BAC Information

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BAC

Clone NameB6Ng01-021G04
Chromosome12 (Build37)
Map Location 44,171,718 - 44,352,579
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039059, ENSMUSG00000066507, LOC100039081, LOC664854, Dnajb9, LOC100039062
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021G04.bB6Ng01-021G04.g
ACCDH853905DH853906
length1,173586
definitionDH853905|Mus musculus domesticus DNA, BAC clone: B6Ng01-021G04, 5' end.DH853906|Mus musculus domesticus DNA, BAC clone: B6Ng01-021G04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,351,397 - 44,352,579)(44,171,718 - 44,172,255)
sequence
gaattctttatataatctaagtattactattctgttgatgagcagctggt
aggcattttccctcattttgcactttattacatctatcttttgttacctt
cccttgctgtgaagaagcctttaaatttgttatcagcctctttatttgta
ctttgtctcatttgccttcagtagcctatccagatgagtttgacctggaa
actgagccatttacattggatattttgctgttgttagcttccttttcagc
ccttattgttaggtacattttaccatatcacagtaatgaaatagcatgtt
tgctagtatctgaatgcataaggagcagaggttctctcagtgcacagcca
ctagttccaaaatagatgccaacatctcacttgagttatgtgtcaatccc
taaaccatgtactgaatccaatcataagaagtattgccattggttcttcc
attgtagaaggttgaaaatatgtaattgactaatactacatgtagagcca
gtgcagatttgaaagcataatgatcctttacctacaggaagaaaggggag
agatggaagacaggcacagataacaagtcctttaggagtcaagattgcat
taggccagaagttttacagtccttcctgtcccattttgatatcataaaaa
tacagaatcctaactcactttgacataactgagctagtagatgaatttga
acgttgtgttgccttgaaaagtaaaatgtgctttgtgaccagtgagtctg
taccaaggttttaaagatttagttctgagaacactcagagtttatttagg
aggaaatgctgttcttgagtgaaattaattttgtaatttttcattattga
aaggaattatagagaactagtgtaatcacgaagcaatcttaaacttgagt
cacgatgaaatcatgactagtgcccccgtgtcttcttttcctttttcaag
gagcatcgtgaaacagtacttggctgaatttgagcatcacaggacagttt
aatcaagtcttcccttcttttcaggaagcaatgtggctgtggtgtctttt
tttgctgaaattgtgtctgatcagatttgcattggtaacttgctggggaa
cattctcttccagcatggactaacctgagcaggttacattctggagcact
atagaactggagtcatttcattt
gaattcattttgttggtaaaggaaactgactgatggcttattttatggta
gtatgggtaaagctaactggaatcttatagcagaaaatgttctagatgac
catttgtggtgtgcctcgatgtatttacatcaagccaaagaccatagggg
taactggttgagtaaataaatttgagaaaagaaagcctctatagttcccc
tgaaagttctcaaaatgacatgtatatttgtatattttttatatctgacc
tgaaagaaagttttaaacttttaaatctctatgactacaacttctgattt
aaacccggattcttgtatttaaattgctaggaggaaaattattttctcac
aagaataagcccacttatatagtaaatatatataactatatatataatta
catatataactacatataaaactacatatataactatatatatataacta
tatataactatatataaatataaataaatatatataactatatatatata
tatatatatatatatatatatatatgtatatatatatatatatatatata
tatatatatatatatatatatatatatatatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_44351397_44352579
seq2: B6Ng01-021G04.b_46_1218 (reverse)

seq1  AAATGAAATGACACTCCAG-TCT-TAGTGCTTGCAGAATGTACACTGCTC  48
      ||||||||||  ||||||| ||| |||||| | |||||||||  ||||||
seq2  AAATGAAATG--ACTCCAGTTCTATAGTGC-TCCAGAATGTAACCTGCTC  47

seq1  AGGTTTAGTCCCATGCTGG-AGAGAATGTTTCTCAGCAGGATAACAAATG  97
      ||| ||||| ||||||||| |||||||||| | ||||| | | || ||||
seq2  AGG-TTAGT-CCATGCTGGAAGAGAATGTTCCCCAGCAAG-TTACCAATG  94

seq1  CAAATCTGATCAGGACACAATTTCAGC-AGAAAAGACA-CACAGCCACAT  145
      |||||||||||| |||||||||||||| | |||||||| |||||||||||
seq2  CAAATCTGATCA-GACACAATTTCAGCAAAAAAAGACACCACAGCCACAT  143

seq1  GGCTTCCTGGAAAAGGAAAGGGAAGACTTGATTAAACTGTCCTGTGATGG  195
       ||||||| ||||||  |||||||||||||||||||||||||||||||| 
seq2  TGCTTCCT-GAAAAG--AAGGGAAGACTTGATTAAACTGTCCTGTGATG-  189

seq1  CTTCAAATTCAGCCAAGTACTGTTTCACGATGCCTCCTTGAAAAAGGAAA  245
        |||||||||||||||||||||||||||||| |||||||||||||| ||
seq2  -CTCAAATTCAGCCAAGTACTGTTTCACGATG-CTCCTTGAAAAAGG-AA  236

seq1  AAGAAGGACACGGGGGCACTAGTCATGATTTCATCGTGACTCAAGTTTAA  295
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAA-GACACGGGGGCACTAGTCATGATTTCATCGTGACTCAAGTTTAA  285

seq1  GATTGCTTCGTGATTACACTAGTTCTCTATAATTCCTTTCAATAATGAAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCTTCGTGATTACACTAGTTCTCTATAATTCCTTTCAATAATGAAA  335

seq1  AATTACAAAATTAATTTCACTCAAGAACAGCATTTCCTCCTAAATAAACT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAAAATTAATTTCACTCAAGAACAGCATTTCCTCCTAAATAAACT  385

seq1  CTGAGTGTTCTCAGAACTAAATCTTTAAAACCTTGGTACAGACTCACTGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGTTCTCAGAACTAAATCTTTAAAACCTTGGTACAGACTCACTGG  435

seq1  TCACAAAGCACATTTTACTTTTCAAGGCAACACAACGTTCAAATTCATCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAGCACATTTTACTTTTCAAGGCAACACAACGTTCAAATTCATCT  485

seq1  ACTAGCTCAGTTATGTCAAAGTGAGTTAGGATTCTGTATTTTTATGATAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCTCAGTTATGTCAAAGTGAGTTAGGATTCTGTATTTTTATGATAT  535

seq1  CAAAATGGGACAGGAAGGACTGTAAAACTTCTGGCCTAATGCAATCTTGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGGGACAGGAAGGACTGTAAAACTTCTGGCCTAATGCAATCTTGA  585

seq1  CTCCTAAAGGACTTGTTATCTGTGCCTGTCTTCCATCTCTCCCCTTTCTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAAAGGACTTGTTATCTGTGCCTGTCTTCCATCTCTCCCCTTTCTT  635

seq1  CCTGTAGGTAAAGGATCATTATGCTTTCAAATCTGCACTGGCTCTACATG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGGTAAAGGATCATTATGCTTTCAAATCTGCACTGGCTCTACATG  685

seq1  TAGTATTAGTCAATTACATATTTTCAACCTTCTACAATGGAAGAACCAAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTAGTCAATTACATATTTTCAACCTTCTACAATGGAAGAACCAAT  735

seq1  GGCAATACTTCTTATGATTGGATTCAGTACATGGTTTAGGGATTGACACA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATACTTCTTATGATTGGATTCAGTACATGGTTTAGGGATTGACACA  785

seq1  TAACTCAAGTGAGATGTTGGCATCTATTTTGGAACTAGTGGCTGTGCACT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCAAGTGAGATGTTGGCATCTATTTTGGAACTAGTGGCTGTGCACT  835

seq1  GAGAGAACCTCTGCTCCTTATGCATTCAGATACTAGCAAACATGCTATTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAACCTCTGCTCCTTATGCATTCAGATACTAGCAAACATGCTATTT  885

seq1  CATTACTGTGATATGGTAAAATGTACCTAACAATAAGGGCTGAAAAGGAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTGTGATATGGTAAAATGTACCTAACAATAAGGGCTGAAAAGGAA  935

seq1  GCTAACAACAGCAAAATATCCAATGTAAATGGCTCAGTTTCCAGGTCAAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACAACAGCAAAATATCCAATGTAAATGGCTCAGTTTCCAGGTCAAA  985

seq1  CTCATCTGGATAGGCTACTGAAGGCAAATGAGACAAAGTACAAATAAAGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTGGATAGGCTACTGAAGGCAAATGAGACAAAGTACAAATAAAGA  1035

seq1  GGCTGATAACAAATTTAAAGGCTTCTTCACAGCAAGGGAAGGTAACAAAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGATAACAAATTTAAAGGCTTCTTCACAGCAAGGGAAGGTAACAAAA  1085

seq1  GATAGATGTAATAAAGTGCAAAATGAGGGAAAATGCCTACCAGCTGCTCA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATGTAATAAAGTGCAAAATGAGGGAAAATGCCTACCAGCTGCTCA  1135

seq1  TCAACAGAATAGTAATACTTAGATTATATAAAGAATTC  1183
      ||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGAATAGTAATACTTAGATTATATAAAGAATTC  1173

seq1: chr12_44171718_44172255
seq2: B6Ng01-021G04.g_66_603

seq1  GAATTCATTTTGTTGGTAAAGGAAACTGACTGATGGCTTATTTTATGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTGTTGGTAAAGGAAACTGACTGATGGCTTATTTTATGGTA  50

seq1  GTATGGGTAAAGCTAACTGGAATCTTATAGCAGAAAATGTTCTAGATGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGGTAAAGCTAACTGGAATCTTATAGCAGAAAATGTTCTAGATGAC  100

seq1  CATTTGTGGTGTGCCTCGATGTATTTACATCAAGCCAAAGACCATAGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTGGTGTGCCTCGATGTATTTACATCAAGCCAAAGACCATAGGGG  150

seq1  TAACTGGTTGAGTAAATAAATTTGAGAAAAGAAAGCCTCTATAGTTCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGTTGAGTAAATAAATTTGAGAAAAGAAAGCCTCTATAGTTCCCC  200

seq1  TGAAAGTTCTCAAAATGACATGTATATTTGTATATTTTTTATATCTGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTTCTCAAAATGACATGTATATTTGTATATTTTTTATATCTGACC  250

seq1  TGAAAGAAAGTTTTAAACTTTTAAATCTCTATGACTACAACTTCTGATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAAAGTTTTAAACTTTTAAATCTCTATGACTACAACTTCTGATTT  300

seq1  AAACCCGGATTCTTGTATTTAAATTGCTAGGAGGAAAATTATTTTCTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCGGATTCTTGTATTTAAATTGCTAGGAGGAAAATTATTTTCTCAC  350

seq1  AAGAATAAGCCCACTTATATAGTAAATATATATAACTATATATATAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAAGCCCACTTATATAGTAAATATATATAACTATATATATAATTA  400

seq1  CATATATAACTACATATAAAACTACATATATAACTATATATATATAACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATAACTACATATAAAACTACATATATAACTATATATATATAACTA  450

seq1  TATATAACTATATATAAATATAAATAAATATATATAACTATATATATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAACTATATATAAATATAAATAAATATATATAACTATATATATATA  500

seq1  TATATATATATATATATATATATATGTATATATATATA  538
      ||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATGTATATATATATA  538