BAC Information

Click to search

BAC

Clone NameB6Ng01-018B08
Chromosome12 (Build37)
Map Location 32,631,616 - 32,631,846
singlet/doubletsinglet
Overlap geneHbp1
Upstream geneSh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
Downstream genePrkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018B08.bB6Ng01-018B08.g
ACCDH851582DH851583
length6151,165
definitionDH851582|Mus musculus domesticus DNA, BAC clone: B6Ng01-018B08, 5' end.DH851583|Mus musculus domesticus DNA, BAC clone: B6Ng01-018B08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttagcttagcccagaaacttagaatacccaagatacaag
atacaatttgcaaaacacatgaaactcaagaagaatgaagatgaaagtgt
ggacactttgcctcttcttaaaattgggaacaaaaaacctatgaaaagag
ttacagagacaaagtttggagctgaggtgaaaggatggaccatctagaga
ctgccatacccagagagccatcccataatcagcctccaaatgctgacacc
attgcacacactagcaagattttgctgaaaggacccggatatagctgtct
ctagtgatagaggcaatgccggggcctagcaaacacagaagtggatgctc
acagtcagctattggatggaacacagggcccccaatggaggagctagagc
aagtacccaaggagctaaaggggtctgcaaccctataggtggaacgacaa
tatgaactaaccaatacccccccccccccgccccagagcttgtgtctcta
tctacatatgtatcagaagatggcctagtaggccatcattggaaagagag
gcccattggtcttgcaaactttatatgcctcagtacagggtaatgccagg
gccaagaagtgggag
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atgaggagctagagaaagtagccaagagctaaagggatcttcaccctata
gttgaacatcattatgaactaaccagtacccctgagctcttgactcctag
ctgctatgtatcaaagaatggcctagtcggcatcactgaaaagaaagccc
atgacacacgacttttgtgcccggtactaggaaacccaaggctaaagtgg
gggagtagttgggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32631616_32631846
seq2: B6Ng01-018B08.b_370_659 (reverse)

seq1  CTCCCACTTCTTGGCCCTG-------------------------------  19
      |||||||||||||||||||                               
seq2  CTCCCACTTCTTGGCCCTGGCATTACCCTGTACTGAGGCATATAAAGTTT  50

seq1  GCAAGACCCATGGGCCTCTCTTTCCACTGA----------------CTTC  53
      |||||||| ||||||||||||||||| |||                ||||
seq2  GCAAGACCAATGGGCCTCTCTTTCCAATGATGGCCTACTAGGCCATCTTC  100

seq1  TGATACATACGCAGCTAGAGACACGAGCTC-------------CGGGGGT  90
      ||||||||| | || ||||||||| |||||              ||||||
seq2  TGATACATATGTAGATAGAGACACAAGCTCTGGGGCGGGGGGGGGGGGGT  150

seq1  ACTGGTCAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGACCCCTTTA  140
      | |||| |||||||| ||| ||||||||||||||||||||||||||||||
seq2  ATTGGTTAGTTCATATTGTCGTTCCACCTATAGGGTTGCAGACCCCTTTA  200

seq1  GCTCCTTGGGTACTTTCTCTAACTCCTCCATTGGGGACCCTGTGATCCTA  190
      ||||||||||||||| ||||| |||||||||||||| ||||||| ||| |
seq2  GCTCCTTGGGTACTTGCTCTAGCTCCTCCATTGGGGGCCCTGTGTTCC-A  249

seq1  TCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAG  231
      |||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAG  290