BAC Information

Click to search

BAC

Clone NameB6Ng01-019K24
Chromosome12 (Build37)
Map Location 21,990,599 - 22,114,544
singlet/doubletdoublet
Overlap geneEG668645
Upstream geneLOC668698, LOC546752, EG629257, Ddef2, Itgb1bp1, Cpsf3, Iah1, Adam17, Ywhaq, LOC100043407, LOC100042796, 6030426L16Rik, LOC434693
Downstream geneEG668646, LOC100043416, LOC668650, EG668496, LOC668653, EG432637, LOC668656, EG629133, EG668660, EG668662, LOC668664, 2410018L13Rik, LOC77114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019K24.bB6Ng01-019K24.g
ACCDH852706DH852707
length970734
definitionDH852706|Mus musculus domesticus DNA, BAC clone: B6Ng01-019K24, 5' end.DH852707|Mus musculus domesticus DNA, BAC clone: B6Ng01-019K24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,113,565 - 22,114,544)(21,990,599 - 21,991,331)
sequence
gaattcacacatgctccaggcacaagcttaggtcattcacagataggctg
acaggtctggatcacgaggaactgtccagcctggcaggcagcccacacat
gcagcctcactgtgcatgctcaggcaaggcagtaaacaagtggctttcac
ggtgcctggaccgaacccgcttcccgcagctcatgacaaacattgaggat
aatgggcaggtagctttgtcacatgactcttgagcatcaggtatggaggc
atttcttacctgtgggctgaattggggcacagtgcctaggcagagcttga
gaactgaaggatgaggtcaagcccagctttgctctgcgacaatgagtgtg
ccactttgcctttctgaactgcagagggcatattagtgcctgcccccatt
ttgtctacctacaggtaaaccagataaaatcttgtcactccttgcatacc
acttgcatatctgttaccagggtagcaataaaaaggtacaaaatgtgtaa
gtacatttttacaaaaacctgaaaatataagtaatagcaatttgtggact
ggaatgtggggaccattctgttttctgggatgactacaaagacagatgga
gtttggggtctaagtgatggaaataatcttgcaggtctaagttagacccc
ggcctgaggataggatgagagtttggacatgctttccctcctgcgtgcag
ctgctgtcccaaggcaaagctgtcactcagaagcctggcatgtaaaactt
catctgttccatgaaaagtcaattctcttcccagacattgccatccctgg
tgataagatgggagcttttagcatgcccttggcaaagacttgcatgtttt
attcttgtctttctggctgactgtcctgacccagaatactcttgggacca
cgtctgggattctgcgactctgtggaacttccaaactcactaagacccca
aagtctatcttggggctgtg
gaattcagtctctttccattaggagagccctgctttctcatgggctgctc
caggcttgcattgaaggctaagaccagggctctcaagcttcactcccaaa
gaaagtgcctcaggagaggtgtaggaatcgagttgccacactccagtact
gtgattctggggcctggggcgaggcccaaggagctgcattccaggagacc
caacctcaggcacattgctgcctctctggctaatgaagactgacaagtct
acaggccaggggatggcttgaagagcaccgagaaccctctctagatctga
gcatactcttcagactggctggtcccatgaaggacaagtgttttgttttg
ctttgttttttcttttttgctccttcctctgacttcacagccaatgagct
cttttttccaaggaagcagcatcctaatttggctaatggaagtagtaagg
gagtttatttgtgagatctgggtgactcccagatctccagaggggcccag
actaggtcaggcactatgcagccagaaccacgtgtcaactatgtacagtg
gtgtttgtcctctcaggatcctgctgccagctgtggcttctgaatattct
ctgatggtagaggggggtagttagatctttctgctgatgtctgccacccc
agggaggatttttgcctccttttctcatcaaaatctcattcaaggaccag
tggtcaggacctaggcacggtacaaagtggttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_22113565_22114544
seq2: B6Ng01-019K24.b_46_1015 (reverse)

seq1  CACAGCCCACAGGATAGACTTTGGGGGTCTAAGTGAGTTTGGGAAGTTTC  50
      |||||||| || |||||||||| ||||||| ||||||||| ||||| |||
seq2  CACAGCCC-CAAGATAGACTTT-GGGGTCTTAGTGAGTTT-GGAAG-TTC  46

seq1  CACAGAGTCGGCAG-ATCCCAGACGTGGGTCCCAAGAGGTATCTGGGTCA  99
      ||||||||| |||| ||||||||||| |||||||||||   |||||||||
seq2  CACAGAGTC-GCAGAATCCCAGACGT-GGTCCCAAGAGTATTCTGGGTCA  94

seq1  GGGACAGTCCAGCCAGAAAGACAGAATTAAAACATGGCAAGGTCTTTGCC  149
       ||||||| ||||||||||||||  | |||||||| |||| |||||||||
seq2  -GGACAGT-CAGCCAGAAAGACAAGAATAAAACAT-GCAA-GTCTTTGCC  140

seq1  AAGGGCATGCTAATAGCTCCCATC-TATCACCCAGGGATGGCAATGTCTG  198
      ||||||||||||| |||||||||| ||||| |||||||||||||||||||
seq2  AAGGGCATGCTAAAAGCTCCCATCTTATCA-CCAGGGATGGCAATGTCTG  189

seq1  GGAAGAGAATTGACTTTTCATGGAACAGATGAAGTTTTACATGCCAGGCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGAATTGACTTTTCATGGAACAGATGAAGTTTTACATGCCAGGCT  239

seq1  TCCTGAGTGACAGCTTTGCCTTGGGACAGCAGCTGCACGCAGGAGGGAAA  298
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-CTGAGTGACAGCTTTGCCTTGGGACAGCAGCTGCACGCAGGAGGGAAA  288

seq1  GCATGTCCAAACTCTCATCCTATCCTCAGGCCGGGGTCTAACTTAGACCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTCCAAACTCTCATCCTATCCTCAGGCCGGGGTCTAACTTAGACCT  338

seq1  GCAAGATTATTTCCATCACTTAGACCCCAAACTCCATCTGTCTTTGTAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGATTATTTCCATCACTTAGACCCCAAACTCCATCTGTCTTTGTAGT  388

seq1  CATCCCAGAAAACAGAATGGTCCCCACATTCCAGTCCACAAATTGCTATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCAGAAAACAGAATGGTCCCCACATTCCAGTCCACAAATTGCTATT  438

seq1  ACTTATATTTTCAGGTTTTTGTAAAAATGTACTTACACATTTTGTACCTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATATTTTCAGGTTTTTGTAAAAATGTACTTACACATTTTGTACCTT  488

seq1  TTTATTGCTACCCTGGTAACAGATATGCAAGTGGTATGCAAGGAGTGACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGCTACCCTGGTAACAGATATGCAAGTGGTATGCAAGGAGTGACA  538

seq1  AGATTTTATCTGGTTTACCTGTAGGTAGACAAAATGGGGGCAGGCACTAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTATCTGGTTTACCTGTAGGTAGACAAAATGGGGGCAGGCACTAA  588

seq1  TATGCCCTCTGCAGTTCAGAAAGGCAAAGTGGCACACTCATTGTCGCAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCTCTGCAGTTCAGAAAGGCAAAGTGGCACACTCATTGTCGCAGA  638

seq1  GCAAAGCTGGGCTTGACCTCATCCTTCAGTTCTCAAGCTCTGCCTAGGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCTGGGCTTGACCTCATCCTTCAGTTCTCAAGCTCTGCCTAGGCA  688

seq1  CTGTGCCCCAATTCAGCCCACAGGTAAGAAATGCCTCCATACCTGATGCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCCCAATTCAGCCCACAGGTAAGAAATGCCTCCATACCTGATGCT  738

seq1  CAAGAGTCATGTGACAAAGCTACCTGCCCATTATCCTCAATGTTTGTCAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTCATGTGACAAAGCTACCTGCCCATTATCCTCAATGTTTGTCAT  788

seq1  GAGCTGCGGGAAGCGGGTTCGGTCCAGGCACCGTGAAAGCCACTTGTTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCGGGAAGCGGGTTCGGTCCAGGCACCGTGAAAGCCACTTGTTTA  838

seq1  CTGCCTTGCCTGAGCATGCACAGTGAGGCTGCATGTGTGGGCTGCCTGCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTGCCTGAGCATGCACAGTGAGGCTGCATGTGTGGGCTGCCTGCC  888

seq1  AGGCTGGACAGTTCCTCGTGATCCAGACCTGTCAGCCTATCTGTGAATGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGACAGTTCCTCGTGATCCAGACCTGTCAGCCTATCTGTGAATGA  938

seq1  CCTAAGCTTGTGCCTGGAGCATGTGTGAATTC  980
      ||||||||||||||||||||||||||||||||
seq2  CCTAAGCTTGTGCCTGGAGCATGTGTGAATTC  970

seq1: chr12_21990599_21991331
seq2: B6Ng01-019K24.g_67_800

seq1  GAATTCAGTCTCTTTCCATTAGGAGAGCCCTGCTTTCTCATGGGCTGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTCTTTCCATTAGGAGAGCCCTGCTTTCTCATGGGCTGCTC  50

seq1  CAGGCTTGCATTGAAGGCTAAGACCAGGGCTCTCAAGCTTCACTCCCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTGCATTGAAGGCTAAGACCAGGGCTCTCAAGCTTCACTCCCAAA  100

seq1  GAAAGTGCCTCAGGAGAGGTGTAGGAATCGAGTTGCCACACTCCAGTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGCCTCAGGAGAGGTGTAGGAATCGAGTTGCCACACTCCAGTACT  150

seq1  GTGATTCTGGGGCCTGGGGCGAGGCCCAAGGAGCTGCATTCCAGGAGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCTGGGGCCTGGGGCGAGGCCCAAGGAGCTGCATTCCAGGAGACC  200

seq1  CAACCTCAGGCACATTGCTGCCTCTCTGGCTAATGAAGACTGACAAGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTCAGGCACATTGCTGCCTCTCTGGCTAATGAAGACTGACAAGTCT  250

seq1  ACAGGCCAGGGGATGGCTTGAAGAGCACCGAGAACCCTCTCTAGATCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCAGGGGATGGCTTGAAGAGCACCGAGAACCCTCTCTAGATCTGA  300

seq1  GCATACTCTTCAGACTGGCTGGTCCCATGAAGGACAAGTGTTTTGTTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACTCTTCAGACTGGCTGGTCCCATGAAGGACAAGTGTTTTGTTTTG  350

seq1  CTTTGTTTTTTCTTTTTTGCTCCTTCCTCTGACTTCACAGCCAATGAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTTTTCTTTTTTGCTCCTTCCTCTGACTTCACAGCCAATGAGCT  400

seq1  CTTTTTTCCAAGGAAGCAGCATCCTAATTTGGCTAATGGAAGTAGTAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCCAAGGAAGCAGCATCCTAATTTGGCTAATGGAAGTAGTAAGG  450

seq1  GAGTTTATTTGTGAGATCTGGGTGACTCCCAGATCTCCAGAGGGGCCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTATTTGTGAGATCTGGGTGACTCCCAGATCTCCAGAGGGGCCCAG  500

seq1  ACTAGGTCAGGCACTATGCAGCCAGAACCACGTGTCAACTATGTACAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGTCAGGCACTATGCAGCCAGAACCACGTGTCAACTATGTACAGTG  550

seq1  GTGTTTGTCCTCTCAGGATCCTGCTGCCAGCTGTGGCTTCTGAATATTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTCCTCTCAGGATCCTGCTGCCAGCTGTGGCTTCTGAATATTCT  600

seq1  CTGATGGTAGAGGGGGGTAGTTAGATCTTTCTGCTGATGTCTGCCACCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGTAGAGGGGGGTAGTTAGATCTTTCTGCTGATGTCTGCCACCCC  650

seq1  AGGGAGGATTCTTGCCTCCTTTTCACAACAAAATCTCAGTTCAGGACCAG  700
      |||||||||| ||||||||||||| || |||||||||| |  ||||||||
seq2  AGGGAGGATTTTTGCCTCCTTTTCTCATCAAAATCTCATTCAAGGACCAG  700

seq1  -GGCCAGGACCTAGGCACTGTACAAAGTGGTTGG  733
       || |||||||||||||| |||||||||||||||
seq2  TGGTCAGGACCTAGGCACGGTACAAAGTGGTTGG  734