BAC Information

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BAC

Clone NameB6Ng01-021I16
Chromosome12 (Build37)
Map Location 56,663,510 - 56,795,520
singlet/doubletdoublet
Overlap geneAldoa-ps1, Insm2, Garnl1
Upstream geneLOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2, Baz1a, LOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, 1110008L16Rik, LOC673593, LOC665366, Psma6, LOC100039871, Nfkbia
Downstream geneBrms1l, LOC100039915, LOC382600, LOC382601, Mbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021I16.bB6Ng01-021I16.g
ACCDH854018DH854019
length568547
definitionDH854018|Mus musculus domesticus DNA, BAC clone: B6Ng01-021I16, 5' end.DH854019|Mus musculus domesticus DNA, BAC clone: B6Ng01-021I16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,663,510 - 56,664,081)(56,794,968 - 56,795,520)
sequence
aatctaataagtatcacacacacacacacacacacacacacactgatcat
atcaattctgttcttttagagaatgctgactaatatactcagtctctgtc
tgcatgtctgggaaattatcactctgtgtgtgtgcctgtatgtgtgtaca
ttggctgcatgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacgtgc
gtgcaggccagagggtgagatcacatgtctttgcgtgctgtccatgggct
agtttttgagacagtgtctctctgaatatgaaacgtaacagttcagctag
gctgtccagccagtgagcttcagggatttccctgcatctgcgtccccagt
tctgagttacatgggcacactgacaaacctggccttttaggtaggtcctc
atgtttgtgagacagacactttaccactttacgagctgagtcgcctcctc
agctctactcacacatttctttctttttttttttttttaaagatttattt
attattatatgtaaatacactgaagttgtcttcagactctcccagaggag
ggagtcagatcttattat
atgtttaataattacaggcaccgtgccccaccccctttcccctgcccagg
cagcagcaggggtggtgcaggggctacctcttggttttttaactaaattt
ttctaacttactctctggtcttcctaaattattgagatttttttggcttt
tagttttacgattaataatataaatcctctttatagtaagaatagaatta
gttcagaagtagtaatctggggcctgaaactgtggctcaatggttttttt
tgtacttgctactatttcagaggaccctgagttcaattccactgcatcca
catggcaactcagaactctctataactctagttccaaggtacccagtgtt
gtcttctggtctcctagggtagcaagcacacacatggtgaacatgcagtc
agaacacatccactcactaaaaaaaatagtgataatatagtcatttggaa
agtctgagtttaattttaaattttttattctattttggtattattttggg
gttttgggctggttgcttggttgattggttttggatttgtttgtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_56663510_56664081
seq2: B6Ng01-021I16.b_42_614

seq1  GAATTCAATCTAATAAGTATCACACACACACACACACACACACACACACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCTAATAAGTATCACACACACACACACACACACACACACACT  50

seq1  GATCATATCAATTCTGTTCTTTTAGAGAATGCTGACTAATATACTCAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATATCAATTCTGTTCTTTTAGAGAATGCTGACTAATATACTCAGTC  100

seq1  TCTGTCTGCATGTCTGGGAAATTATCACTCTGTGTGTGTGCCTGTATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGCATGTCTGGGAAATTATCACTCTGTGTGTGTGCCTGTATGTG  150

seq1  TGTACATTGGCTGCATGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATTGGCTGCATGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGC  200

seq1  ACGTGCGTGCAGGCCAGAGGTTGACATCAGATGTCTTTCCTTTCTCTCCA  250
      |||||||||||||||||||| ||| |||| |||||||| | | || ||||
seq2  ACGTGCGTGCAGGCCAGAGGGTGAGATCACATGTCTTTGCGTGCTGTCCA  250

seq1  TGGGCTAGTTTTTGAGACAGTGTCTCTCTGAATATGAAACGTAACAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTAGTTTTTGAGACAGTGTCTCTCTGAATATGAAACGTAACAGTTC  300

seq1  AGCTAGGCTGTCCAGCCAGTGAGCTTCAGGGATTTCCCTGCATCTGCGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGCTGTCCAGCCAGTGAGCTTCAGGGATTTCCCTGCATCTGCGTC  350

seq1  CCCAGTTCTGAGTTACATGGGCACACTGACAAACCTGGCCTTTTAGGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTCTGAGTTACATGGGCACACTGACAAACCTGGCCTTTTAGGTAG  400

seq1  GTCCTCATGTTTGTGAGACAGACACTTTACCACTTTACGAGCTGAGTCGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCATGTTTGTGAGACAGACACTTTACCACTTTACGAGCTGAGTCGC  450

seq1  CTCCTCAGCTCTACTCACACATTTCTTTCTTTTTTTTTTTTTTTAAAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGCTCTACTCACACATTTCTTTCTTTTTTTTTTTTTTTAAAGAT  500

seq1  TTATTTATTATTATATGTAAATACACTGTAGTTGTCTTCAGACACT-CCA  549
      |||||||||||||||||||||||||||| |||||||||||||| || |||
seq2  TTATTTATTATTATATGTAAATACACTGAAGTTGTCTTCAGACTCTCCCA  550

seq1  GAGGAGGGAGTCAGATCTCATTA  572
      |||||||||||||||||| ||||
seq2  GAGGAGGGAGTCAGATCTTATTA  573

seq1: chr12_56794968_56795520
seq2: B6Ng01-021I16.g_67_619 (reverse)

seq1  CAAACAAACAAATCCAAAACCAATCAACCAAGCAACCAGCCCAAAACCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAATCCAAAACCAATCAACCAAGCAACCAGCCCAAAACCCC  50

seq1  AAAATAATACCAAAATAGAATAAAAAATTTAAAATTAAACTCAGACTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATACCAAAATAGAATAAAAAATTTAAAATTAAACTCAGACTTTC  100

seq1  CAAATGACTATATTATCACTATTTTTTTTAGTGAGTGGATGTGTTCTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGACTATATTATCACTATTTTTTTTAGTGAGTGGATGTGTTCTGAC  150

seq1  TGCATGTTCACCATGTGTGTGCTTGCTACCCTAGGAGACCAGAAGACAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTTCACCATGTGTGTGCTTGCTACCCTAGGAGACCAGAAGACAAC  200

seq1  ACTGGGTACCTTGGAACTAGAGTTATAGAGAGTTCTGAGTTGCCATGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTACCTTGGAACTAGAGTTATAGAGAGTTCTGAGTTGCCATGTGG  250

seq1  ATGCAGTGGAATTGAACTCAGGGTCCTCTGAAATAGTAGCAAGTACAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTGGAATTGAACTCAGGGTCCTCTGAAATAGTAGCAAGTACAAAA  300

seq1  AAAACCATTGAGCCACAGTTTCAGGCCCCAGATTACTACTTCTGAACTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCATTGAGCCACAGTTTCAGGCCCCAGATTACTACTTCTGAACTAA  350

seq1  TTCTATTCTTACTATAAAGAGGATTTATATTATTAATCGTAAAACTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTCTTACTATAAAGAGGATTTATATTATTAATCGTAAAACTAAAA  400

seq1  GCCAAAAAAATCTCAATAATTTAGGAAGACCAGAGAGTAAGTTAGAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAAAAATCTCAATAATTTAGGAAGACCAGAGAGTAAGTTAGAAAAA  450

seq1  TTTAGTTAAAAAACCAAGAGGTAGCCCCTGCACCACCCCTGCTGCTGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTAAAAAACCAAGAGGTAGCCCCTGCACCACCCCTGCTGCTGCCT  500

seq1  GGGCAGGGGAAAGGGGGTGGGGCACGGTGCCTGTAATTATTAAACATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGGGAAAGGGGGTGGGGCACGGTGCCTGTAATTATTAAACATGAA  550

seq1  TTC  553
      |||
seq2  TTC  553