BAC Information

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BAC

Clone NameB6Ng01-021E01
Chromosome12 (Build37)
Map Location 45,671,152 - 45,840,946
singlet/doubletdoublet
Overlap geneNrcam, EG620025
Upstream geneLOC100039059, ENSMUSG00000066507, LOC100039081, LOC664854, Dnajb9, LOC100039062, Pnpla8
Downstream geneStxbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021E01.bB6Ng01-021E01.g
ACCDH853809DH853810
length1,105687
definitionDH853809|Mus musculus domesticus DNA, BAC clone: B6Ng01-021E01, 5' end.DH853810|Mus musculus domesticus DNA, BAC clone: B6Ng01-021E01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,671,152 - 45,672,261)(45,840,261 - 45,840,946)
sequence
gaattcattgtgttgggtttgtgttgtgtgtgctgttgtggccagaattc
atcattgagtatgaagatgcaatgcatgatgcagggctgtggcgccacca
ggctgaagtttctggaacacagaccacagcccaactgaagctgtctccct
atgtgaactactccttccgtgtcatggcagagaacagcattgggagaagt
atgccgagcgaggcatccgagcagtatcttacaaaagccgcaggtaaggc
tggaatgaatggagtcgacatgaaatgggaggggtttccatgccttctgg
agagctgaagcttgctcatgtgggactgcttcattttttagaaccagatc
agaatcccatggctgtggaaggactagggacagagccggacaacttggtg
attacatggaaggtgagccatgaagccttccgtttgcctccacctttttt
atactgagcagaaaaggttgcttttgaataacacctgcgttcgtattcct
tttgacccaatttgggaaaaaaaaacttacctgtatttagaagggaactt
tgtatagtaattaaatagttctatttcggtgaccaaaatggacaggtgag
agtcccagctttggaatttgttgccaagtatctgtcagtcatctgtatga
tgggaataggaacacagctgcttaagactgaaggaactaatgtatgtgaa
atgcttagcattatgcctcacacgaatatatgctgaaaaatgctagctcg
ccattattatcatcagaaagaccatttggaatatatgtatcaagctattc
ccagtagccaaattgttattacaatcattcttacttacattatctgtggt
ttagatctgaaaagttaggaactaaaaattgaaattttatttgcataatg
ataaactttagatctatgcatacacatacatgctatatgcatatttatat
tcacatatgataagagtagacagacccaaatctttacagaaaaatagatt
gtagtttccatctctcggttgacaatgatgagctatgaaacaaccaggat
aaaaaaggtaaatctagaaagctaaaatgtttaagagcctcccacactta
gacgg
gaattccaagcccaaggtcttgctaaggacgaactaggactgtcggaaca
ctggcggacggctttagctatgtcaggattcaatcttaaaaggcacttat
gataggaaaatattgaaagagagcacttggatccatacactagactagca
cgggaatggaacgcgggaatgaaaaatcactgtatgggtggggaacgcta
gactccaggaggagagcttccttgaaactcttttgcctcatgagtgactt
ttaagcctcttggcttgtccagttgactcgaccagagagcgtaacaaaaa
agccagtggtggagaaaacaataggttatgaaaggatctcaccatttaaa
agtagcttataaacaaaatatcttcaaaggctgtgggcctggaactaggc
ctgtgagtttagaggtgaaaacatgtgtggtaaaggatgggaaagggaat
aaacaatttaccagacaaaggcagctcatggaaaactgggttttggaatg
tgtatataaagctaggcctgtgggtgtggaaatggcaacaggtggtagct
ttgggggtatgggaaatgggaaacttgacttatccagtgaatgtagctct
tatattagattcatgggctatgtacctggagttattatgggtgttgtaga
attctggttgtgagacattattttttcttcattttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_45671152_45672261
seq2: B6Ng01-021E01.b_45_1149

seq1  GAATTCATTGTGTTGGGTTTGTGTTGTGTGTGCTGTTGTGGCCAGAATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTGTTGGGTTTGTGTTGTGTGTGCTGTTGTGGCCAGAATTC  50

seq1  ATCATTGAGTATGAAGATGCAATGCATGATGCAGGGCTGTGGCGCCACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGAGTATGAAGATGCAATGCATGATGCAGGGCTGTGGCGCCACCA  100

seq1  GGCTGAAGTTTCTGGAACACAGACCACAGCCCAACTGAAGCTGTCTCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAAGTTTCTGGAACACAGACCACAGCCCAACTGAAGCTGTCTCCCT  150

seq1  ATGTGAACTACTCCTTCCGTGTCATGGCAGAGAACAGCATTGGGAGAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAACTACTCCTTCCGTGTCATGGCAGAGAACAGCATTGGGAGAAGT  200

seq1  ATGCCGAGCGAGGCATCCGAGCAGTATCTTACAAAAGCCGCAGGTAAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCGAGCGAGGCATCCGAGCAGTATCTTACAAAAGCCGCAGGTAAGGC  250

seq1  TGGAATGAATGGAGTCGACATGAAATGGGAGGGGTTTCCATGCCTTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGAATGGAGTCGACATGAAATGGGAGGGGTTTCCATGCCTTCTGG  300

seq1  AGAGCTGAAGCTTGCTCATGTGGGACTGCTTCATTTTTTAGAACCAGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGAAGCTTGCTCATGTGGGACTGCTTCATTTTTTAGAACCAGATC  350

seq1  AGAATCCCATGGCTGTGGAAGGACTAGGGACAGAGCCGGACAACTTGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCCATGGCTGTGGAAGGACTAGGGACAGAGCCGGACAACTTGGTG  400

seq1  ATTACATGGAAGGTGAGCCATGAAGCCTTCCGTTTGCCTCCACCTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATGGAAGGTGAGCCATGAAGCCTTCCGTTTGCCTCCACCTTTTTT  450

seq1  ATACTGAGCAGAAAAGGTTGCTTTTGAATAACACCTGCGTTCGTATTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGAGCAGAAAAGGTTGCTTTTGAATAACACCTGCGTTCGTATTCCT  500

seq1  TTTGACCCAATTTGGGAAAAAAAAACTTACCTGTATTTAGAAGGGAACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACCCAATTTGGGAAAAAAAAACTTACCTGTATTTAGAAGGGAACTT  550

seq1  TGTATAGTAATTAAATAGTTCTATTTCGGTGACCAAAATGGACAGGTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGTAATTAAATAGTTCTATTTCGGTGACCAAAATGGACAGGTGAG  600

seq1  AGTCCCAGCTTTGGAATTTGTTGCCAAGTATCTGTCAGTCATCTGTATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCAGCTTTGGAATTTGTTGCCAAGTATCTGTCAGTCATCTGTATGA  650

seq1  TGGGAATAGGAACACAGCTGCTTAAGACTGAAGGAACTAATGTATGTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATAGGAACACAGCTGCTTAAGACTGAAGGAACTAATGTATGTGAA  700

seq1  ATGCTTAGCATTATGCCTCACACGAATATATGCTGAAAAATGCTAGCTCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTAGCATTATGCCTCACACGAATATATGCTGAAAAATGCTAGCTCG  750

seq1  CCATTATTATCATCAGAAAGACCATTTGGAATATATGTATCAAGCTATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATTATCATCAGAAAGACCATTTGGAATATATGTATCAAGCTATTC  800

seq1  CCAGTAGCCAAATTGTTATTACAATCATTCTTACTTACATTATCTGTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAGCCAAATTGTTATTACAATCATTCTTACTTACATTATCTGTGGT  850

seq1  TTAGATCTGAAAAGTTAGGAACTAAAAATTGAAATTTTATTTGCATAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATCTGAAAAGTTAGGAACTAAAAATTGAAATTTTATTTGCATAATG  900

seq1  ATAAAACTTTAGATCTATGCATACACATACATGCTATATGCATATTTATA  950
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AT-AAACTTTAGATCTATGCATACACATACATGCTATATGCATATTTATA  949

seq1  TTCACATATGAT-AGAGTAGACAGACCCAAATCTTTAACAGAAAAATAGA  999
      |||||||||||| ||||||||||||||||||||||| |||||||||||||
seq2  TTCACATATGATAAGAGTAGACAGACCCAAATCTTT-ACAGAAAAATAGA  998

seq1  TTGTAAGTTTCCATCTCTCGGTGGACAATGATGAGCTATGACACAAACAG  1049
      |||| ||||||||||||||||| |||||||||||||||||| |||| || 
seq2  TTGT-AGTTTCCATCTCTCGGTTGACAATGATGAGCTATGAAACAACCA-  1046

seq1  GGATATATAAAGTAAATCTAGATAGCTAAAATGTTTTAAGAGTCACCCAC  1099
      ||||| | || ||||||||||| |||||||||| |||||||| | |||||
seq2  GGATAAAAAAGGTAAATCTAGAAAGCTAAAATG-TTTAAGAGCCTCCCAC  1095

seq1  ACTTACGACGG  1110
      ||||| |||||
seq2  ACTTA-GACGG  1105

seq1: chr12_45840261_45840946
seq2: B6Ng01-021E01.g_64_750 (reverse)

seq1  ATAAAATGAGAAATAAATATTGTCTCACAACCAGAATTCTAC-ACACCCA  49
      |||||||||  || ||||| |||||||||||||||||||||| |||||||
seq2  ATAAAATGAAGAAAAAATAATGTCTCACAACCAGAATTCTACAACACCCA  50

seq1  TAATAACTCCAGGTACATAGCCCATGAATCTAATATAAGAGCTACATTCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACTCCAGGTACATAGCCCATGAATCTAATATAAGAGCTACATTCA  100

seq1  CTGGATAAGTCAAGTTTCCCATTTCCCATACCCCCAAAGCTACCACCTGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATAAGTCAAGTTTCCCATTTCCCATACCCCCAAAGCTACCACCTGT  150

seq1  TGCCATTTCCACACCCACAGGCCTAGCTTTATATACACATTCCAAAACCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTTCCACACCCACAGGCCTAGCTTTATATACACATTCCAAAACCC  200

seq1  AGTTTTCCATGAGCTGCCTTTGTCTGGTAAATTGTTTATTCCCTTTCCCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCCATGAGCTGCCTTTGTCTGGTAAATTGTTTATTCCCTTTCCCA  250

seq1  TCCTTTACCACACATGTTTTCACCTCTAAACTCACAGGCCTAGTTCCAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTACCACACATGTTTTCACCTCTAAACTCACAGGCCTAGTTCCAGG  300

seq1  CCCACAGCCTTTGAAGATATTTTGTTTATAAGCTACTTTTAAATGGTGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGCCTTTGAAGATATTTTGTTTATAAGCTACTTTTAAATGGTGAG  350

seq1  ATCCTTTCATAACCTATTGTTTTCTCCACCACTGGCTTTTTTGTTACGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTCATAACCTATTGTTTTCTCCACCACTGGCTTTTTTGTTACGCT  400

seq1  CTCTGGTCGAGTCAACTGGACAAGCCAAGAGGCTTAAAAGTCACTCATGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTCGAGTCAACTGGACAAGCCAAGAGGCTTAAAAGTCACTCATGA  450

seq1  GGCAAAAGAGTTTCAAGGAAGCTCTCCTCCTGGAGTCTAGCGTTCCCCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGAGTTTCAAGGAAGCTCTCCTCCTGGAGTCTAGCGTTCCCCAC  500

seq1  CCATACAGTGATTTTTCATTCCCGCGTTCCATTCCCGTGCTAGTCTAGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACAGTGATTTTTCATTCCCGCGTTCCATTCCCGTGCTAGTCTAGTG  550

seq1  TATGGATCCAAGTGCTCTCTTTCAATATTTTCCTATCATAAGTGCCTTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATCCAAGTGCTCTCTTTCAATATTTTCCTATCATAAGTGCCTTTT  600

seq1  AAGATTGAATCCTGACATAGCTAAAGCCGTCCGCCAGTGTTCCGACAGTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGAATCCTGACATAGCTAAAGCCGTCCGCCAGTGTTCCGACAGTC  650

seq1  CTAGTTCGTCCTTAGCAAGACCTTGGGCTTGGAATTC  686
      |||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCGTCCTTAGCAAGACCTTGGGCTTGGAATTC  687