BAC Information

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BAC

Clone NameB6Ng01-018N02
Chromosome12 (Build37)3 (Build37)
Map Location 60,789,650 - 60,790,66725,781,639 - 25,783,003
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639, LOC665644
Downstream geneEG622488, LOC665665, Ppia-ps12_475.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018N02.bB6Ng01-018N02.g
ACCDH852108DH852109
length1,011938
definitionDH852108|Mus musculus domesticus DNA, BAC clone: B6Ng01-018N02, 5' end.DH852109|Mus musculus domesticus DNA, BAC clone: B6Ng01-018N02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(60,789,650 - 60,790,667)(25,781,639 - 25,783,003)
sequence
gaattcaccaaatagactaggaaagcttcaatgctccttaaaccatcctg
tctctgcttctcacatgctggcattatggacgtgcaccaccacatcctaa
aacaggcacttaaaaaaagaaagtcatttctgagtaaatttccaaaaggg
actaagtaagtaatagttcaatttaacaacactggaagaagccgagacag
ccctggactaataatcaaggtctgctgtgctgttggagatcattgacttc
aaagcacgagatcacgtctaggtgatactggactggaggaggaagtagag
tgatttctaatcctgaaaagtaaatgttagatacaatcaccaaaatccac
tatagaagagaacattgaacttctaactcgtcaaggtgagggcatcagat
aatgttagtgtcctattaaagagagtacacagagggctctattcctgctg
ccatgatttactgagacagaatattgctacacagctccagttggactgga
actgtccatgtaactcaggctattccttgaactcatagtaattctcctgc
ctcaacctcccaagcccaaggttatatactggagactttatgctggggca
tctcatttgactcttgagctactgctctaggctttatttcccagccattt
gttcccctctcagacatgaaggcccagtctactgtcctagagcatcaggc
tctgagtttattcctcagtacttggcttaattctataattttagaatttt
tggctttattttcctctaatgtgaggaaattttctattgttcactaatgt
gaggattctagcattttagtcagcctttgtttcttggcacagccagatcc
tttttcttcttgttaactctagtttgatttcctcatgccttcgacccttc
agtccttgcttaggacggatccctgatctcctccaggttacttgtggact
gctccgtgcacttattgctttcatagctttctcagcatcatggtgaaggg
aaagtgacatt
gaattctattgctatcccaattaaagcagcttcattttcatgaaaagatg
ctgaaaaataaaggattcaacatggtaaggaaaaatgtgtcatgtgcctt
atctttttagggcactgcttgtgtatactttgataaatttagaggattgt
gaacttcaggtctgcttctagcaaaatttaggagatgtttgatatagagt
taaagacacaaatggaatcattatctttctagattttattttatttttat
gtattatttgtatgtgagaatctatgtatctgtttgtttgtgtatgtgca
cacacacacacatgtgcctgcatgtcatggcacatgtgtagaggaagaca
aattgcgtgggtcagttctttccttagaccatgggggttcctttgactga
actcaggtcctcagatttcatggcaagtaatcttacataccaagccatcc
tatagaccccaagattataatttcttttttaaaatatatttttattagat
attttcttcatttatatttcaaatgctatcccctttcctagtttcctctc
caaaaatcccctatctcctcccctctccccttgctccccaacccactcac
tcccacttcctggccctggcattcccctatactagagcatagaatcttcc
caaggccaagggcttctcctcccattgatgaccaactaggccatgctctg
ttacatatgcagctagagacacgagtccctccatgtgtttttctttgatt
ggtggtttagtcccagggagctctgggggtactggttagttcatattgtt
gtttcctcctatagggctacagaccccttcagctccttgggtactttctc
tagcttccttcattggggatcctgtgctctgcccaatggatgactatgag
catctacttctgtatttgccagccacttggcagatcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_60789650_60790667
seq2: B6Ng01-018N02.b_44_1054

seq1  GAATTCACCAAATAGACTAGGAAAGCTTCAATGCTCCTTAAACCATCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAAATAGACTAGGAAAGCTTCAATGCTCCTTAAACCATCCTG  50

seq1  TCTCTGCTTCTCACATGCTGGCATTATGGACGTGCACCACCACATCCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTTCTCACATGCTGGCATTATGGACGTGCACCACCACATCCTAA  100

seq1  AACAGGCACTTAAAAAAAGAAAGTCATTTCTGAGTAAATTTCCAAAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCACTTAAAAAAAGAAAGTCATTTCTGAGTAAATTTCCAAAAGGG  150

seq1  ACTAAGTAAGTAATAGTTCAATTTAACAACACTGGAAGAAGCCGAGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTAAGTAATAGTTCAATTTAACAACACTGGAAGAAGCCGAGACAG  200

seq1  CCCTGGACTAATAATCAAGGTCTGCTGTGCTGTTGGAGATCATTGACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGACTAATAATCAAGGTCTGCTGTGCTGTTGGAGATCATTGACTTC  250

seq1  AAAGCACGAGATCACGTCTAGGTGATACTGGACTGGAGGAGGAAGTAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACGAGATCACGTCTAGGTGATACTGGACTGGAGGAGGAAGTAGAG  300

seq1  TGATTTCTAATCCTGAAAAGTAAATGTTAGATACAATCACCAAAATCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCTAATCCTGAAAAGTAAATGTTAGATACAATCACCAAAATCCAC  350

seq1  TATAGAAGAGAACATTGAACTTCTAACTCGTCAAGGTGAGGGCATCAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAGAGAACATTGAACTTCTAACTCGTCAAGGTGAGGGCATCAGAT  400

seq1  AATGTTAGTGTCCTATTAAAGAGAGTACACAGAGGGCTCTATTCCTGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAGTGTCCTATTAAAGAGAGTACACAGAGGGCTCTATTCCTGCTG  450

seq1  CCATGATTTACTGAGACAGAATATTGCTACACAGCTCCAGTTGGACTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATTTACTGAGACAGAATATTGCTACACAGCTCCAGTTGGACTGGA  500

seq1  ACTGTCCATGTAACTCAGGCTATTCCTTGAACTCATAGTAATTCTCCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCATGTAACTCAGGCTATTCCTTGAACTCATAGTAATTCTCCTGC  550

seq1  CTCAACCTCCCAAGCCCAAGGTTATATACTGGAGACTTTATGCTGGGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACCTCCCAAGCCCAAGGTTATATACTGGAGACTTTATGCTGGGGCA  600

seq1  TCTCATTTGACTCTTGAGCTACTGCTCTAGGCTTTATTTCCCAGCCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTGACTCTTGAGCTACTGCTCTAGGCTTTATTTCCCAGCCATTT  650

seq1  GTTCCCCTCTCAGACATGAAGGCCCAGTCTACTGTCCTAGAGCATCAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCCTCTCAGACATGAAGGCCCAGTCTACTGTCCTAGAGCATCAGGC  700

seq1  TCTGAGTTTATTCCTCAGTACTTGGCTTAATTCTATAATTTTAGAA-TTT  749
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCTGAGTTTATTCCTCAGTACTTGGCTTAATTCTATAATTTTAGAATTTT  750

seq1  TGGCTTTATTTTCCTCTAATGTGAGGAAACTTTCTATTGTTCACTAATGT  799
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGGCTTTATTTTCCTCTAATGTGAGGAAATTTTCTATTGTTCACTAATGT  800

seq1  GAGGATTCTAGCATTTTAGTCAGCC-TTGTTTCTTGGCACAGCCAGATCC  848
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAGGATTCTAGCATTTTAGTCAGCCTTTGTTTCTTGGCACAGCCAGATCC  850

seq1  TTTTTCTTCATGGTTAACTCTAGTTTGAATTTCCTCATGCCTTCGACCCT  898
      ||||||||| | ||||||||||||||| ||||||||||||||||||||||
seq2  TTTTTCTTC-TTGTTAACTCTAGTTTG-ATTTCCTCATGCCTTCGACCCT  898

seq1  TCAGTCCTTGCTTAGGACGGAGCCCCTGATTCTCCTCCAGGTTTACTTGT  948
      |||||||||||||||||||||  |||||| ||||||||||| ||||||||
seq2  TCAGTCCTTGCTTAGGACGGA-TCCCTGA-TCTCCTCCAGG-TTACTTGT  945

seq1  GGACTGCTCCGTGCCACTTATTCTGCTTTCATAGCTTTCCTCAGCATCAT  998
      ||||||||||||| |||||||  ||||||||||||||| |||||||||||
seq2  GGACTGCTCCGTG-CACTTAT--TGCTTTCATAGCTTT-CTCAGCATCAT  991

seq1  GGTGAAGGGAAGGTGACATT  1018
      ||||||||||| ||||||||
seq2  GGTGAAGGGAAAGTGACATT  1011

seq1: chr3_25781639_25783003
seq2: B6Ng01-018N02.g_556_870

seq1  TTTTTATTAGATATTTTCTTCATATTGATTTCAAATTTCAAATGCTATCC  50
                                                        
seq2  --------------------------------------------------  0

seq1  CGAAAGGTGATGACAGGAGGCAAAGGCAAGGGAACCAAGCCTCATGCCTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  TCTAACAGGCACTGGGAGTTGACAGCCTCTGAAGGAGGTAGAGATGGTTT  150
                                                        
seq2  --------------------------------------------------  0

seq1  TCTTCAGTGATATGGATAATGATCAGATGCCTGTGCTCTGGCACATGGTG  200
                                                        
seq2  --------------------------------------------------  0

seq1  CTCTATACCCATGAACACAGAAGGAGCACTGACTGGACACAGTACACTAT  250
                                                        
seq2  --------------------------------------------------  0

seq1  AAAGAAGACAGGACATTGGGAAGGATGTGCAGTGTGGCTCAGGGGGAGCT  300
                                                        
seq2  --------------------------------------------------  0

seq1  GGATGAGGACAGCTGGGTGGCTATGCTCTAAATATTCTGTATCCATTCAT  350
                                                        
seq2  --------------------------------------------------  0

seq1  GTACAGAATTACCAAAGAGCAATTAAAATGTTCTAAATGTGTGATGAACT  400
                                                        
seq2  --------------------------------------------------  0

seq1  TGAGCCTTATAACATTCTTCAGCTACATACAAAGAAGTCAGACCTTTCAT  450
                                                        
seq2  --------------------------------------------------  0

seq1  CTATAAAGAAAAATGGAACAAGTGAAATACTTTCCCCCAATCTATTTTTC  500
                                                        
seq2  --------------------------------------------------  0

seq1  CCTCAAAATATCCACACTATTCTACCAGCAAACTTCACAACTAACGACAA  550
                                                        
seq2  --------------------------------------------------  0

seq1  GTCCATGCAAGCATTTTAACTTGCTCAGATTCCCAGGTTACATACAGAAA  600
                                                        
seq2  --------------------------------------------------  0

seq1  TCCTGGTTCAGAGTTGGCCTGGAGTCACAGTGTAAGGAAGTGGAGATGGT  650
                                                        
seq2  --------------------------------------------------  0

seq1  GCAATCCTTGAAGCTTGCCCAGAGTTGGTCCTGTTGAAATGGCAAGCTAC  700
                                                        
seq2  --------------------------------------------------  0

seq1  AGTCTCAAAGACAACCTATCTCCAAAATACATATATAAATAATTATGTAA  750
                                                        
seq2  --------------------------------------------------  0

seq1  ATAAATAGATACATATGGAAAATTATTGGGGAATATAAATGACACCAACC  800
                                                        
seq2  --------------------------------------------------  0

seq1  TCTGACCTTTGTGACCAATGCACCACAGACACACACACACACACAAACAC  850
                                                        
seq2  --------------------------------------------------  0

seq1  CCGCGCGCACACACACACAGGAGGAGTAGATTTCTTCTTCCTTCCTTCCT  900
                                                        
seq2  --------------------------------------------------  0

seq1  TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC  950
                                                        
seq2  --------------------------------------------------  0

seq1  CTTCCTTCCTTCCCTCCCTCCCTCCCTCTTTCTCTCTCTTTCTTTCTTTC  1000
                                                        
seq2  --------------------------------------------------  0

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  1050
                                                        
seq2  --------------------------------------------------  0

seq1  TCTTTCTTCTCCCTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTC  1100
                                     |||  ||   | |  ||||
seq2  ------------------------------TTTTTATTAGATAT--TTTC  18

seq1  CTTTCCTTT-CCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTT  1149
        ||| |||   ||||   | || |||   |||||||  |  |||||| |
seq2  --TTCATTTATATTTCAAATGCTATCC---CCTTTCC--TAGTTTCCTCT  61

seq1  CCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCCTGCTCCCCTACC  1199
      ||     |  ||| ||   ||||  ||| |||   || |||||||| |||
seq2  CCAAAAATCCCCTATC---TCCTCCCCTCTCC---CCTTGCTCCCCAACC  105

seq1  CACACACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGGGGCATATA  1249
      ||| |||||||||||| |||||||||||||||||| |||| | ||||| |
seq2  CACTCACTCCCACTTCCTGGCCCTGGCATTCCCCTATACTAGAGCATAGA  155

seq1  AAGTTTGCAAGACCAGGAGGTCTCTCTTCCCAATGATGGTTGACTGGTCC  1299
      |  ||  |||| ||| | ||  |||| ||||| |||||    ||| | ||
seq2  ATCTTCCCAAGGCCAAG-GGCTTCTCCTCCCATTGATGACCAACTAGGCC  204

seq1  ATCTTTTGCTACATATGCAGCTAGAGACACGAG---CTCCA---------  1337
      ||  | || ||||||||||||||||||||||||   |||||         
seq2  ATGCTCTGTTACATATGCAGCTAGAGACACGAGTCCCTCCATGTGTTTTT  254

seq1  ---------------------------------GGGGTACTGGTTAGTTC  1354
                                       |||||||||||||||||
seq2  CTTTGATTGGTGGTTTAGTCCCAGGGAGCTCTGGGGGTACTGGTTAGTTC  304

seq1  ATATTGTTGTT  1365
      |||||||||||
seq2  ATATTGTTGTT  315