BAC Information

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BAC

Clone NameB6Ng01-018E08
Chromosome12 (Build37)
Map Location 99,869,984 - 100,017,141
singlet/doubletdoublet
Overlap geneSpata7, Ptpn21, Zc3h14
Upstream geneLOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746, Galc, Gpr65, Kcnk10
Downstream geneEml5, LOC100039845, Ttc8, EG667779, Ches1, LOC100039892, 2610021K21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018E08.bB6Ng01-018E08.g
ACCDH851718DH851719
length1,0481,068
definitionDH851718|Mus musculus domesticus DNA, BAC clone: B6Ng01-018E08, 5' end.DH851719|Mus musculus domesticus DNA, BAC clone: B6Ng01-018E08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,016,090 - 100,017,141)(99,869,984 - 99,871,058)
sequence
gaattcaaatagtcctttcctcacatgatacattacaaatgcctttcttt
gcctaaggcagagaagggttttcctatatcacatctgttgggatattaaa
agcacagtaaaaggacaacagttactttttattccaaaatcagaaagaat
ttaagaaatcttaatgtttcctaaaattatgtttcaaaactgttcaacta
ctttccccaaacgagttctattcatttttcacagtaatatttaaaggaaa
tactgcctattaagaattcacttggaataatttctaaccaggtaaacata
gaaaactattttgaaaggaaactttaagatgaatgtatcacactaatctt
caatgcaagtcaccacaagctcaaatcatctactggctgtctacttcaca
aaatgtagcaagaactgagttcagagtgggtatgataacctatcagtata
caatcaagaccaaattcaggctattaattcactgaatatttatttactgt
acaactaaatactgtgctaggaacgcagataaaggaaaagaaaatcagaa
acatacaattctaaaacaacaaagcccagaaagggaatgaagaggtgttg
gtagaacacaaggtacttcctccagctgataggtcaaagaagtgttggct
gaagtcgaatatgtaaaatgagtattaaaggaatgtgtaagaggagagca
gagagtgagagagccaatgcaggcagaggaaacacatggagcaaggaagg
ggacttcacagaacattaagaaaaggtgagaaatgtgaaatggctaaaaa
gatgcatgtgatggtgtgacggggtaagaaagactgaagaaatgcaatga
tggatcatgtgcctaagtatttgaattctggtctagaaatattaagagat
tcctaagtagggaagaaacacaattaacaggtttctaggaaacaaagtta
acatatctcctctcatgttggttatggttatcaccaccttctgttccagc
actcaggaagcagaggcaggaatgcttgacctcaagggatcctgatct
gaattcaaagatctacctgcctctgcctctgaactgctgggattataggt
atgcaccaccatgcctagctgaataaaagtttcagcaactttatttaaaa
ataaatgtgttctttttaaaattctatattgttttttatgaaagttgtgt
ttgccgtgtcctaatttgtgtttttcttgttgttgaaagtcagagcaacc
tctgtcctccccagatacagccctccatgcttgtttacaggacacctgag
caccaagagcaacggtaagtgagcggcttacagctggagctgcgttagaa
actcactgttctctgtgttgggcgtcccgtgacctgaggacgaagctctc
ttaaggaaaacttactgcacttcatgccagcaattagaactaaatgtcgt
aggcattctttggactcagtttgggggtcataatgtcgaactgttgttgt
gccctgattgtgaacctagctgcccctgctttcccaccctgccacaacca
ggggctacttttgccagcacacggtctggttgaaggcatgtctgccttat
taagttgatgattgtcaagtaataaaggtctccaaagtaaaattttaatt
ataacttaaatatttttggcattggttttaggaaaaacaatttaaaccca
ttgttcttatttctatgaaaaatatttcatattgtcccctccaaataaga
aaaaaatgatgaaatttttaattatttcatttttatttctttgtaccaga
gtgtattcatagaaacagctaggaaagcctatttaaaaaacaaacaaaca
aacaaacaaacaaacaaaaccaagcaaacaaacctttgaagcaatatctg
gtggtgcaaacctgcaataccagtatctgaaagactgaggcaggaggata
gtaagtttatggcctgcctggctaatagcttgagatcaaggcatttctgg
aacttaatgaagacttttctcaaaaaaaaaaaaaaaaaaagtaagagtgt
tgggcttaaaacttcagggtcgagggtttgcaaagctctagtcaatcttc
tggagggcatggcgcgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_100016090_100017141
seq2: B6Ng01-018E08.b_46_1093 (reverse)

seq1  AGATCAGGATACCCTTGGAGTCAAGCATTCCCTGCCTCTGCCTCCTGAGT  50
      |||||||||| ||||||  |||||||||| ||||||||||| ||||||||
seq2  AGATCAGGAT-CCCTTGAGGTCAAGCATT-CCTGCCTCTGCTTCCTGAGT  48

seq1  GCTGGGACTGAAGGTGTGTATAACCATACCCACCATGAGAAGAAGATATG  100
      ||||| || |||||||   ||||||||| ||| |||||| || |||||||
seq2  GCTGGAACAGAAGGTGGTGATAACCATAACCAACATGAG-AGGAGATATG  97

seq1  TTAACTTTGTTTCCTAGAAACCTGTTGATTGTGTTTCTTCCCTACTTAGG  150
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTAACTTTGTTTCCTAGAAACCTGTTAATTGTGTTTCTTCCCTACTTAGG  147

seq1  AATCTCTTAATATTTCTAGACCAGAATTCAAAATACTTAGGCACATGATC  200
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AATCTCTTAATATTTCTAGACCAGAATTC-AAATACTTAGGCACATGATC  196

seq1  CATCATTGCATTTCTTCAGTCTTTCTTACCCCGTCACACCATCACATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTGCATTTCTTCAGTCTTTCTTACCCCGTCACACCATCACATGCA  246

seq1  TCTTTTTAGCCATTTCACATTTCTCACCTTTTCTTAATGTTCTGTGAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTAGCCATTTCACATTTCTCACCTTTTCTTAATGTTCTGTGAAGT  296

seq1  CCCCTTCCTTGCTCCATGTGTTTCCTCTGCCTGCATTGGCTCTCTCACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCCTTGCTCCATGTGTTTCCTCTGCCTGCATTGGCTCTCTCACTC  346

seq1  TCTGCTCTCCTCTTACACATTCCTTTAATACTCATTTTACATATTCGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCTCCTCTTACACATTCCTTTAATACTCATTTTACATATTCGACT  396

seq1  TCAGCCAACACTTCTTTGACCTATCAGCTGGAGGAAGTACCTTGTGTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCAACACTTCTTTGACCTATCAGCTGGAGGAAGTACCTTGTGTTCT  446

seq1  ACCAACACCTCTTCATTCCCTTTCTGGGCTTTGTTGTTTTAGAATTGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACACCTCTTCATTCCCTTTCTGGGCTTTGTTGTTTTAGAATTGTAT  496

seq1  GTTTCTGATTTTCTTTTCCTTTATCTGCGTTCCTAGCACAGTATTTAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGATTTTCTTTTCCTTTATCTGCGTTCCTAGCACAGTATTTAGTT  546

seq1  GTACAGTAAATAAATATTCAGTGAATTAATAGCCTGAATTTGGTCTTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTAAATAAATATTCAGTGAATTAATAGCCTGAATTTGGTCTTGAT  596

seq1  TGTATACTGATAGGTTATCATACCCACTCTGAACTCAGTTCTTGCTACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACTGATAGGTTATCATACCCACTCTGAACTCAGTTCTTGCTACAT  646

seq1  TTTGTGAAGTAGACAGCCAGTAGATGATTTGAGCTTGTGGTGACTTGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAAGTAGACAGCCAGTAGATGATTTGAGCTTGTGGTGACTTGCAT  696

seq1  TGAAGATTAGTGTGATACATTCATCTTAAAGTTTCCTTTCAAAATAGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATTAGTGTGATACATTCATCTTAAAGTTTCCTTTCAAAATAGTTT  746

seq1  TCTATGTTTACCTGGTTAGAAATTATTCCAAGTGAATTCTTAATAGGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTTTACCTGGTTAGAAATTATTCCAAGTGAATTCTTAATAGGCAG  796

seq1  TATTTCCTTTAAATATTACTGTGAAAAATGAATAGAACTCGTTTGGGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCTTTAAATATTACTGTGAAAAATGAATAGAACTCGTTTGGGGAA  846

seq1  AGTAGTTGAACAGTTTTGAAACATAATTTTAGGAAACATTAAGATTTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTGAACAGTTTTGAAACATAATTTTAGGAAACATTAAGATTTCTT  896

seq1  AAATTCTTTCTGATTTTGGAATAAAAAGTAACTGTTGTCCTTTTACTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTTCTGATTTTGGAATAAAAAGTAACTGTTGTCCTTTTACTGTG  946

seq1  CTTTTAATATCCCAACAGATGTGATATAGGAAAACCCTTCTCTGCCTTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATATCCCAACAGATGTGATATAGGAAAACCCTTCTCTGCCTTAG  996

seq1  GCAAAGAAAGGCATTTGTAATGTATCATGTGAGGAAAGGACTATTTGAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAAAGGCATTTGTAATGTATCATGTGAGGAAAGGACTATTTGAAT  1046

seq1  TC  1052
      ||
seq2  TC  1048

seq1: chr12_99869984_99871058
seq2: B6Ng01-018E08.g_66_1133

seq1  GAATTCAAAGATCTACCTGCCTCTGCCTCTGAACTGCTGGGATTATAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGATCTACCTGCCTCTGCCTCTGAACTGCTGGGATTATAGGT  50

seq1  ATGCACCACCATGCCTAGCTGAATAAAAGTTTCAGCAACTTTATTTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCACCATGCCTAGCTGAATAAAAGTTTCAGCAACTTTATTTAAAA  100

seq1  ATAAATGTGTTCTTTTTAAAATTCTATATTGTTTTTTATGAAAGTTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTGTTCTTTTTAAAATTCTATATTGTTTTTTATGAAAGTTGTGT  150

seq1  TTGCCGTGTCCTAATTTGTGTTTTTCTTGTTGTTGAAAGTCAGAGCAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCGTGTCCTAATTTGTGTTTTTCTTGTTGTTGAAAGTCAGAGCAACC  200

seq1  TCTGTCCTCCCCAGATACAGCCCTCCATGCTTGTTTACAGGACACCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCTCCCCAGATACAGCCCTCCATGCTTGTTTACAGGACACCTGAG  250

seq1  CACCAAGAGCAACGGTAAGTGAGCGGCTTACAGCTGGAGCTGCGTTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGAGCAACGGTAAGTGAGCGGCTTACAGCTGGAGCTGCGTTAGAA  300

seq1  ACTCACTGTTCTCTGTGTTGGGCGTCCCGTGACCTGAGGACGAAGCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTGTTCTCTGTGTTGGGCGTCCCGTGACCTGAGGACGAAGCTCTC  350

seq1  TTAAGGAAAACTTACTGCACTTCATGCCAGCAATTAGAACTAAATGTCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAAAACTTACTGCACTTCATGCCAGCAATTAGAACTAAATGTCGT  400

seq1  AGGCATTCTTTGGACTCAGTTTGGGGGTCATAATGTCGAACTGTTGTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTCTTTGGACTCAGTTTGGGGGTCATAATGTCGAACTGTTGTTGT  450

seq1  GCCCTGATTGTGAACCTAGCTGCCCCTGCTTTCCCACCCTGCCACAACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGATTGTGAACCTAGCTGCCCCTGCTTTCCCACCCTGCCACAACCA  500

seq1  GGGGCTACTTTTGCCAGCACACGGTCTGGTTGAAGGCATGTCTGCCTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTACTTTTGCCAGCACACGGTCTGGTTGAAGGCATGTCTGCCTTAT  550

seq1  TAAGTTGATGATTGTCAAGTAATAAAGGTCTCCAAAGTAAAATTTTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGATGATTGTCAAGTAATAAAGGTCTCCAAAGTAAAATTTTAATT  600

seq1  ATAACTTAAATATTTTTGGCATTGGTTTTAGGAAAAACAATTTAAACCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTAAATATTTTTGGCATTGGTTTTAGGAAAAACAATTTAAACCCA  650

seq1  TTGTTCTTATTTCTATGAAAAATATTTCATATTGTCCCCTCCAAATAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTATTTCTATGAAAAATATTTCATATTGTCCCCTCCAAATAAGA  700

seq1  AAAAAATGATGAAATTTTTAATTATTTCA-TTTTATTTCTTTGTACCAGA  749
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAAAAATGATGAAATTTTTAATTATTTCATTTTTATTTCTTTGTACCAGA  750

seq1  GTGTATTCATAGAAACAGCTAGGAAAGCCTATTTAAAAAACAAACAAACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTCATAGAAACAGCTAGGAAAGCCTATTTAAAAAACAAACAAACA  800

seq1  AACAAACAAACAAACAAAACCAAGCAAACAAACCTTTGAAGCAATATCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAACAAAACCAAGCAAACAAACCTTTGAAGCAATATCTG  850

seq1  GTGGTGCAAACCTGCAATACCAGTATCTGAAAGACTGAGGCAGGAGGATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCAAACCTGCAATACCAGTATCTGAAAGACTGAGGCAGGAGGATA  900

seq1  GTAAGTTTATGGCCTGCCTGGGCTATAGCTTGAGATCAAGGCCATTCTGG  949
      |||||||||||||||||||||   ||||||||||||||||||  ||||||
seq2  GTAAGTTTATGGCCTGCCTGGCTAATAGCTTGAGATCAAGGCATTTCTGG  950

seq1  AACTTAATGAGAACTTTTCTCAAAAAAAAAAAAAAAAAAAAAGGTAAAGA  999
      ||||||||||  ||||||||||||||||||||||||||||   || ||||
seq2  AACTTAATGAAGACTTTTCTCAAAAAAAAAAAAAAAAAAA---GT-AAGA  996

seq1  GTGCTGGGGCTATATAGCTCAGGGGTCGAGGGTTTGCATAGCTCCTAGGT  1049
      ||| | ||||| || | ||   |||||||||||||||| |||| ||||  
seq2  GTG-TTGGGCT-TAAAACTTCAGGGTCGAGGGTTTGCAAAGCT-CTAG--  1041

seq1  TCAATCTTCTGGAGCGCAT-GCGCGGA  1075
      |||||||||||||| |||| |||||||
seq2  TCAATCTTCTGGAGGGCATGGCGCGGA  1068