BAC Information

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BAC

Clone NameB6Ng01-016K12
Chromosome12 (Build37)
Map Location 47,841,956 - 47,983,315
singlet/doubletdoublet
Overlap geneNova1
Upstream geneLOC664952
Downstream geneLOC100039190, EG664891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016K12.bB6Ng01-016K12.g
ACCDH850560DH850561
length1,070564
definitionDH850560|Mus musculus domesticus DNA, BAC clone: B6Ng01-016K12, 5' end.DH850561|Mus musculus domesticus DNA, BAC clone: B6Ng01-016K12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,982,228 - 47,983,315)(47,841,956 - 47,842,525)
sequence
gaattcagcagcattcagaggaaatggctttaggaacataaaagttaatc
tatcatgctaaaagatcattgaaaacactattttataagccaaattgatg
gcagctatattaaccaaaatacatttgcaaaggaaattttaaagaagtat
atctttatttccattagatgaaagtgtgtgcatgcctccactcatatata
tgcagttaaaattgtagaatattttatagcttgaaagaacttaattatga
agtccagcactttcattttatgcataaagatactaacgcctagcaaagtc
agactaaataacatgtctaacatctagttaatagcgcttcccacaccacg
gctcttttctgatgttacttcgtgtctgatgctatttcatttctataaca
aaaatctattgaacgatttctctgtgggctgaggcaatggtagatggaag
aaaccagctccccacaagcccaaaatacaagacaaattgattacacaagt
aaagactgatcaagccttaggttatcacgtttttcttagtatttgaatgg
cttaagtgcctgtcctgtgcacacatattgacgcctttgctaacctttaa
actcaaagtcctgattttttgttatgcccatgtatctagttgctttattg
ttgctttggtaaaaatactctgacaaaagcaacttaagggagagagggta
ttacatagcaggaggcagaaggcatggcaacaatatccacatccaggaaa
tggagagtgcaaagaaagttgagtaggtctataaaccctcaacccctgcc
tgcctaccgtggtccactgcttcaataaaagctcaatatcctaaggttcc
acagccttcagaacaactaaaatgcaagtgttcaaaacatgagcctgggg
ggtggggggcattgcacattcaaagcacaacactgttatcattttggtat
cagatcacattgaaatggaatccgtatactttactcacattctcacagca
tcacacaagttttatctttaatgagtttctctcaaattgatatatggata
actcaatcatggtgagccct
ttcaggcatgggatccacagagttcatgctttcctgcagggcttcagtca
tgttgtgtctgtgttaaattcactgctggagactttaaacattttattta
tttgtgtgcatgacagagggtgagagagaaacaggaggatggggacagag
ggagagtgtgagtgtgggagcatgagggtcacatatgtgagggtcagagg
cccattttcaggagttctcttagttggttctggaaatcaaactctacaca
ggaagtataaatttcactgttaaccttgaaaagtctgaggaataaattaa
accacagcatattaggcctagaaatttttaaaattgagattagcttttca
aattaagtagtgattttaatattcatatggaaattgcatacacttttaca
aatttgaaaggaacaagattagagtatgaggcattaagtattaaaaattc
catagaataattataacactgttatcatacaaatgcagaatcatacttta
ctgtgtttgcatgtgagtaagtgtgggtgcgtgcatgtgtgtgaatgcag
gtgtaaatgtgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_47982228_47983315
seq2: B6Ng01-016K12.b_43_1112 (reverse)

seq1  AGGGCTACCACCATGATTTTGAGTTTATCCATTATATCCATTTTTGAGAG  50
      ||||||  ||||||||  ||||| ||||||| |||||| |  ||||||||
seq2  AGGGCT--CACCATGA--TTGAG-TTATCCA-TATATCAA--TTTGAGAG  42

seq1  AAACTCAATTAAAGATTAAAACTTTGTGTGAATGCTGTGGAGAATGTGAG  100
      |||||| |||||||| |||||| ||||||| ||||||| |||||||||| 
seq2  AAACTC-ATTAAAGA-TAAAAC-TTGTGTG-ATGCTGT-GAGAATGTGA-  86

seq1  GTAAAGTATACGGATTCCATTTTCAATGTGATCTGATAACCAAAATGAAT  150
      ||||||||||||||||||| ||||||||||||||||| ||||||||| ||
seq2  GTAAAGTATACGGATTCCA-TTTCAATGTGATCTGAT-ACCAAAATG-AT  133

seq1  AACAGTGTTGTGCTTTGAATGTGCAATGCCCCCCACCCCCCAGGCTCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGTTGTGCTTTGAATGTGCAATGCCCCCCACCCCCCAGGCTCATG  183

seq1  TTTTTGAACACTTGCATTTTAGTTGTTCTGAAGGCTGTGGAACCTTAGGA  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTTGAACACTTGCATTTTAGTTGTTCTGAAGGCTGTGGAACCTTAGGA  232

seq1  TATTGAGCTTTTATTGAAGCAGTGGACCACGGTAGGCAGGCAGGGGTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGCTTTTATTGAAGCAGTGGACCACGGTAGGCAGGCAGGGGTTGA  282

seq1  GGGTTTATAGACCTACTCAACTTTCTTTGCACTCTCCATTTCCTGGATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTATAGACCTACTCAACTTTCTTTGCACTCTCCATTTCCTGGATGT  332

seq1  GGATATTGTTGCCATGCCTTCTGCCTCCTGCTATGTAATACCCTCTCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTGTTGCCATGCCTTCTGCCTCCTGCTATGTAATACCCTCTCTCC  382

seq1  CTTAAGTTGCTTTTGTCAGAGTATTTTTACCAAAGCAACAATAAAGCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTTGCTTTTGTCAGAGTATTTTTACCAAAGCAACAATAAAGCAAC  432

seq1  TAGATACATGGGCATAACAAAAAATCAGGACTTTGAGTTTAAAGGTTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACATGGGCATAACAAAAAATCAGGACTTTGAGTTTAAAGGTTAGC  482

seq1  AAAGGCGTCAATATGTGTGCACAGGACAGGCACTTAAGCCATTCAAATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCGTCAATATGTGTGCACAGGACAGGCACTTAAGCCATTCAAATAC  532

seq1  TAAGAAAAACGTGATAACCTAAGGCTTGATCAGTCTTTACTTGTGTAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAAACGTGATAACCTAAGGCTTGATCAGTCTTTACTTGTGTAATC  582

seq1  AATTTGTCTTGTATTTTGGGCTTGTGGGGAGCTGGTTTCTTCCATCTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTCTTGTATTTTGGGCTTGTGGGGAGCTGGTTTCTTCCATCTACC  632

seq1  ATTGCCTCAGCCCACAGAGAAATCGTTCAATAGATTTTTGTTATAGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTCAGCCCACAGAGAAATCGTTCAATAGATTTTTGTTATAGAAAT  682

seq1  GAAATAGCATCAGACACGAAGTAACATCAGAAAAGAGCCGTGGTGTGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGCATCAGACACGAAGTAACATCAGAAAAGAGCCGTGGTGTGGGA  732

seq1  AGCGCTATTAACTAGATGTTAGACATGTTATTTAGTCTGACTTTGCTAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTATTAACTAGATGTTAGACATGTTATTTAGTCTGACTTTGCTAGG  782

seq1  CGTTAGTATCTTTATGCATAAAATGAAAGTGCTGGACTTCATAATTAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAGTATCTTTATGCATAAAATGAAAGTGCTGGACTTCATAATTAAGT  832

seq1  TCTTTCAAGCTATAAAATATTCTACAATTTTAACTGCATATATATGAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAAGCTATAAAATATTCTACAATTTTAACTGCATATATATGAGTG  882

seq1  GAGGCATGCACACACTTTCATCTAATGGAAATAAAGATATACTTCTTTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCATGCACACACTTTCATCTAATGGAAATAAAGATATACTTCTTTAA  932

seq1  AATTTCCTTTGCAAATGTATTTTGGTTAATATAGCTGCCATCAATTTGGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCTTTGCAAATGTATTTTGGTTAATATAGCTGCCATCAATTTGGC  982

seq1  TTATAAAATAGTGTTTTCAATGATCTTTTAGCATGATAGATTAACTTTTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAATAGTGTTTTCAATGATCTTTTAGCATGATAGATTAACTTTTA  1032

seq1  TGTTCCTAAAGCCATTTCCTCTGAATGCTGCTGAATTC  1088
      ||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTAAAGCCATTTCCTCTGAATGCTGCTGAATTC  1070

seq1: chr12_47841956_47842525
seq2: B6Ng01-016K12.g_67_636

seq1  GAATTCTTCAGGCATGGGATCCACAGAGTTCATGCTTTCCTGCAGGGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGGCATGGGATCCACAGAGTTCATGCTTTCCTGCAGGGCTT  50

seq1  CAGTCATGTTGTGTCTGTGTTAAATTCACTGCTGGAGACTTTAAACATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATGTTGTGTCTGTGTTAAATTCACTGCTGGAGACTTTAAACATTT  100

seq1  TATTTATTTGTGTGCATGACAGAGGGTGAGAGAGAAACAGGAGGATGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTGTGTGCATGACAGAGGGTGAGAGAGAAACAGGAGGATGGGG  150

seq1  ACAGAGGGAGAGTGTGAGTGTGGGAGCATGAGGGTCACATATGTGAGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGGAGAGTGTGAGTGTGGGAGCATGAGGGTCACATATGTGAGGGT  200

seq1  CAGAGGCCCATTTTCAGGAGTTCTCTTAGTTGGTTCTGGAAATCAAACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCCCATTTTCAGGAGTTCTCTTAGTTGGTTCTGGAAATCAAACTC  250

seq1  TACACAGGAAGTATAAATTTCACTGTTAACCTTGAAAAGTCTGAGGAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGGAAGTATAAATTTCACTGTTAACCTTGAAAAGTCTGAGGAATA  300

seq1  AATTAAACCACAGCATATTAGGCCTAGAAATTTTTAAAATTGAGATTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAACCACAGCATATTAGGCCTAGAAATTTTTAAAATTGAGATTAGC  350

seq1  TTTTCAAATTAAGTAGTGATTTTAATATTCATATGGAAATTGCATACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAATTAAGTAGTGATTTTAATATTCATATGGAAATTGCATACACT  400

seq1  TTTACAAATTTGAAAGGAACAAGATTAGAGTATGAGGCATTAAGTATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAATTTGAAAGGAACAAGATTAGAGTATGAGGCATTAAGTATTAA  450

seq1  AAATTCCATAGAATAATTATAACACTGTTATCATACAAATGCAGAATCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCATAGAATAATTATAACACTGTTATCATACAAATGCAGAATCAT  500

seq1  ACTTTACTGTGTTTGCATGTGAGTAAGTGTGGGTGCGTGCATGTGTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACTGTGTTTGCATGTGAGTAAGTGTGGGTGCGTGCATGTGTGTGA  550

seq1  ATGTAGGTGTAAATGTGCTG  570
      ||| ||||||||||||||||
seq2  ATGCAGGTGTAAATGTGCTG  570