BAC Information

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BAC

Clone NameB6Ng01-021E21
Chromosome12 (Build37)
Map Location 48,718,158 - 48,719,279
singlet/doubletsinglet
Overlap genenone
Upstream geneNova1, LOC100039190
Downstream geneEG664891, Gm1818
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021E21.bB6Ng01-021E21.g
ACCDH853847DH853848
length1,100777
definitionDH853847|Mus musculus domesticus DNA, BAC clone: B6Ng01-021E21, 5' end.DH853848|Mus musculus domesticus DNA, BAC clone: B6Ng01-021E21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtcaagctctatcttcttgaattgtagcaaaatcctttggatt
gagggtagatactaaaactcatatgaacagtatgtaattttaatattgtc
cagtgttctgcttaagaagttcaatgaaatatgaaaaattagatgtctgt
atcagtaaaatatatttctcttctttttttcacattttcagtatgcatca
aataacagctgtgttgaaatggcagtacaaagcacctgattgtatggtac
cttcctagagatgtcactatttctttctggaaggcttgcaaatgattgtc
actatttttcccaccttttaactataacaagtctttgatattagcaaagc
atctttctgtgatgtgacttattctgaacaattttatagtcagatatgtt
aaaccatggttaacatatagttcttcctccctagatgatttattcttaat
ggtcattgttgtgatttctgtctggctttcttccctcttatatctggcat
ctgcttaactcaggcaatgctgagattccacaaggatctggtaagtagga
ggcatgttgtcaggaagatcattttaatcttccatctgaatgcctctggt
gtgcagtctgacaattccttccacattttttatttaaatttcttctcagg
ataattggcttttaatggaatataggttagacagtggaataaattctata
ttttcacaatatacatctttgtgactaccaggaaaaaaatacaacaacaa
caacaacaacaacaaaaaaaacccaggatttaagtattagcctttttttt
tctcctttcccttcaccaggaagtgggctggcagagaggatttgcagaca
gattaatttgttcctatttttaacaggctgagcaataaactctaaaagtt
gagagcacaggaaagcaaatgacaggttttagaaaccgatacatactata
ttttgagaatcttagatttatatttgaaagatagtgacatagttttttct
catgaaatttatgtgtacattattagtgtgatggttacatggaatacatg
taataaactctgattcttggcacacaatgcaagtgtacaagttaacattt


gaattccttctgtttctattttgtggaagattttgaggaatattagtatt
aggtcttctttgaaggtctgataaaactctgctctaaacccatctgatct
tgagcttttttggttgggagacttaataactgtttctgtttctttatggg
ttatgggactgtttagattgtttatgcaatcatgatttaactttagtacc
tgatatctgtctagaatattgtccatttcgtccagattttacagttttgt
tgagtaatgacttttgtagtagggactgaagatttcttagatttcctcag
tttctgttttatttcccttttgatttctgattttgttaatttgggtactg
tctctgtgccctctggttaatctaatttcattagatgctgagagtggggt
atagaagttgcccatgttggtgagttgcaatgagtgcttttagcttaagt
aaagtttcttttatgaatgtggttgtgtttgcatttggagaatagatgtt
cagaattgagagttcttcttggtagatttttcctttaatgagtatgaagt
gtccttacttatcttttttgatgagttttagtttgaatgtttaatttatc
tggtattagaatggctacttgcacttgtttctttggaccatttgcttgga
aaattattttcctgccctctactctgaggtagtgttgtctttgaaactga
gtgtgttccttaatagggacatgctgggtcctgtttacatatacagtcta
ttaattgtctttatatatttagaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_48718158_48719279
seq2: B6Ng01-021E21.b_43_1142

seq1  GAATTCAGTCAAGCTCTATCTTCTTGAATTGTAGCAAAATCCTTTGGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCAAGCTCTATCTTCTTGAATTGTAGCAAAATCCTTTGGATT  50

seq1  GAGGGTAGATACTAAAACTCATATGAACAGTATGTAATTTTAATATTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTAGATACTAAAACTCATATGAACAGTATGTAATTTTAATATTGTC  100

seq1  CAGTGTTCTGCTTAAGAAGTTCAATGAAATATGAAAAATTAGATGTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTCTGCTTAAGAAGTTCAATGAAATATGAAAAATTAGATGTCTGT  150

seq1  ATCAGTAAAATATATTTCTCTTCTTTTTTTCACATTTTCAGTATGCATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTAAAATATATTTCTCTTCTTTTTTTCACATTTTCAGTATGCATCA  200

seq1  AATAACAGCTGTGTTGAAATGGCAGTACAAAGCACCTGATTGTATGGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAGCTGTGTTGAAATGGCAGTACAAAGCACCTGATTGTATGGTAC  250

seq1  CTTCCTAGAGATGTCACTATTTCTTTCTGGAAGGCTTGCAAATGATTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTAGAGATGTCACTATTTCTTTCTGGAAGGCTTGCAAATGATTGTC  300

seq1  ACTATTTTTCCCACCTTTTAACTATAACAAGTCTTTGATATTAGCAAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTTTCCCACCTTTTAACTATAACAAGTCTTTGATATTAGCAAAGC  350

seq1  ATCTTTCTGTGATGTGACTTATTCTGAACAATTTTATAGTCAGATATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTGTGATGTGACTTATTCTGAACAATTTTATAGTCAGATATGTT  400

seq1  AAACCATGGTTAACATATAGTTCTTCCTCCCTAGATGATTTATTCTTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATGGTTAACATATAGTTCTTCCTCCCTAGATGATTTATTCTTAAT  450

seq1  GGTCATTGTTGTGATTTCTGTCTGGCTTTCTTCCCTCTTATATCTGGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATTGTTGTGATTTCTGTCTGGCTTTCTTCCCTCTTATATCTGGCAT  500

seq1  CTGCTTAACTCAGGCAATGCTGAGATTCCACAAGGATCTGGTAAGTAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTAACTCAGGCAATGCTGAGATTCCACAAGGATCTGGTAAGTAGGA  550

seq1  GGCATGTTGTCAGGAAGATCATTTTAATCTTCCATCTGAATGCCTCTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTTGTCAGGAAGATCATTTTAATCTTCCATCTGAATGCCTCTGGT  600

seq1  GTGCAGTCTGACAATTCCTTCCACATTTTTTATTTAAATTTCTTCTCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGTCTGACAATTCCTTCCACATTTTTTATTTAAATTTCTTCTCAGG  650

seq1  ATAATTGGCTTTTAATGGAATATAGGTTAGACAGTGGAATAAATTCTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGGCTTTTAATGGAATATAGGTTAGACAGTGGAATAAATTCTATA  700

seq1  TTTTCACAATATACATCTTTGTGACTACCAGGAAAAAAATACAACAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACAATATACATCTTTGTGACTACCAGGAAAAAAATACAACAACAA  750

seq1  CAACAACAACAACAAAAAAAACCCAGGATTTAAGTATTAGCCTTTTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAACAACAAAAAAAACCCAGGATTTAAGTATTAGCCTTTTTTTT  800

seq1  TCTCCTTTCCCTTCACCAGGAAGTGGGCTGGCAGAGAGGATTTGCAGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTTCCCTTCACCAGGAAGTGGGCTGGCAGAGAGGATTTGCAGACA  850

seq1  GATTAAATTTGTTCCTAATTTTTAACAGGCTGAGCAATAAACTCTAAAAG  900
      |||| ||||||||||| |||||||||||||||||||||||||||||||||
seq2  GATT-AATTTGTTCCT-ATTTTTAACAGGCTGAGCAATAAACTCTAAAAG  898

seq1  TTGAGAGCACAGGAAAGCAAATGACAGGATTTTAAGAAACCGATACATAC  950
      ||||||||||||||||||||||||||||  ||| ||||||||||||||||
seq2  TTGAGAGCACAGGAAAGCAAATGACAGG--TTTTAGAAACCGATACATAC  946

seq1  TATAATTTTGAGAAATCTTAGATTTATATTTGAAATAGAATAGTGACATA  1000
      ||| |||||||| ||||||||||||||||||||||    |||||||||||
seq2  TAT-ATTTTGAG-AATCTTAGATTTATATTTGAAA---GATAGTGACATA  991

seq1  GTTTTTTTCTCCATGAAATTTTATGTGTACATTATTAGTGTGATGGTTTA  1050
      | |||||||| ||||||| ||||||||||||||||||||||||||| |||
seq2  G-TTTTTTCT-CATGAAA-TTTATGTGTACATTATTAGTGTGATGG-TTA  1037

seq1  CATTGAATACAATGTAAAATAAAACTCTGATGTCTTTGGCACAACAATGT  1100
      ||| |||||| ||||||    |||||||||| || ||||||| |||||| 
seq2  CATGGAATAC-ATGTAA---TAAACTCTGAT-TC-TTGGCAC-ACAATG-  1079

seq1  CAATGTTACAAGTTATACATTT  1122
      |||   ||||||||| ||||||
seq2  CAAGTGTACAAGTTA-ACATTT  1100


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