BAC Information

Click to search

BAC

Clone NameB6Ng01-019I16
Chromosome12 (Build37)
Map Location 90,675,650 - 90,807,631
singlet/doubletdoublet
Overlap geneNrxn3
Upstream geneAdck1, LOC100039261, EG666915
Downstream geneLOC100039498
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019I16.bB6Ng01-019I16.g
ACCDH852598DH852599
length6221,048
definitionDH852598|Mus musculus domesticus DNA, BAC clone: B6Ng01-019I16, 5' end.DH852599|Mus musculus domesticus DNA, BAC clone: B6Ng01-019I16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,675,650 - 90,676,271)(90,806,578 - 90,807,631)
sequence
gaattctgattttgtacaacttaaagtttaacagacctgctgggtgtggt
ggcgcatgcctttcatcccagcacttgggaagcagaggaaggcagatttc
tgagttccaggccagcctgggaactacaaagtgagttccaggacagccag
ggctacagagaaaccctgtctggaaaaccaaaaccaaaaccaaaacaaaa
caaaaaagtttaacagaccttcaaaatgtttttttttctatttctagggg
aaaaatgatactttcttctttgaagatgtacagaattgttataaataaat
aaataaataaataaatacatggcttagcattctttgcttgttccctaacc
cacatctgtttgctttcttaggagtttttcataaaatgtataaagtttat
ataaaattattcttagatgcttagcttttgttggaaaaatcaccctaaat
tttcatgaactgaattttaaactattctgtgaaataacttgcgaaataat
tacacagttgggcataagaaagtgccaggtgagatcactgatacaactga
caggacccttcacagtccatttggaaagcgaacctctctctctctctctc
tctctctctctctctctctcgc
gaattcttggctggaaccacactctctctcctctccaagtagactttacg
cagttaacactggcaccaaaggtccttgaccttctcctccgtaacaaata
accaattacctaatatgaggtaatgtgggctctgattaaggctaatgaag
acatggtggctgaagccctgtttgcaacatgcagcactattagggaagat
taatcaccttttaaccagcacttctgtattctggctccaagcagccggag
agaggagaggaacatccatcacttcatccaagcaataccaaatgctgctt
cggctatccatcagggaagcactgaccaactacagcgtgggaatgtggcc
aacaaaactacaagggagttaggctaaataaggggaggcacatgcagtca
gggtatggaacagaatgcaggattgggatattatggaacgaagcatcact
gctgcaatcaagtgttgtttcccaaaccatggcactaggcatcttgcttc
tgctctactagtggtggactattcctgccatcattcctaattgggtatgt
gttcttagaagaaaggcacagtgtttattgcagttgctgctttgcaaatg
taacatgcttagagcatgtattatgaataagggatgcaccaggaagcatt
ttacattcctattctcacacaaggtgttgcatcggctcatgctcttcagc
tggactcttttcctgtcaaaagcttgcagtaaacatgaaatggaagtgca
aattgattgtccttctttctaaatccctaagataatgactcttacccaaa
cacatgggacttgacatatgcaagaatgccaccattattgagttcaagtt
ttccattttaaacgtctcctaattataaacatcaacaaacatacatagca
cagattttattatattgtagtctatgtcttcaacacctgttgcccaacat
aaaagaaccagaacagctgtagaacaaaggaccctctatggaatagtggt
attcttacgttcttccgcccctggattcaaatcaaactctctgtaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_90675650_90676271
seq2: B6Ng01-019I16.b_42_663

seq1  GAATTCTGATTTTGTACAACTTAAAGTTTAACAGACCTGCTGGGTGTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATTTTGTACAACTTAAAGTTTAACAGACCTGCTGGGTGTGGT  50

seq1  GGCGCATGCCTTTCATCCCAGCACTTGGGAAGCAGAGGAAGGCAGATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCATGCCTTTCATCCCAGCACTTGGGAAGCAGAGGAAGGCAGATTTC  100

seq1  TGAGTTCCAGGCCAGCCTGGGAACTACAAAGTGAGTTCCAGGACAGCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCCAGGCCAGCCTGGGAACTACAAAGTGAGTTCCAGGACAGCCAG  150

seq1  GGCTACAGAGAAACCCTGTCTGGAAAACCAAAACCAAAACCAAAACAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACAGAGAAACCCTGTCTGGAAAACCAAAACCAAAACCAAAACAAAA  200

seq1  CAAAAAAGTTTAACAGACCTTCAAAATGTTTTTTTTTCTATTTCTAGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAGTTTAACAGACCTTCAAAATGTTTTTTTTTCTATTTCTAGGGG  250

seq1  AAAAATGATACTTTCTTCTTTGAAGATGTACAGAATTGTTATAAATAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGATACTTTCTTCTTTGAAGATGTACAGAATTGTTATAAATAAAT  300

seq1  AAATAAATAAATAAATACATGGCTTAGCATTCTTTGCTTGTTCCCTAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAATAAATACATGGCTTAGCATTCTTTGCTTGTTCCCTAACC  350

seq1  CACATCTGTTTGCTTTCTTAGGAGTTTTTCATAAAATGTATAAAGTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTGTTTGCTTTCTTAGGAGTTTTTCATAAAATGTATAAAGTTTAT  400

seq1  ATAAAATTATTCTTAGATGCTTAGCTTTTGTTGGAAAAATCACCCTAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTATTCTTAGATGCTTAGCTTTTGTTGGAAAAATCACCCTAAAT  450

seq1  TTTCATGAACTGAATTTTAAACTATTCTGTGAAATAACTTGCGAAATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGAACTGAATTTTAAACTATTCTGTGAAATAACTTGCGAAATAAT  500

seq1  TACACAGTTGGGCATAAGAAAGTGCCAGGTGAGATCACTGATACAACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGTTGGGCATAAGAAAGTGCCAGGTGAGATCACTGATACAACTGA  550

seq1  CAGGACCCTTCACAGTCCATTTGGAAAGCGAACCTCTCTCTCTCTCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCCTTCACAGTCCATTTGGAAAGCGAACCTCTCTCTCTCTCTCTC  600

seq1  TCTCTCTCTCTCTCTCTCTCTC  622
      |||||||||||||||||||| |
seq2  TCTCTCTCTCTCTCTCTCTCGC  622

seq1: chr12_90806578_90807631
seq2: B6Ng01-019I16.g_69_1116 (reverse)

seq1  CTTTACAGAGATGTTTGATTTTAAATTCAGGGGCGATAGAACTGTAAGAA  50
      ||||||||||| |||||| ||| ||| ||||||||  ||||| |||||||
seq2  CTTTACAGAGA-GTTTGA-TTTGAATCCAGGGGCGGAAGAAC-GTAAGAA  47

seq1  TACACCTATCCCAATAGAGGTTCCTTTG-TCTACAGCTGTTCTTGGTTCC  99
      |||  |||| || ||||||| ||||||| ||||||||||||| ||||| |
seq2  TACCACTATTCC-ATAGAGGGTCCTTTGTTCTACAGCTGTTC-TGGTT-C  94

seq1  TTTTATGTTTGGGCAACAGGTGTTGAAGACATAGAACTACAATTATATAA  149
      ||||||| |||||||||||||||||||||||||| ||||||||   ||||
seq2  TTTTATG-TTGGGCAACAGGTGTTGAAGACATAG-ACTACAATATAATAA  142

seq1  AATCTGTGCTATGTATGTTTGTTGATGTTTATAATTTGGAGACGTTTTAA  199
      |||||||||||||||||||||||||||||||||||| |||||||||| ||
seq2  AATCTGTGCTATGTATGTTTGTTGATGTTTATAATTAGGAGACGTTTAAA  192

seq1  ATGGAAAACTTGAACTCAATAATGGTGGCATTCTTGCATATGTCAAGTCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAACTTGAACTCAATAATGGTGGCATTCTTGCATATGTCAAGTCC  242

seq1  CATGTGTTTTGGGTAAGAGTCATTATCTTAGGGATTTAGAAAGAAGGACA  299
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTG-TTTGGGTAAGAGTCATTATCTTAGGGATTTAGAAAGAAGGACA  291

seq1  ATCAATTTGCACTTCCATTTCATGTTTACTGCAAGCTTTTGACAGG-AAA  348
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATCAATTTGCACTTCCATTTCATGTTTACTGCAAGCTTTTGACAGGAAAA  341

seq1  GAGTCCAGCTGAAGAGCATGAGCCGATGCAACACCTTGTGTGAGAATAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCAGCTGAAGAGCATGAGCCGATGCAACACCTTGTGTGAGAATAGG  391

seq1  AATGT-AAATGCTTCCTGGTGCATCCCTTATTCATAATACATGCTCTAAG  447
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAAATGCTTCCTGGTGCATCCCTTATTCATAATACATGCTCTAAG  441

seq1  CATGTTACATTTGCAAAGCAGCAACTGCAATAAACACTGTGCCTTTCTTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTACATTTGCAAAGCAGCAACTGCAATAAACACTGTGCCTTTCTTC  491

seq1  TAAGAACACATACCCAATTAGGAATGATGGCAGGAATAGTCCACCACTAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACACATACCCAATTAGGAATGATGGCAGGAATAGTCCACCACTAG  541

seq1  TAGAGCAGAAGCAAGATGCCTAGTGCCATGGTTTGGGAAACAACACTTGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCAGAAGCAAGATGCCTAGTGCCATGGTTTGGGAAACAACACTTGA  591

seq1  TTGCAGCAGTGATGCTTCGTTCCATAATATCCCAATCCTGCATTCTGTTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCAGTGATGCTTCGTTCCATAATATCCCAATCCTGCATTCTGTTC  641

seq1  CATACCCTGACTGCATGTGCCTCCCCTTATTTAGCCTAACTCCCTTGTAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCCTGACTGCATGTGCCTCCCCTTATTTAGCCTAACTCCCTTGTAG  691

seq1  TTTTGTTGGCCACATTCCCACGCTGTAGTTGGTCAGTGCTTCCCTGATGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGGCCACATTCCCACGCTGTAGTTGGTCAGTGCTTCCCTGATGG  741

seq1  ATAGCCGAAGCAGCATTTGGTATTGCTTGGATGAAGTGATGGATGTTCCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCGAAGCAGCATTTGGTATTGCTTGGATGAAGTGATGGATGTTCCT  791

seq1  CTCCTCTCTCCGGCTGCTTGGAGCCAGAATACAGAAGTGCTGGTTAAAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTCTCCGGCTGCTTGGAGCCAGAATACAGAAGTGCTGGTTAAAAG  841

seq1  GTGATTAATCTTCCCTAATAGTGCTGCATGTTGCAAACAGGGCTTCAGCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTAATCTTCCCTAATAGTGCTGCATGTTGCAAACAGGGCTTCAGCC  891

seq1  ACCATGTCTTCATTAGCCTTAATCAGAGCCCACATTACCTCATATTAGGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTCTTCATTAGCCTTAATCAGAGCCCACATTACCTCATATTAGGT  941

seq1  AATTGGTTATTTGTTACGGAGGAGAAGGTCAAGGACCTTTGGTGCCAGTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTTATTTGTTACGGAGGAGAAGGTCAAGGACCTTTGGTGCCAGTG  991

seq1  TTAACTGCGTAAAGTCTACTTGGAGAGGAGAGAGAGTGTGGTTCCAGCCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGCGTAAAGTCTACTTGGAGAGGAGAGAGAGTGTGGTTCCAGCCA  1041

seq1  AGAATTC  1054
      |||||||
seq2  AGAATTC  1048