BAC Information

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BAC

Clone NameB6Ng01-016J13
Chromosome12 (Build37)
Map Location 14,973,724 - 15,148,257
singlet/doubletdoublet
Overlap geneLOC100042426
Upstream geneAW125753, LOC100043256, Map1lc3-ps7, LOC668492
Downstream geneLOC217409, Trib2, LOC100043268, EG432636, LOC100043273
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016J13.bB6Ng01-016J13.g
ACCDH850518DH850519
length1,071899
definitionDH850518|Mus musculus domesticus DNA, BAC clone: B6Ng01-016J13, 5' end.DH850519|Mus musculus domesticus DNA, BAC clone: B6Ng01-016J13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,973,724 - 14,974,801)(15,147,447 - 15,148,257)
sequence
gaattctcaactgaggaacacttaatggcctagaaacacctaaacaaata
ttcaacatccttagtcatcagggaaatgcaaatcaaaacaaccctgagac
tccacctcacacaagtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggtgaggatgtggagaaagaggcacactcctccattgctggtg
ggattgtaagctggtacaaccattctggaaatcagtctgatgtttcctca
gagaattaaggtataacatttgaaatgtaaataaataaaatatctaataa
aaaagaacaataaagaacaaaagttacccatctgtccctagacaatatgt
agtatatctttacttaatggcccctacaattaagtatattcatgaatgta
tatttttatgtgtatctatacatatatatatatacatacataaatacata
tatatatatatgtgtgtatatatatatatatacatatatatatacacaca
cacatacagagaaagagggaaagagggagagagagagagagagagatatt
aaaatacaagttttctagagttctccctgattatttctctggatcattac
tgcagcaaagtaaacatttgtcactcatcacattcctctaccttgttgtt
ctgcctgacctcatgctaaaacttgtggaaattctgaccattattgagac
cactggaattatgtgcccctttaaatgtttgtagggaaaaatgatgtgat
tatattataatctcagataataaagtgcataattcaaaatataaaaaagt
atgcactgagctttacaaaaatatgagctgagtataagatttgttattca
ataaaattgcagagaataaaaacaaatggttctattgagaaatatattac
tcaattgattaaaaactcacttgtgctatgaactgagttatgtcactctc
tatttcaatgtattatgcatataggcaataattaaaaacaactggcaaga
ataatcatagtaaagcagtagttattttctggaataaataaatttgagcg
aacttagactatcaggagcta
gaattctggctaaggtgaggaaaaagaatgtgcctaagtttaagagtcca
gagtatttaggacatttctgagagaggacacatatattagtgacacttga
gttgtgaaatgaaggcaggtgaaagaacaatagtattatcataaagagag
attagggagatgagtctcagaaggttgaagaaacttatttaccctggaaa
ggtatcgtgtccagctatggacaaaggtttccagggtcccagaaaattta
ggatctctacatgtctcagaggtgagaggatcgtccatgtttgtattcta
gcaattgtctatacttttctttctttcttcctgtctttcttccttccttc
cttccttccttccttcctttctctctctctctctccctccctccctctct
ctttctctcttcctctcttcctctcttcctctcttcctctcttcctccct
tcctcccttcctcccttcctcccttcctcccttcctcccttcctctcttc
ctcccttcctcccttcctcccttcctcccttcctcccttcctctcttcct
ctcttctcttcctgccttcctctcttcttcttctctctctctccctgcct
ccttccctccctctctctctctctctttctctttctttctttcttttttt
ctttctttctttctgtctctcactctcttgctctctttctttttcccatc
aacttggcacatgctagagtcatctaagaagaaagaatgaggagcaagct
aataagcaacactcctccatggcctctgcttcagttcctaccttgggctc
ttaggctgaattccctagtgatagagtgtgaattgcaattgcgagttgta
atgaaataaaccctttcttccccaagttagccatgttaaccatttttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_14973724_14974801
seq2: B6Ng01-016J13.b_47_1117

seq1  GAATTCTCAACTGAGGAACACTTAATGGCCTAGAAACACCTAAACAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAACTGAGGAACACTTAATGGCCTAGAAACACCTAAACAAATA  50

seq1  TTCAACATCCTTAGTCATCAGGGAAATGCAAATCAAAACAACCCTGAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATCCTTAGTCATCAGGGAAATGCAAATCAAAACAACCCTGAGAC  100

seq1  TCCACCTCACACAAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCACACAAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGC  150

seq1  AGATGCTGGTGAGGATGTGGAGAAAGAGGCACACTCCTCCATTGCTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGGTGAGGATGTGGAGAAAGAGGCACACTCCTCCATTGCTGGTG  200

seq1  GGATTGTAAGCTGGTACAACCATTCTGGAAATCAGTCTGATGTTTCCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGTAAGCTGGTACAACCATTCTGGAAATCAGTCTGATGTTTCCTCA  250

seq1  GAGAATTAAGGTATAACATTTGAAATGTAAATAAATAAAATATCTAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTAAGGTATAACATTTGAAATGTAAATAAATAAAATATCTAATAA  300

seq1  AAAAGAACAATAAAGAACAAAAGTTACCCATCTGTCCCTAGACAATATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACAATAAAGAACAAAAGTTACCCATCTGTCCCTAGACAATATGT  350

seq1  AGTATATCTTTACTTAATGGCCCCTACAATTAAGTATATTCATGAATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATCTTTACTTAATGGCCCCTACAATTAAGTATATTCATGAATGTA  400

seq1  TATTTTTATGTGTATCTATACATATATATATATACATACATAAATACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTATGTGTATCTATACATATATATATATACATACATAAATACATA  450

seq1  TATATATATATGTGTGTATATATATATATATACATATATATATACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATGTGTGTATATATATATATATACATATATATATACACACA  500

seq1  CACATACAGAGAAAGAGGGAAAGAGGGAGAGAGAGAGAGAGAGAGATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACAGAGAAAGAGGGAAAGAGGGAGAGAGAGAGAGAGAGAGATATT  550

seq1  AAAATACAAGTTTTCTAGAGTTCTCCCTGATTATTTCTCTGGATCATTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACAAGTTTTCTAGAGTTCTCCCTGATTATTTCTCTGGATCATTAC  600

seq1  TGCAGCAAAGTAAACATTTGTCACTCATCACATTCCTCTACCTTGTTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCAAAGTAAACATTTGTCACTCATCACATTCCTCTACCTTGTTGTT  650

seq1  CTGCCTGACCTCATGCTAAAACTTGTGGAAATTCTGACCATTATTGAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGACCTCATGCTAAAACTTGTGGAAATTCTGACCATTATTGAGAC  700

seq1  CACTGGAATTATGTGCCCCTTTAAATGTTTGTAGGGAAAAATGATGTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGAATTATGTGCCCCTTTAAATGTTTGTAGGGAAAAATGATGTGAT  750

seq1  TATATTATAATCTCAGATAATAAAGTGCATAATTCAAAATATAAAAAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTATAATCTCAGATAATAAAGTGCATAATTCAAAATATAAAAAAGT  800

seq1  ATGCACTGAGCTTTACAAAAATATGAGCTGAGTATAAGATTTGTTATTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTGAGCTTTACAAAAATATGAGCTGAGTATAAGATTTGTTATTCA  850

seq1  ATAAAATTGCAGAGAATAAAAACAAATGGTTCTATTGAGAAATATATTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTGCAGAGAATAAAAACAAATGGTTCTATTGAGAAATATATTAC  900

seq1  TCAATTGATTAAAAACTCACTTGTGCTATGAACTGAGTTATGTCACTCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGATTAAAAACTCACTTGTGCTATGAACTGAGTTATGTCACTCTC  950

seq1  TATTTCAATGTATTATGCAATATAGGCAATAAATTAAAAACAACTGGCAC  1000
      |||||||||||||||||| ||||||||||| |||||||||||||||||| 
seq2  TATTTCAATGTATTATGC-ATATAGGCAAT-AATTAAAAACAACTGGCA-  997

seq1  AGAATAATCATAAGTAAAGCAGTAGTTATTTTCTGGAATAAAATAATTTG  1050
      ||||||||||| ||||||||||||||||||||||||||||||  ||||||
seq2  AGAATAATCAT-AGTAAAGCAGTAGTTATTTTCTGGAATAAATAAATTTG  1046

seq1  GAAGCAGAACTAAGACTATCAGGAGCTA  1078
        ||| ||||| ||||||||||||||||
seq2  --AGC-GAACTTAGACTATCAGGAGCTA  1071

seq1: chr12_15147447_15148257
seq2: B6Ng01-016J13.g_67_878 (reverse)

seq1  AATTCAGCCTAAGAGCCCAAGGTAGGAACTGAAGCAGAGGCCATGGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGCCTAAGAGCCCAAGGTAGGAACTGAAGCAGAGGCCATGGAGGA  50

seq1  GTGTTGCTTATTAGCTTGCTCCTCATTCTTTCTTCTTAGATGACTCTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGCTTATTAGCTTGCTCCTCATTCTTTCTTCTTAGATGACTCTAGC  100

seq1  ATGTGCCAAGTTGAT-GGAAAAAGAAAGAGAGCAAGAGAGTGAGAGAAAG  149
      ||||||||||||||| ||||||||||||||||||||||||||||||| ||
seq2  ATGTGCCAAGTTGATGGGAAAAAGAAAGAGAGCAAGAGAGTGAGAGACAG  150

seq1  AAAGAAAGAAAGAAAAAAAGAAAGAAAGAAAGAGAAAGAGAGAGAGAGAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAAAAAGAAAGAAAGAAAGAGAAAGAGAGAGAGAGAG  200

seq1  AGGGAGGGAAGGAGGCAGGGAGAGAGAGAGAAGAAGAAGAGAGGAAGGCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGGAAGGAGGCAGGGAGAGAGAGAGAAGAAGAAGAGAGGAAGGCA  250

seq1  GGAAGAGAAGAGAGGAAGAGAGGAAGGGAGGAAGGGAGGAAGGGAGGAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGAAGAGAGGAAGAGAGGAAGGGAGGAAGGGAGGAAGGGAGGAAG  300

seq1  GGAGGAAGGGAGGAAGAGAGGAAGGGAGGAAGGGAGGAAGGGAGGAAGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAGGGAGGAAGAGAGGAAGGGAGGAAGGGAGGAAGGGAGGAAGGG  350

seq1  AGGAAGGGAGGAAGGGAGGAAGAGAGGAAGAGAGGAAGAGAGGAAGAGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGGAGGAAGGGAGGAAGAGAGGAAGAGAGGAAGAGAGGAAGAGAG  400

seq1  GAAGAGAGAAAGAGAGAGGGAGGGAGGGAGAGAGAGAGAGAGAAAGGAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGAAAGAGAGAGGGAGGGAGGGAGAGAGAGAGAGAGAAAGGAAG  450

seq1  GAAGGAAGGAAGGAAGGAAGGAAGAAAGACAGGAAGAAAGAAAGAAAAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGGAAGGAAGGAAGGAAGAAAGACAGGAAGAAAGAAAGAAAAGT  500

seq1  ATAGACAATTGCTAGAATACAAACATGGACGATCCTCTCACCTCTGAGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAATTGCTAGAATACAAACATGGACGATCCTCTCACCTCTGAGAC  550

seq1  ATGTAGAGATCCTAAATTTTCTGGGACCCTGGAAACCTTTGTCCATAGCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAGATCCTAAATTTTCTGGGACCCTGGAAACCTTTGTCCATAGCT  600

seq1  GGACACGATACCTTTCCAGGGTAAATAAGTTTCTTCAACCTTCTGAGACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACGATACCTTTCCAGGGTAAATAAGTTTCTTCAACCTTCTGAGACT  650

seq1  CATCTCCCTAATCTCTCTTTATGATAATACTATTGTTCTTTCACCTGCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCCTAATCTCTCTTTATGATAATACTATTGTTCTTTCACCTGCCT  700

seq1  TCATTTCACAACTCAAGTGTCACTAATATATGTGTCCTCTCTCAGAAATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCACAACTCAAGTGTCACTAATATATGTGTCCTCTCTCAGAAATG  750

seq1  TCCTAAATACTCTGGACTCTTAAACTTAGGCACATTCTTTTTCCTCACCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAATACTCTGGACTCTTAAACTTAGGCACATTCTTTTTCCTCACCT  800

seq1  TAGCCAGAATTC  811
      ||||||||||||
seq2  TAGCCAGAATTC  812