BAC Information

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BAC

Clone NameB6Ng01-018I23
ChromosomeX (Build37)12 (Build37)
Map Location 90,163,848 - 90,164,31393,554,071 - 93,554,869
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG278087, Mageb1, EG236892, EG236893, Mageb18, EG436259, EG668061, EG546347, LOC629568
Downstream geneLOC100042663, Rp23-438h3.2, Arx, Pola1, EG629581, Pcyt1b, Pdk3, EG668103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018I23.bB6Ng01-018I23.g
ACCDH851925DH851926
length704800
definitionDH851925|Mus musculus domesticus DNA, BAC clone: B6Ng01-018I23, 5' end.DH851926|Mus musculus domesticus DNA, BAC clone: B6Ng01-018I23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(90,163,848 - 90,164,313)(93,554,071 - 93,554,869)
sequence
gaattcaccttcgtacattttacctttgatgaatatgaagtttccctcct
tatctttttttataacgttagtttgaaagttgattttacttgatattaga
atggctattcgagctgttttcttggaaccatttgcttgcaaaattatttt
ccagccttttcctctgagttagtgtctgtctttgtcactgaggtgggttt
tctgtatgcagcaaaatgtttggtcctgtttaagtaatcagtcttttagt
ctatgtctttttattagtgaattgagtccattgatattaagagatattaa
ggaaaagtaattgttgcttcctgttatttttgttgttagagttgggattc
tgttcatgtggctatattcttttagctttgttgaaaagttgcttttgctt
tttctagggcacagtttccctccttgtgttggagttttccctttataata
gttggaagggatgaatttgtaggaagatattgtgtaaatttggttctgta
atgaaataccttagtttctcaaactatggtaattgagagttttgctgggt
agagtagcctgggctggtatttgtgttctctaagtgtctgtatgacatct
gcccaggatcttctggctttcatagtctctggtgagaagtctggtgtaat
tttgataggtctgcctttatatggttacttgacattttttcccttactgc
tttt
gaattcatgatgtatttgattgatataaccacagagctcaggtaatttat
ctccccagcaatgtgttgatgcttatccctaaaaagaagatagctattat
atagaagctacttgatgcagaatctgttttcacgggctaaaaagtgttta
tattgatcaaaacatttttacttctacataaaggaaacaaagtcatcatt
atagtgagacagatggctagttagctccatgtctctgcttcatatgtgta
gttccatgaggcagcataacaactgagttatttggtaacttattagaagc
ccacaatcacagtccgtaagctagacttgctcagtcagtgttaccagaga
catgtttgagtctgtgtccatgaaaatgtaagaagacggattttagataa
gtgggcagtaaagaagttgttagaaaactgttttatctaatcttagggta
aatatacagtcattgccaaaagccccaatggctgatatgggtataatact
taactaaagttttatcatgtcacttgcaaaactatgtcatcagaaagcag
gagtttgcccttaacttcaaataccatttggtcttaccagtggcccttca
tgctctcaagttgtttaaccaaatttcttcttgctgagatcagcatatat
ttaagaaacacttattctggaaaaataatactccaaaacctgaatcaacc
tttcaatctacttgttaaaaaataaagattaaagataattttctagtgtt
tgcatgcagaatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_90163848_90164313
seq2: B6Ng01-018I23.b_283_748 (reverse)

seq1  AAAAGCAGTAAGGG-AAAAAGGTCAAGTAA-CATATAAAGGCAAGCCTAT  48
      |||||||||||||| ||||| ||||||||| ||||||||||||  |||||
seq2  AAAAGCAGTAAGGGAAAAAATGTCAAGTAACCATATAAAGGCAGACCTAT  50

seq1  CAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCT  98
      || |||||||||||| || ||||||||||||||||||||||||||| |||
seq2  CAAAATTACACCAGACTTCTCACCAGAGACTATGAAAGCCAGAAGATCCT  100

seq1  GGACAGATGTTATACAGACACTAACAGAACACAAATGCCAGCCCAGGCTA  148
      || ||||||| ||||||||||| | ||||||||||| |||||||||||||
seq2  GGGCAGATGTCATACAGACACTTAGAGAACACAAATACCAGCCCAGGCTA  150

seq1  CTATACCCAGCCAAACTCTCAATTACCATAGATGAAGAAACCAAAGTATT  198
      || |||||||| ||||||||||||||||||| |  |||||| || |||||
seq2  CTCTACCCAGCAAAACTCTCAATTACCATAGTTTGAGAAACTAAGGTATT  200

seq1  CCACGACAAAACTAAATTCACCCATTATCTCTCCATGAATCCAGCCCTTC  248
       ||  ||| ||| ||||| || || |||||  | |  ||| || ||||||
seq2  TCATTACAGAACCAAATTTACACAATATCTTCCTACAAATTCATCCCTTC  250

seq1  AAAGGATAAT-AACAGAAAAAACCAATACAAGGACGGGAACCACGCCCTA  297
       ||  || || ||  |||||  |||| ||||||| || |||   ||||||
seq2  CAACTATTATAAAGGGAAAACTCCAACACAAGGAGGGAAACTGTGCCCTA  300

seq1  GAAAAAACAAGAAGATAATCCCTCAACAAACCTAAAAGGAGACAGCCATA  347
      |||||| ||| |||  ||    |||||||| ||||||| | | ||||| |
seq2  GAAAAAGCAA-AAG-CAACTTTTCAACAAAGCTAAAAGAATATAGCCACA  348

seq1  AGAACAGAATGCCAACTTTAACAACAAAAATAACAGGAAGCAACAATTAC  397
       ||||||||| |||||| ||||||||||||||||||||||||||||||||
seq2  TGAACAGAATCCCAACTCTAACAACAAAAATAACAGGAAGCAACAATTAC  398

seq1  CTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCCAATAAAAA  447
       |||||||||||||||||||||||||||||||||||| | | ||||||||
seq2  TTTTCCTTAATATCTCTTAATATCAATGGACTCAATT-CACTAATAAAAA  447

seq1  GACATAGACTAACAGACTG  466
      |||||||||||| ||||||
seq2  GACATAGACTAAAAGACTG  466

seq1: chr12_93554071_93554869
seq2: B6Ng01-018I23.g_69_868

seq1  GAATTCATGATGTATTTGATTGATATAACCACAGAGCTCAGGTAATTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGATGTATTTGATTGATATAACCACAGAGCTCAGGTAATTTAT  50

seq1  CTCCCCAGCAATGTGTTGATGCTTATCCCTAAAAAGAAGATAGCTATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAGCAATGTGTTGATGCTTATCCCTAAAAAGAAGATAGCTATTAT  100

seq1  ATAGAAGCTACTTGATGCAGAATCTGTTTTCACGGGCTAAAAAGTGTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGCTACTTGATGCAGAATCTGTTTTCACGGGCTAAAAAGTGTTTA  150

seq1  TATTGATCAAAACATTTTTACTTCTACATAAAGGAAACAAAGTCATCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATCAAAACATTTTTACTTCTACATAAAGGAAACAAAGTCATCATT  200

seq1  ATAGTGAGACAGATGGCTAGTTAGCTCCATGTCTCTGCTTCATATGTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGAGACAGATGGCTAGTTAGCTCCATGTCTCTGCTTCATATGTGTA  250

seq1  GTTCCATGAGGCAGCATAACAACTGAGTTATTTGGTAACTTATTAGAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATGAGGCAGCATAACAACTGAGTTATTTGGTAACTTATTAGAAGC  300

seq1  CCACAATCACAGTCCGTAAGCTAGACTTGCTCAGTCAGTGTTACCAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATCACAGTCCGTAAGCTAGACTTGCTCAGTCAGTGTTACCAGAGA  350

seq1  CATGTTTGAGTCTGTGTCCATGAAAATGTAAGAAGACGGATTTTAGATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTGAGTCTGTGTCCATGAAAATGTAAGAAGACGGATTTTAGATAA  400

seq1  GTGGGCAGTAAAGAAGTTGTTAGAAAACTGTTTTATCTAATCTTAGGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCAGTAAAGAAGTTGTTAGAAAACTGTTTTATCTAATCTTAGGGTA  450

seq1  AATATACAGTCATTGCCAAAAGCCCCAATGGCTGATATGGGTATAATACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACAGTCATTGCCAAAAGCCCCAATGGCTGATATGGGTATAATACT  500

seq1  TAACTAAAGTTTTATCATGTCACTTGCAAAACTATGTCATCAGAAAGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAAGTTTTATCATGTCACTTGCAAAACTATGTCATCAGAAAGCAG  550

seq1  GAGTTTGCCCTTAACTTCAAATACCATTTGGTCTTACCAGTGGCCCTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGCCCTTAACTTCAAATACCATTTGGTCTTACCAGTGGCCCTTCA  600

seq1  TGCTCTCAAGTTGTTTAACCAAATTTCTTCTTGCTGAGATCAGCATATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCAAGTTGTTTAACCAAATTTCTTCTTGCTGAGATCAGCATATAT  650

seq1  TTAAGAAACACTTATTCTGGAAAAATAATACTCCAAAACCTGAATCAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAACACTTATTCTGGAAAAATAATACTCCAAAACCTGAATCAACC  700

seq1  TTTCAATCTACTTGTTAAAAAATAAAGATT-AAGATAATTTTCTAGTGTT  749
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTCAATCTACTTGTTAAAAAATAAAGATTAAAGATAATTTTCTAGTGTT  750

seq1  TGCATGCAGAATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCAGAATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  800