BAC Information

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BAC

Clone NameB6Ng01-016I20
Chromosome12 (Build37)
Map Location 49,156,060 - 49,274,723
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039190, EG664891
Downstream geneGm1818, GA_x5J8B7W54VK-284379-285078, Olfr1399-ps1, EG665036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016I20.bB6Ng01-016I20.g
ACCDH850484DH850485
length1,135940
definitionDH850484|Mus musculus domesticus DNA, BAC clone: B6Ng01-016I20, 5' end.DH850485|Mus musculus domesticus DNA, BAC clone: B6Ng01-016I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,273,569 - 49,274,723)(49,156,060 - 49,156,996)
sequence
gaattcaatattagcacatgatacaaaacgtgggcactggaagtggcatg
ttgctttcaattctcatagcttgttactggtgaggtatatcctccagcat
ggtactttttaaacttccccaaatagcaaaataactgaggatcaagagtt
caaatactgaggcctatggatatttttcattcaaaccaccagaaactgtg
agtctttcttccataagtttttttttagtcaggcattttctcactaccag
acaaataatctatgcaaatagtattctcaaagtttctgagtaatccaaga
tgatttgttcaggaaggagatttttgtagcacacttatgaatataaaaag
aataaatcaaatgtttacctttaatttacaagaacctgtgtgttttgcta
ttcacacgactttctcataaatctttgttatcctcaaaaaaaaaaaaaaa
gacttaagtcaaagataaacagaacaaaatgcattgaacatatatagaat
agttaaaaaaataccatataaataaattaagagaattctttagaagacag
tttggaaatgtcaaaattgtagaaccaatggaaatacaaccaccaataca
tggaattgaaaaaaaaattgaatgaaaaggaataattggctttgcagaac
aacaacaaaacattgcaatactgagagtcatggatatgctttggaattca
ttgtttttatgaaataaaaaaaaaatcagaacagcattatagtaaatcag
aacaaaactcaagtaaagataccagaatctggtagacatttattatgcag
gcagattgatgctcattcttgtgtacgctcctctagcttctctttttttt
cttttttttctttcttttttttttttttttttcgagacagggtttctctg
gtgtagtcctggctgtcctgggactcactctgtagaccaggctggcctcg
aactcagaaatccgcctgcctctgcctcccaagtgctgggatcaaaggcg
tgtgccaccacgccctgctcaagtgcatttgactagcttaaacatgtcac
tttgcacacataggaataacactaagacttactcatttgtttatatttat
agcagtctatgtaatcactgcaatgctaggactga
gaattcattctttttaatagctgagtagtactccattgtgtaaaagttcc
acattttctgtacattcctctgttgagggatatcagggttctttccacca
aacccagacactgttgcatatgccagaaagattttgctgacaggatcatg
atatagttttctcttgtgaggctatgccagtgtctggcaaatacataagt
ggatgctcacagtcatctataggatggaacacagggcccccaatggagga
gctagagaaagtacccaaggatctaaaggggtctgcaaccctataggagg
aacaacaatatgaactaaccagtacccgccagagtttgtgtctctagctg
catatgtagcagaagatggcctagtcgcctatcaatgggaggagaggccc
ttggtcttgtgaagattatatgccctaccattggtatgttggaatgatgc
tgtgccaggacactagactgcctttaacctagacttgcagtcatttagtg
ggctcgagggaagtgcatagggggtgggaaaatatgtcctaagatgaaga
tgaggttccctgacagtaggttctgacacctgctggaaatcacacagagg
agtcaagaatggaggatctggggtccatggtactacaatggagagcctgg
gccagggtgtcccaaatatctggatatccagatgcctttgtgttgcagga
aaggctgaggataatgagtccctgggttgatgggtggtgtggagaactcc
agcttagctcatcagtgatgtttccttagcacagaaggacctttttatga
gagacttggggagcagctctgtagatgaaagcgttttccatgctcgccat
ggtagctcttgatgaaagagctagtacttggttccaacagtttattaatt
ggttcatcatggaaaatggatatataccacctctctcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_49273569_49274723
seq2: B6Ng01-016I20.b_44_1178 (reverse)

seq1  TCAGTCTCTAGCACTGCAGGTGATTACATAAGAACTGCCTCACTAAATAT  50
      |||||| |||||| |||| |||||||||||   ||||   |  |||||||
seq2  TCAGTC-CTAGCATTGCA-GTGATTACATA--GACTG---CTATAAATAT  43

seq1  AGACAAATGAAGTTAAAGTTCCTAAGTGTTATTCCTATGTGTGCAAAGTT  100
      | ||||||| |||  ||||  || |||||||||||||||||||||||| |
seq2  AAACAAATG-AGT--AAGT--CTTAGTGTTATTCCTATGTGTGCAAAG-T  87

seq1  GACATGTTTTAAAAGCCTAGTCAAATGCACTTGAGCAGGGCGTGGTGGCA  150
      |||||||||   ||| ||||||||||||||||||||||||||||||||||
seq2  GACATGTTT---AAG-CTAGTCAAATGCACTTGAGCAGGGCGTGGTGGCA  133

seq1  CACGCCTTTGATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCTTTGATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAG  183

seq1  TTCGAGGCCAGCCTGGTCTACAGAGTGAGTCCCAGGACAGCCAGGACTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGGCCAGCCTGGTCTACAGAGTGAGTCCCAGGACAGCCAGGACTAC  233

seq1  A-CAGAGAAACCCTGTCTCGAAAAAAAAAAAAAAAAAAGAAAAGAAAAAA  299
      | ||||||||||||||||||||||||||||||||||||||||   |||||
seq2  ACCAGAGAAACCCTGTCTCGAAAAAAAAAAAAAAAAAAGAAA--GAAAAA  281

seq1  AAAGAAAAAAAAAGAAGAAGCTAGAGGAGCGTACACAAGAATGAGCATCA  349
      ||||||||||||   |||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAAAA--GAGAAGCTAGAGGAGCGTACACAAGAATGAGCATCA  329

seq1  ATCTGCCTGCATAATAAATGTCTACCAGATTCTGGTATCTTTACTTGAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCTGCATAATAAATGTCTACCAGATTCTGGTATCTTTACTTGAGT  379

seq1  TTTGTTCTGATTTACTATAATGCTGTTCTGATTTTTTTTTTATTTCATAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTGATTTACTATAATGCTGTTCTGATTTTTTTTTTATTTCATAA  429

seq1  AAACAATGAATTCCAAAGCATATCCATGACTCTCAGTATTGCAATGTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATGAATTCCAAAGCATATCCATGACTCTCAGTATTGCAATGTTTT  479

seq1  GTTGTTGTTCTGCAAAGCCAATTATTCCTTTTCATTCAATTTTTTTTTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTCTGCAAAGCCAATTATTCCTTTTCATTCAATTTTTTTTTCA  529

seq1  ATTCCATGTATTGGTGGTTGTATTTCCATTGGTTCTACAATTTTGACATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATGTATTGGTGGTTGTATTTCCATTGGTTCTACAATTTTGACATT  579

seq1  TCCAAACTGTCTTCTAAAGAATTCTCTTAATTTATTTATATGGTATTTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACTGTCTTCTAAAGAATTCTCTTAATTTATTTATATGGTATTTTT  629

seq1  TTAACTATTCTATATATGTTCAATGCATTTTGTTCTGTTTATCTTTGACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTATTCTATATATGTTCAATGCATTTTGTTCTGTTTATCTTTGACT  679

seq1  TAAGTCTTTTTTTTTTTTTTTGAGGATAACAAAGATTTATGAGAAAGTCG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTTTTTTTTTTTTTTTGAGGATAACAAAGATTTATGAGAAAGTCG  729

seq1  TGTGAATAGCAAAACACACAGGTTCTTGTAAATTAAAGGTAAACATTTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATAGCAAAACACACAGGTTCTTGTAAATTAAAGGTAAACATTTGA  779

seq1  TTTATTCTTTTTATATTCATAAGTGTGCTACAAAAATCTCCTTCCTGAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTTTTTATATTCATAAGTGTGCTACAAAAATCTCCTTCCTGAAC  829

seq1  AAATCATCTTGGATTACTCAGAAACTTTGAGAATACTATTTGCATAGATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATCTTGGATTACTCAGAAACTTTGAGAATACTATTTGCATAGATT  879

seq1  ATTTGTCTGGTAGTGAGAAAATGCCTGACTAAAAAAAAACTTATGGAAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCTGGTAGTGAGAAAATGCCTGACTAAAAAAAAACTTATGGAAGA  929

seq1  AAGACTCACAGTTTCTGGTGGTTTGAATGAAAAATATCCATAGGCCTCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCACAGTTTCTGGTGGTTTGAATGAAAAATATCCATAGGCCTCAG  979

seq1  TATTTGAACTCTTGATCCTCAGTTATTTTGCTATTTGGGGAAGTTTAAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAACTCTTGATCCTCAGTTATTTTGCTATTTGGGGAAGTTTAAAA  1029

seq1  AGTACCATGCTGGAGGATATACCTCACCAGTAACAAGCTATGAGAATTGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCATGCTGGAGGATATACCTCACCAGTAACAAGCTATGAGAATTGA  1079

seq1  AAGCAACATGCCACTTCCAGTGCCCACGTTTTGTATCATGTGCTAATATT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACATGCCACTTCCAGTGCCCACGTTTTGTATCATGTGCTAATATT  1129

seq1  GAATTC  1155
      ||||||
seq2  GAATTC  1135

seq1: chr12_49156060_49156996
seq2: B6Ng01-016I20.g_66_1005

seq1  GAATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAAAGTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAAAGTTCC  50

seq1  ACATTTTCTGTACATTCCTCTGTTGAGGGATATCAGGGTTCTTTCCACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCTGTACATTCCTCTGTTGAGGGATATCAGGGTTCTTTCCACCA  100

seq1  AACCCAGACACTGTTGCATATGCCAGAAAGATTTTGCTGACAGGATCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGACACTGTTGCATATGCCAGAAAGATTTTGCTGACAGGATCATG  150

seq1  ATATAGTTTTCTCTTGTGAGGCTATGCCAGTGTCTGGCAAATACATAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTTTTCTCTTGTGAGGCTATGCCAGTGTCTGGCAAATACATAAGT  200

seq1  GGATGCTCACAGTCATCTATAGGATGGAACACAGGGCCCCCAATGGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTCACAGTCATCTATAGGATGGAACACAGGGCCCCCAATGGAGGA  250

seq1  GCTAGAGAAAGTACCCAAGGATCTAAAGGGGTCTGCAACCCTATAGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGAAAGTACCCAAGGATCTAAAGGGGTCTGCAACCCTATAGGAGG  300

seq1  AACAACAATATGAACTAACCAGTACCCGCCAGAGTTTGTGTCTCTAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAATATGAACTAACCAGTACCCGCCAGAGTTTGTGTCTCTAGCTG  350

seq1  CATATGTAGCAGAAGATGGCCTAGTCGCCTATCAATGGGAGGAGAGGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTAGCAGAAGATGGCCTAGTCGCCTATCAATGGGAGGAGAGGCCC  400

seq1  TTGGTCTTGTGAAGATTATATGCCCTACCATTGGTATGTTGGAATGATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTTGTGAAGATTATATGCCCTACCATTGGTATGTTGGAATGATGC  450

seq1  TGTGCCAGGACACTAGACTGCCTTTAACCTAGACTTGCAGTCATTTAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCAGGACACTAGACTGCCTTTAACCTAGACTTGCAGTCATTTAGTG  500

seq1  GGCTCGAGGGAAGTGCATAGGGGGTGGGAAAATATGTCCTAAGATGAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCGAGGGAAGTGCATAGGGGGTGGGAAAATATGTCCTAAGATGAAGA  550

seq1  TGAGGTTCCCTGACAGTAGGTTCTGACACCTGCTGGAAATCACACAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTCCCTGACAGTAGGTTCTGACACCTGCTGGAAATCACACAGAGG  600

seq1  AGTCAAGAATGGAGGATCTGGGGTCCATGGTACTACAATGGAGAGCCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGAATGGAGGATCTGGGGTCCATGGTACTACAATGGAGAGCCTGG  650

seq1  GCCAGGGTGTCCCAAATATCTGGATATCCAGATGCCTTTGTGTTGCAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGTGTCCCAAATATCTGGATATCCAGATGCCTTTGTGTTGCAGGA  700

seq1  AAGGCTGAGGATAATGAGTCCCTGGGTTGATGGGTGGTGTGGAGAACTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGAGGATAATGAGTCCCTGGGTTGATGGGTGGTGTGGAGAACTCC  750

seq1  AGCTTAGCTCATCAGTGATG-TTCCTTAGCACAGAAGGACC-TTCTATGA  798
      |||||||||||||||||||| |||||||||||||||||||| || |||||
seq2  AGCTTAGCTCATCAGTGATGTTTCCTTAGCACAGAAGGACCTTTTTATGA  800

seq1  GAGACTTGGGGAGCAGCTCTGTAGATGAAAGCGTTTTCCATGCTCGCCAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTGGGGAGCAGCTCTGTAGATGAAAGCGTTTTCCATGCTCGCCAT  850

seq1  GGTAGCTCTTGATGAAAGAGCTAGTACTTGGTTCCAAACAGTTTATTAAT  898
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGTAGCTCTTGATGAAAGAGCTAGTACTTGGTTCC-AACAGTTTATTAAT  899

seq1  T-GTTCATCATGGAAAATGGATATATACCACCTC-CTCAGG  937
      | |||||||||||||||||||||||||||||||| |||| |
seq2  TGGTTCATCATGGAAAATGGATATATACCACCTCTCTCATG  940