTCCTGTCCCACC  257

seq1  CAAAGGGCACACCCCAGGCTCGTGTGTTTCCTCCACCTTCTTGAGTGATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGCACACCCCAGGCTCGTGTGTTTCCTCCACCTTCTTGAGTGATC  307

seq1  TCATTGTATGTTTCTGCTTTATTGTGACAAGGAACTAGTAATAGATAGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTATGTTTCTGCTTTATTGTGACAAGGAACTAGTAATAGATAGAG  357

seq1  AATTACATCTGTTTGGGGAAAAGAGTTTCAGAGGCCCTTCTGTCATCAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACATCTGTTTGGGGAAAAGAGTTTCAGAGGCCCTTCTGTCATCAAG  407

seq1  GACATACAAAGTAGGATTTCTAATTGTAGAACTATCAGACCATATCATCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATACAAAGTAGGATTTCTAATTGTAGAACTATCAGACCATATCATCA  457

seq1  GAGAAATACCTGAGAGCCAGCTCTTCTCACTAAGTAGCAACTGTGAGAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATACCTGAGAGCCAGCTCTTCTCACTAAGTAGCAACTGTGAGAAA  507

seq1  AACTGTTCAGGCTCTCAGGGCAGCTGCCCTTGGTCTGTCAATGATTCGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTCAGGCTCTCAGGGCAGCTGCCCTTGGTCTGTCAATGATTCGTT  557

seq1  TCCAATATCACAGTTTTCGACATTTTGGAGAAAGGCAATCCGGCAACACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATATCACAGTTTTCGACATTTTGGAGAAAGGCAATCCGGCAACACA  607

seq1  GAGAACTATCAAGGGAAGTGGGTAAGGAGGCAACAGAGAAGGGTGAAAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTATCAAGGGAAGTGGGTAAGGAGGCAACAGAGAAGGGTGAAAAT  657

seq1  CGCTAAAGGGTCACACGATGGGGAGAACGTGTCTAGGAAGCCTGTCAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAAAGGGTCACACGATGGGGAGAACGTGTCTAGGAAGCCTGTCAAAA  707

seq1  AAGAGAAGCTGCAGGACAGGGAAAGAGGTTCGCTCCCAACAGAAAGTAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGCTGCAGGACAGGGAAAGAGGTTCGCTCCCAACAGAAAGTAAA  757

seq1  TGGACCCAGGAAGCCAAGCCTTTAGGAAGCATGAACATGGAAGACTGGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCCAGGAAGCCAAGCCTTTAGGAAGCATGAACATGGAAGACTGGGC  807

seq1  AGGTGCATGAGACGGAGGATGCAAGGCTGGGTGTTTATTCACATGGATGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCATGAGACGGAGGATGCAAGGCTGGGTGTTTATTCACATGGATGT  857

seq1  GTGCTTTTCCATGGATTGAGGAGGCAAAATCATGTCTCCGGACTAGAGGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTTCCATGGATTGAGGAGGCAAAATCATGTCTCCGGACTAGAGGT  907

seq1  AGAGATGGGGATGAAGAGATGGATGAGGTGCCAAAGAGCAGAATCAAATG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGGGATGAAGAGATGGATGAGGTGCCAAAGAGCAGAATCAAATG  957

seq1  AAAGCACTTATTGTAGGGAGAAACCAACTACAAAGCATATCTAACCACAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACTTATTGTAGGGAGAAACCAACTACAAAGCATATCTAACCACAC  1007

seq1  TTTGGCTCACTTTACTAACCTCTAGAGCCATATATGTAACAGTCCACACG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTCACTTTACTAACCTCTAGAGCCATATATGTAACAGTCCACACG  1057

seq1  ACATTACAAAAGAGCACCTTTGGCTCAGTACAGTAGCTGCGTACACCAGT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACAAAAGAGCACCTTTGGCTCAGTACAGTAGCTGCGTACACCAGT  1107

seq1  GAATTAAAAGTGAATTC  1216
      |||||||||||||||||
seq2  GAATTAAAAGTGAATTC  1124

seq1: chr12_75981529_75982534
seq2: B6Ng01-016F22.g_67_1078

seq1  GAATTCTCTAATCGTAGTGAAACAAATTACGCTATTTAAAAGTCATGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAATCGTAGTGAAACAAATTACGCTATTTAAAAGTCATGTCT  50

seq1  TGAGGCACAGTTGTTAAAAGGTGGGGAAGCCTTTGCAATAAAAGCATCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCACAGTTGTTAAAAGGTGGGGAAGCCTTTGCAATAAAAGCATCTC  100

seq1  TAGTAGATCTGTGCATGTGGCTTGGATGCTGCAAACTCATTTGTAAATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGATCTGTGCATGTGGCTTGGATGCTGCAAACTCATTTGTAAATGA  150

seq1  ACTGTCAGTCACTGTCAGCACTAGGAAGGTGCATTCCTGGAGTCACCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCAGTCACTGTCAGCACTAGGAAGGTGCATTCCTGGAGTCACCTTC  200

seq1  TCCATGAAGAAATGAGAGAGGGAACTCTTCAGTGGGGCTTACTGCCTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAAGAAATGAGAGAGGGAACTCTTCAGTGGGGCTTACTGCCTTGT  250

seq1  GAGCTGTTTCCTTTTGCTTGTTGTTGCTTTGGTTTGGGTTTGTTTCTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTTTCCTTTTGCTTGTTGTTGCTTTGGTTTGGGTTTGTTTCTTTG  300

seq1  TTTGTTTGTTCAGTGCTGGGAGAAGATACATGCACGTGTAATTAGGTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTCAGTGCTGGGAGAAGATACATGCACGTGTAATTAGGTCAT  350

seq1  GGCCATCACCTTCAGGCAGGCAGGGATAGAAACAAACATGAGCAGGATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATCACCTTCAGGCAGGCAGGGATAGAAACAAACATGAGCAGGATTA  400

seq1  GCCGTGACTCTGTGCAATGACCTGCCCAGGTCCATCACTACCTGCAGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGACTCTGTGCAATGACCTGCCCAGGTCCATCACTACCTGCAGTGC  450

seq1  TCATCATCAGCTCAATGGCTTTTAAGTCATCGCTCAGAGCTGTGTACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATCAGCTCAATGGCTTTTAAGTCATCGCTCAGAGCTGTGTACAAG  500

seq1  TAAGAAGGGACATAGGAACAGGCAGGGCTGGCTCTTGGCATAATTAGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGGGACATAGGAACAGGCAGGGCTGGCTCTTGGCATAATTAGACT  550

seq1  ATGGAATCCCACTTTCAAAATAATCATAATGAATCCAATGAAGGCATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATCCCACTTTCAAAATAATCATAATGAATCCAATGAAGGCATTTT  600

seq1  TGATGACATTTATTAGACCCCTTATAATTTTAGCTGTTGTGCATTGGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACATTTATTAGACCCCTTATAATTTTAGCTGTTGTGCATTGGTTG  650

seq1  CTAACATTTAC-AATGTGAGAAATATGTGAGTCATTTTATGGGTGAAAAA  699
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTAACATTTACAAATGTGAGAAATATGTGAGTCATTTTATGGGTGAAAAA  700

seq1  AAATCATCTTCCCAAAATAAAAGTTCACATGTCCA-TTTTTTTTTCACAT  748
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAATCATCTTCCCAAAATAAAAGTTCACATGTCCATTTTTTTTTTCACAT  750

seq1  GAAAGAAGCCAGTGAAAGGATGGAAATACTACTA-TTAAATGTAAACTGT  797
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAAAGAAGCCAGTGAAAGGATGGAAATACTACTATTTAAATGTAAACTGT  800

seq1  AAGAGCATTCTATAAGGTCTCCCACTGACCTGGAGGCTATAGCATCACAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCATTCTATAAGGTCTCCCACTGACCTGGAGGCTATAGCATCACAG  850

seq1  TCAGGCTATTGCTTCATAACTGACGGCGGGTATGCTCTGCTTATAGAGGT  897
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCAGGCTATTGCTTCATAACTGACGGC-GGTATGCTCTGCTTATAGAGGT  899

seq1  GGGCAAGACCATGGCTGTGGAGTGTGCACATT-ATCCATG-AGCTGGCAA  945
      |||||||||||||| ||||||| | ||||||| ||||||| || || |||
seq2  GGGCAAGACCATGGTTGTGGAGGGGGCACATTAATCCATGAAGTTGCCAA  949

seq1  TGCAGGGCACTTGGATTCTGC-TGTGCTGTTGTCCCACCT-GCT-GAGGC  992
      ||||||||||||||||||||| ||||||| || ||||||| ||| |||||
seq2  TGCAGGGCACTTGGATTCTGCTTGTGCTG-TGGCCCACCTGGCTGGAGGC  998

seq1  TTAGTACTATTTCC  1006
      ||||||||||||||
seq2  TTAGTACTATTTCC  1012