BAC Information

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BAC

Clone NameB6Ng01-020M22
Chromosome12 (Build37)
Map Location 71,753,189 - 71,893,384
singlet/doubletdoublet
Overlap geneLOC100041061
Upstream geneSos2, LOC100040879, L2hgdh, Atp5s, Cdkl1, Map4k5, Spg3a, EG622339, Sav1, LOC100040999, Nin, ENSMUSG00000056391, Gm804, Pygl, Trim9, Txndc1, LOC100040965
Downstream geneFrmd6, Actr10, Psma3, 3110056K07Rik, Arid4a, Timm9, LOC100041035, 2700049A03Rik, LOC666162, Dact1, LOC100041190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020M22.bB6Ng01-020M22.g
ACCDH853498DH853499
length1,0781,211
definitionDH853498|Mus musculus domesticus DNA, BAC clone: B6Ng01-020M22, 5' end.DH853499|Mus musculus domesticus DNA, BAC clone: B6Ng01-020M22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,753,189 - 71,754,268)(71,892,133 - 71,893,384)
sequence
gaattccaggttactggtagggttagcatgcagagaggctctgcaaattc
attttcagatttacaagagagagggggaaagacagagagagacagagaca
gacagagagaggcggagaaacagagacagagacaggtagagacagagatg
gagacagagacaaggagacagagagagaaagatggagacagagactgaga
gacaggcagatggcagaaagagggagggaggtagaaaaaatgtctctaat
gatcactctgatctacataaaatacaaaataagtatctcaaatgtttcta
aactgtacattaagtgctaatgtgtaccatgggaaatggggtttatttag
atctggaaagctaaaatcacacacaaagaaattgataaataaggataaag
aacttgtagttcaagttttccataatgagctgatgttattttataattgg
gaaaaaaatacaaaatgttaccatttaccaagaaatactcttttctctaa
gtggctttaagtttgaaacccagtttatttctaaactgagattactacca
gatcagatggaaaggtctaccatcaattaaaagtgaagggatcccaataa
gctggggccagaagaaactacatagaggggctggatcgacagagcagtag
ttaggagcactcagggctgccttcagttccaaacacacactgggtgctca
ctgctgcctctcactgcagttccgggagatacagcgccctcttctggcct
tggagggcatctgcatgcacacagtgcacatacctacactcagcagggta
tgcacacacaaacacacacacacacacacacacacacacacacacacaca
cacacacacacacaaaacaaataatgaaaaaatttcagaaagaaaaccaa
agaaacaaggtctataaatgcttttcttttcctcatctgatcttttttga
tcagttagaaaattcttagcatgggtgaaagggaacattagtcagtaaac
agtcaaataagatggaatctgtcttcctcacctgatagtatcagtttacc
actgccagttccttatgagttttcttgg
gaattcagagacattccatgatgtccacacattttcctaaatctgtgtag
ttttcagggcaggagagtagtggccagtggctgcgtcacatggtgcagca
tcactgttccatgtcgatgctgaacactttggaggctgtcgccccaattg
agggcagatgcaagagcaaaattccctctcgattgtgaagacttacagtg
acaagatggtggactagctccgtaatcattccactgatgaaagacaaaat
tataatttgtatatttttaggactggaattattgttaagatggattttgc
ctcttccctttttactttgaaaatatatatcaatttagaaaaaactaaag
atgcctatgtagctcacatatttctatgggagggtactggtctactgctg
tcattagacttgcacacggtactttttcttaaagaaaagaggatcttgtg
aagatttacaggctcacagctcagcctgtagatgatgccttagtcactga
gacttggtgggtctcttatgcagcctagtatcagggcactgtgacaatag
gctgtgctgacattgctggtacctaagaggaagagggtgacccatccatc
agtcaactgaccacctgcacacaggttctgtgctagctcattttgtacat
ttaggagtattaagtatccatggatctgctgggtccacctttctggtttc
tccacctgaggattgaataattcagcagctctcgccctaaacctgctcct
cttgcattttctatctgggtcacagccctctatggcttcctcctctctga
attgcatgcccacacccaacatgcaaacactcattaagatctatccatcc
ctcgatacacccttcgggcttcattgtcaccactgtttggaatgttcctt
taatctcccaactcttctctcttccttcacatctctccctcactgctatt
aagtttaacctaaaaaaatcacaatttagttatattctctgattcaagca
ttaagtcacagccaaaatgtttcatagtagccagagggtctctcaaagct
gcctctgtctgggttggtggtcacttgtctcccgaatgaaaagctccatc
cacgctatagctttgaacctgcacatgtgctggaaggctttcctccctct
cagtcacttcctgtgcaatccacactgtgagttccataagtacaacttgc
tgattgaactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_71753189_71754268
seq2: B6Ng01-020M22.b_45_1122

seq1  GAATTCCAGGTTACTGGTAGGGTTAGCATGCAGAGAGGCTCTGCAAATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTTACTGGTAGGGTTAGCATGCAGAGAGGCTCTGCAAATTC  50

seq1  ATTTTCAGATTTACAAGAGAGAGGGGGAAAGACAGAGAGAGACAGAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAGATTTACAAGAGAGAGGGGGAAAGACAGAGAGAGACAGAGACA  100

seq1  GACAGAGAGAGGCGGAGAAACAGAGACAGAGACAGGTAGAGACAGAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGAGAGGCGGAGAAACAGAGACAGAGACAGGTAGAGACAGAGATG  150

seq1  GAGACAGAGACAAGGAGACAGAGAGAGAAAGATGGAGACAGAGACTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGAGACAAGGAGACAGAGAGAGAAAGATGGAGACAGAGACTGAGA  200

seq1  GACAGGCAGATGGCAGAAAGAGGGAGGGAGGTAGAAAAAATGTCTCTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGCAGATGGCAGAAAGAGGGAGGGAGGTAGAAAAAATGTCTCTAAT  250

seq1  GATCACTCTGATCTACATAAAATACAAAATAAGTATCTCAAATGTTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACTCTGATCTACATAAAATACAAAATAAGTATCTCAAATGTTTCTA  300

seq1  AACTGTACATTAAGTGCTAATGTGTACCATGGGAAATGGGGTTTATTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTACATTAAGTGCTAATGTGTACCATGGGAAATGGGGTTTATTTAG  350

seq1  ATCTGGAAAGCTAAAATCACACACAAAGAAATTGATAAATAAGGATAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGAAAGCTAAAATCACACACAAAGAAATTGATAAATAAGGATAAAG  400

seq1  AACTTGTAGTTCAAGTTTTCCATAATGAGCTGATGTTATTTTATAATTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTAGTTCAAGTTTTCCATAATGAGCTGATGTTATTTTATAATTGG  450

seq1  GAAAAAAATACAAAATGTTACCATTTACCAAGAAATACTCTTTTCTCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAATACAAAATGTTACCATTTACCAAGAAATACTCTTTTCTCTAA  500

seq1  GTGGCTTTAAGTTTGAAACCCAGTTTATTTCTAAACTGAGATTACTACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTTAAGTTTGAAACCCAGTTTATTTCTAAACTGAGATTACTACCA  550

seq1  GATCAGATGGAAAGGTCTACCATCAATTAAAAGTGAAGGGATCCCAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGATGGAAAGGTCTACCATCAATTAAAAGTGAAGGGATCCCAATAA  600

seq1  GCTGGGGCCAGAAGAAACTACATAGAGGGGCTGGATCGACAGAGCAGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGCCAGAAGAAACTACATAGAGGGGCTGGATCGACAGAGCAGTAG  650

seq1  TTAGGAGCACTCAGGGCTGCCTTCAGTTCCAAACACACACTGGGTGCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGCACTCAGGGCTGCCTTCAGTTCCAAACACACACTGGGTGCTCA  700

seq1  CTGCTGCCTCTCACTGCAGTTCCGGGAGATACAGCGCCCTCTTCTGGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCCTCTCACTGCAGTTCCGGGAGATACAGCGCCCTCTTCTGGCCT  750

seq1  TGGAGGGCATCTGCATGCACACAGTGCACATACCTACACTCAGCAGGGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGCATCTGCATGCACACAGTGCACATACCTACACTCAGCAGGGTA  800

seq1  TGCACACACAAACACACACACACACACACACACACACACACACACACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACACAAACACACACACACACACACACACACACACACACACACACA  850

seq1  CACACACACACACAAAACAAATAATGAAAAAAATTTCAGAAAGAAAACCA  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CACACACACACACAAAACAAATAATG-AAAAAATTTCAGAAAGAAAACCA  899

seq1  AAGAAACAAGGTCTATAAATGCTTTTCTTTTTCCTCATCTGATCTTTTTT  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAGAAACAAGGTCTATAAATGCTTTTC-TTTTCCTCATCTGATCTTTTTT  948

seq1  GATCAGTTAGAAAAATTCTTAGCATGGGTGAAAGGGAACATTAGTCAGTA  1000
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTTAG-AAAATTCTTAGCATGGGTGAAAGGGAACATTAGTCAGTA  997

seq1  GACAGTCAAAGTAGGATGGAATCTGTCTT-CTCAGCTGAT-GTATCAGTT  1048
       ||||||||| || ||||||||||||||| |||| ||||| |||||||||
seq2  AACAGTCAAA-TAAGATGGAATCTGTCTTCCTCACCTGATAGTATCAGTT  1046

seq1  TACAACTGCCAGTTCCTTATGAGTTTTCTTGG  1080
      ||| ||||||||||||||||||||||||||||
seq2  TACCACTGCCAGTTCCTTATGAGTTTTCTTGG  1078

seq1: chr12_71892133_71893384
seq2: B6Ng01-020M22.g_70_1280 (reverse)

seq1  AAGTTCAATACACTGACAGATGT-GTCATGGTGGGGAACATTCCAACCCA  49
      |||||||||   | |  || |||  | ||     |||||       | ||
seq2  AAGTTCAAT---CAGCAAGTTGTACTTAT-----GGAAC------TCACA  36

seq1  GTTGTGGTGGAAATGGACAGAGAGTGAGCTTGAAGAAGGGAGGGAAAGGC  99
      ||    |||| | || ||||  |||||   |||   |||||||  || ||
seq2  GT----GTGG-ATTGCACAGGAAGTGA--CTGA--GAGGGAGG--AAAGC  75

seq1  ACTCCAGCAGCAAGTGTGCAGGGTTCATAGGCTTATAGGCGT-GATGGAA  148
        ||||||| ||  |||||| |||||| ||   |||| |||| |||||| 
seq2  CTTCCAGCA-CA--TGTGCA-GGTTCAAAG--CTATA-GCGTGGATGGA-  117

seq1  GACTCTACATGTCGGGAGACAAGTAGACACACAACCAGGACAGAGGCAGC  198
        || | ||| ||||||||||||| |||   |||||  ||||||||||||
seq2  -GCTTTTCAT-TCGGGAGACAAGT-GACCACCAACCCAGACAGAGGCAGC  164

seq1  TTATGAAGAGACACTCTGGCTACTATGAAACATTTTGGCTTGTGACTTAT  248
      || || |||||| |||||||||||||||||||||||||| ||||||||| 
seq2  TT-TG-AGAGACCCTCTGGCTACTATGAAACATTTTGGC-TGTGACTTAA  211

seq1  TGCTTGAATCAGGGAATAATATACTAAATTTGTGATTGTTTTAGGTTAAA  298
      |||||||||||| |||| ||| |||||| |||||||| ||||||||||||
seq2  TGCTTGAATCAGAGAAT-ATA-ACTAAA-TTGTGATTTTTTTAGGTTAAA  258

seq1  CTTAATAGCAGTGAGGGAGAGGATGTGAAGGAAGAGAGAAGAGTTGGGAG  348
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTTAATAGCAGTGAGGGAGA-GATGTGAAGGAAGAGAGAAGAGTTGGGAG  307

seq1  ATTAAAGGAACATTCCAAACAGTGGTGACAATGAAGCCCGAAGGGTGTAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGAACATTCCAAACAGTGGTGACAATGAAGCCCGAAGGGTGTAT  357

seq1  CGAGGGATGGATAGATCTTAATGAGTGTTTGCATGTTGGGTGTGGGCATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGGATGGATAGATCTTAATGAGTGTTTGCATGTTGGGTGTGGGCATG  407

seq1  CAATTCAGAGAGGAGGAAGCCATAGAGGGCTGTGACCCAGATAGAAAATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAGAGAGGAGGAAGCCATAGAGGGCTGTGACCCAGATAGAAAATG  457

seq1  CAAGAGGAGCAGGTTTAGGGCGAGAGCTGCTGAATTATTCAATCCTCAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGGAGCAGGTTTAGGGCGAGAGCTGCTGAATTATTCAATCCTCAGG  507

seq1  TGGAGAAACCAGAAAGGTGGACCCAGCAGATCCATGGATACTTAATACTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAACCAGAAAGGTGGACCCAGCAGATCCATGGATACTTAATACTC  557

seq1  CTAAATGTACAAAATGAGCTAGCACAGAACCTGTGTGCAGGTGGTCAGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGTACAAAATGAGCTAGCACAGAACCTGTGTGCAGGTGGTCAGTT  607

seq1  GACTGATGGATGGGTCACCCTCTTCCTCTTAGGTACCAGCAATGTCAGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATGGATGGGTCACCCTCTTCCTCTTAGGTACCAGCAATGTCAGCA  657

seq1  CAGCCTATTGTCACAGTGCCCTGATACTAGGCTGCATAAGAGACCCACCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTATTGTCACAGTGCCCTGATACTAGGCTGCATAAGAGACCCACCA  707

seq1  AGTCTCAGTGACTAAGGCATCATCTACAGGCTGAGCTGTGAGCCTGTAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCAGTGACTAAGGCATCATCTACAGGCTGAGCTGTGAGCCTGTAAA  757

seq1  TCTTCACAAGATCCTCTTTTCTTTAAGAAAAAGTACCGTGTGCAAGTCTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACAAGATCCTCTTTTCTTTAAGAAAAAGTACCGTGTGCAAGTCTA  807

seq1  ATGACAGCAGTAGACCAGTACCCTCCCATAGAAATATGTGAGCTACATAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGCAGTAGACCAGTACCCTCCCATAGAAATATGTGAGCTACATAG  857

seq1  GCATCTTTAGTTTTTTCTAAATTGATATATATTTTCAAAGTAAAAAGGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTTAGTTTTTTCTAAATTGATATATATTTTCAAAGTAAAAAGGGA  907

seq1  AGAGGCAAAATCCATCTTAACAATAATTCCAGTCCTAAAAATATACAAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAAAATCCATCTTAACAATAATTCCAGTCCTAAAAATATACAAAT  957

seq1  TATAATTTTGTCTTTCATCAGTGGAATGATTACGGAGCTAGTCCACCATC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTTGTCTTTCATCAGTGGAATGATTACGGAGCTAGTCCACCATC  1007

seq1  TTGTCACTGTAAGTCTTCACAATCGAGAGGGAATTTTGCTCTTGCATCTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACTGTAAGTCTTCACAATCGAGAGGGAATTTTGCTCTTGCATCTG  1057

seq1  CCCTCAATTGGGGCGACAGCCTCCAAAGTGTTCAGCATCGACATGGAACA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAATTGGGGCGACAGCCTCCAAAGTGTTCAGCATCGACATGGAACA  1107

seq1  GTGATGCTGCACCATGTGACGCAGCCACTGGCCACTACTCTCCTGCCCTG  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGCTGCACCATGTGACGCAGCCACTGGCCACTACTCTCCTGCCCTG  1157

seq1  AAAACTACACAGATTTAGGAAAATGTGTGGACATCATGGAATGTCTCTGA  1248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTACACAGATTTAGGAAAATGTGTGGACATCATGGAATGTCTCTGA  1207

seq1  ATTC  1252
      ||||
seq2  ATTC  1211